• 4595 Citations
  • 36 Scopus h-Index
19992019

Research output per year

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Research Output

Article

A bibliometric analysis on tobacco regulation investigators

Li, D., Okamoto, J., Liu, H. D. & Leischow, S., Mar 21 2015, In : BioData Mining. 8, 1, 11.

Research output: Contribution to journalArticle

6 Scopus citations
4 Scopus citations

A common type system for clinical natural language processing

Wu, S. T., Kaggal, V. C., Dligach, D., Masanz, J. J., Chen, P., Becker, L., Chapman, W. W., Savova, G. K., Liu, H. & Chute, C. G., Jan 3 2013, In : Journal of Biomedical Semantics. 4, 1, 1.

Research output: Contribution to journalArticle

13 Scopus citations

A comparison of word embeddings for the biomedical natural language processing

Wang, Y., Liu, S., Afzal, N., Rastegar-Mojarad, M., Wang, L., Shen, F., Kingsbury, P. & Liu, H. D., Nov 1 2018, In : Journal of Biomedical Informatics. 87, p. 12-20 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

A comparison study on algorithms of detecting long forms for short forms in biomedical text

Torii, M., Hu, Z. Z., Song, M., Wu, C. H. & Liu, H., Nov 27 2007, In : BMC bioinformatics. 8, SUPPL. 9, S5.

Research output: Contribution to journalArticle

22 Scopus citations

A computational framework for converting textual clinical diagnostic criteria into the quality data model

Hong, N., Li, D., Yu, Y., Xiu, Q., Liu, H. D. & Jiang, G. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 11-21 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

AffyProbeMiner: A web resource for computing or retrieving accurately redefined Affymetrix probe sets

Liu, H., Zeeberg, B. R., Qu, G., Koru, A. G., Ferrucci, A., Kahn, A., Ryan, M. C., Nuhanovic, A., Munson, P. J., Reinhold, W. C., Kane, D. W. & Weinstein, J. N., Sep 15 2007, In : Bioinformatics. 23, 18, p. 2385-2390 6 p.

Research output: Contribution to journalArticle

57 Scopus citations
7 Scopus citations

AMP kinase-related kinase NUAK2 affects tumor growth, migration, and clinical outcome of human melanoma

Namiki, T., Tanemura, A., Valencia, J. C., Coelho, S. G., Passeron, T., Kawaguchi, M., Vieira, W. D., Ishikawa, M., Nishijima, W., Izumo, T., Kaneko, Y., Katayama, I., Yamaguchi, Y., Yin, L., Polley, E. C., Liu, H., Kawakami, Y., Eishi, Y., Takahashi, E., Yokozeki, H. & 1 others, Hearing, V. J., Apr 19 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 16, p. 6597-6602 6 p.

Research output: Contribution to journalArticle

31 Scopus citations

A multi-aspect comparison study of supervised word sense disambiguation

Liu, H., Teller, V. & Friedman, C., Jul 1 2004, In : Journal of the American Medical Informatics Association. 11, 4, p. 320-331 12 p.

Research output: Contribution to journalArticle

51 Scopus citations
1 Scopus citations

An automated approach for ranking journals to help in clinician decision support

Jonnalagadda, S. R., Moosavinasab, S., Nath, C., Li, D., Chute, C. G. & Liu, H. D., 2014, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2014, p. 757-766 10 p.

Research output: Contribution to journalArticle

An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics

Torii, M., Yin, L., Nguyen, T., Mazumdar, C. T., Liu, H., Hartley, D. M. & Nelson, N. P., Jan 1 2011, In : International Journal of Medical Informatics. 80, 1, p. 56-66 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

An investigation into the functional form of the size-defect relationship for software modules

Koru, A. G., Zhang, D., El Emam, K. & Liu, H., Mar 23 2009, In : IEEE Transactions on Software Engineering. 35, 2 SPEC. ISS., p. 293-304 12 p.

Research output: Contribution to journalArticle

90 Scopus citations

Annotating breast cancer microarray samples using ontologies.

Liu, H., Li, X., Yoon, V. & Clarke, R., 2008, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. p. 414-418 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

A Part-Of-Speech term weighting scheme for biomedical information retrieval

Wang, Y., Wu, S., Li, D., Mehrabi, S. & Liu, H. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 379-389 11 p.

Research output: Contribution to journalArticle

18 Scopus citations

Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review

Wi, C. I., Sohn, S., Rolfes, M. C., Seabright, A., Ryu, E., Voge, G., Bachman, K. A., Park, M., Kita, H., Croghan, I. T., Liu, H. D. & Juhn, Y. J., Aug 15 2017, In : American Journal of Respiratory and Critical Care Medicine. 196, 4, p. 430-437 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

A privacy-preserving distributed filtering framework for NLP artifacts

Sadat, M. N., Aziz, M. M. A., Mohammed, N., Pakhomov, S., Liu, H. & Jiang, X., Sep 7 2019, In : BMC Medical Informatics and Decision Making. 19, 1, 183.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network

Bielinski, S. J., Pathak, J., Carrell, D. S., Takahashi, P. Y., Olson, J. E., Larson, N., Liu, H. D., Sohn, S., Wells, Q. S., Denny, J. C., Rasmussen-Torvik, L. J., Pacheco, J. A., Jackson, K. L., Lesnick, T. G., Gullerud, R. E., Decker, P. A., Pereira, N. L., Ryu, E., Dart, R. A., Peissig, P. & 7 others, Linneman, J. G., Jarvik, G. P., Larson, E. B., Bock, J. A., Tromp, G. C., De Andrade, M. & Roger, V. L., Jul 21 2015, (Accepted/In press) In : Journal of Cardiovascular Translational Research.

Research output: Contribution to journalArticle

11 Scopus citations

Ascertainment of asthma prognosis using natural language processing from electronic medical records

Sohn, S., Wi, C. I., Wu, S. T., Liu, H. D., Ryu, E., Krusemark, E., Seabright, A., Voge, G. A. & Juhn, Y. J., Jan 1 2018, (Accepted/In press) In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

5 Scopus citations
3 Scopus citations

Association of Ankle-Brachial Indices With Limb Revascularization or Amputation in Patients With Peripheral Artery Disease

Moussa Pacha, H., Mallipeddi, V. P., Afzal, N., Moon, S., Kaggal, V. C., Kalra, M., Oderich, G. S., Wennberg, P. W., Rooke, T. W., Scott, C. G., Kullo, I. J., McBane, R. D., Nishimura, R. A., Chaudhry, R., Liu, H. & Arruda-Olson, A. M., Dec 7 2018, In : JAMA Network Open. 1, 8, p. e185547

Research output: Contribution to journalArticle

Open Access

A study of abbreviations in MEDLINE abstracts.

Liu, H., Aronson, A. R. & Friedman, C., 2002, In : Proceedings / AMIA ... Annual Symposium. AMIA Symposium. p. 464-468 5 p.

Research output: Contribution to journalArticle

44 Scopus citations

A study of abbreviations in the UMLS.

Liu, H., Lussier, Y. A. & Friedman, C., 2001, In : Proceedings / AMIA ... Annual Symposium. AMIA Symposium. p. 393-397 5 p.

Research output: Contribution to journalArticle

36 Scopus citations

A study of transportability of an existing smoking status detection module across institutions.

Liu, M., Shah, A., Jiang, M., Peterson, N. B., Dai, Q., Aldrich, M. C., Chen, Q., Bowton, E. A., Liu, H., Denny, J. C. & Xu, H., 2012, In : Unknown Journal. 2012, p. 577-586 10 p.

Research output: Contribution to journalArticle

23 Scopus citations

A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text

Li, D., Liu, S., Rastegar-Mojarad, M., Wang, Y., Chaudhary, V., Therneau, T. M. & Liu, H. D., 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 789-798 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

Automated chart review for asthma cohort identification using natural language processing: An exploratory study

Wu, S. T., Sohn, S., Ravikumar, K. E., Wagholikar, K., Jonnalagadda, S. R., Liu, H. & Juhn, Y. J., Nov 1 2013, In : Annals of Allergy, Asthma and Immunology. 111, 5, p. 364-369 6 p.

Research output: Contribution to journalArticle

32 Scopus citations

Automated chart review utilizing natural language processing algorithm for asthma predictive index

Kaur, H., Sohn, S., Wi, C. I., Ryu, E., Park, M. A., Bachman, K., Kita, H., Croghan, I., Castro-Rodriguez, J. A., Voge, G. A., Liu, H. & Juhn, Y. J., Feb 13 2018, In : BMC Pulmonary Medicine. 18, 1, 34.

Research output: Contribution to journalArticle

9 Scopus citations

Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing

Moon, S., Liu, S., Scott, C. G., Samudrala, S., Abidian, M. M., Geske, J. B., Noseworthy, P., Shellum, J. L., Chaudhry, R., Ommen, S. R., Nishimura, R. A., Liu, H. D. & Arruda-Olson, A. M., Aug 1 2019, In : International Journal of Medical Informatics. 128, p. 32-38 7 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Automated recommendation for cervical cancer screening and surveillance

Wagholikar, K. B., Aclaughlin, K. L., Casey, P., Kastner, T., Henry, M., Hankey, R., Peters, S. G., Greenes, R., Chute, C. G., Liu, H. & Chaudhry, R., Oct 15 2014, In : Cancer Informatics. 13

Research output: Contribution to journalArticle

3 Scopus citations

Automatically extracting sentences from medline citations to support clinicians' information needs

Jonnalagadda, S. R., Del Fiol, G., Medlin, R., Weir, C., Fiszman, M., Mostafa, J. & Liu, H., Aug 28 2013, In : Journal of the American Medical Informatics Association. 20, 5, p. 995-1000 6 p.

Research output: Contribution to journalArticle

22 Scopus citations

Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS

Liu, H., Johnson, S. B. & Friedman, C., Nov 1 2002, In : Journal of the American Medical Informatics Association. 9, 6, p. 621-636 16 p.

Research output: Contribution to journalArticle

70 Scopus citations

A vocabulary development and visualization tool based on natural language processing and the mining of textual patient reports

Friedman, C., Liu, H. & Shagina, L., Jun 2003, In : Journal of Biomedical Informatics. 36, 3, p. 189-201 13 p.

Research output: Contribution to journalArticle

13 Scopus citations

BELMiner: Adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences

Ravikumar, K. E., Rastegar-Mojarad, M. & Liu, H. D., Jan 1 2017, In : Database. 2017, 1, baw156.

Research output: Contribution to journalArticle

9 Scopus citations

BELTracker: evidence sentence retrieval for BEL statements

Rastegar-Mojarad, M., Komandur Elayavilli, R. & Liu, H. D., 2016, In : Database : the journal of biological databases and curation. 2016

Research output: Contribution to journalArticle

3 Scopus citations

Biological nomenclatures: a source of lexical knowledge and ambiguity.

Tuason, O., Chen, L., Liu, H., Blake, J. A. & Friedman, C., 2004, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. p. 238-249 12 p.

Research output: Contribution to journalArticle

56 Scopus citations

BioTagger-GM: A Gene/Protein Name Recognition System

Torii, M., Hu, Z., Wu, C. H. & Liu, H., Mar 1 2009, In : Journal of the American Medical Informatics Association. 16, 2, p. 247-255 9 p.

Research output: Contribution to journalArticle

42 Scopus citations

BioThesaurus: A web-based thesaurus of protein and gene names

Liu, H., Hu, Z. Z., Zhang, J. & Wu, C., Jan 1 2006, In : Bioinformatics. 22, 1, p. 103-105 3 p.

Research output: Contribution to journalArticle

87 Scopus citations

Building effective defect-prediction models in practice

Koru, A. G. & Liu, H., Nov 1 2005, In : IEEE Software. 22, 6, p. 23-29 7 p.

Research output: Contribution to journalArticle

120 Scopus citations

Burden of hospitalization in clinically diagnosed peripheral artery disease: A community-based study

Arruda-Olson, A. M., Moussa Pacha, H., Afzal, N., Abram, S., Lewis, B. R., Isseh, I., Haddad, R., Scott, C. G., Bailey, K. R., Liu, H. D., Rooke, T. W. & Kullo, I. J., Feb 1 2018, In : Vascular Medicine (United Kingdom). 23, 1, p. 23-31 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Cancer based pharmacogenomics network supported with scientific evidences: From the view of drug repurposing

Wang, L., Liu, H., Chute, C. G. & Zhu, Q., Jan 8 2015, In : BioData Mining. 8, 1, 042.

Research output: Contribution to journalArticle

8 Scopus citations

CellMiner: A web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set

Reinhold, W. C., Sunshine, M., Liu, H., Varma, S., Kohn, K. W., Morris, J., Doroshow, J. & Pommier, Y., Jul 15 2012, In : Cancer research. 72, 14, p. 3499-3511 13 p.

Research output: Contribution to journalArticle

231 Scopus citations

CHEK2 genomic and proteomic analyses reveal genetic inactivation or endogenous activation across the 60 cell lines of the US National Cancer Institute

Zoppoli, G., Solier, S., Reinhold, W. C., Liu, H., Connelly, J. W., Monks, A., Shoemaker, R. H., Abaan, O. D., Davis, S. R., Meltzer, P. S., Doroshow, J. H. & Pommier, Y., Jan 26 2012, In : Oncogene. 31, 4, p. 403-418 16 p.

Research output: Contribution to journalArticle

14 Scopus citations

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines

Soysal, E., Wang, J., Jiang, M., Wu, Y., Pakhomov, S., Liu, H. D. & Xu, H., Mar 1 2018, In : Journal of the American Medical Informatics Association. 25, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

33 Scopus citations

Clinical decision support with automated text processing for cervical cancer screening

Wagholikar, K. B., MacLaughlin, K. L., Henry, M. R., Greenes, R. A., Hankey, R. A., Liu, H. & Chaudhry, R. C., Sep 1 2012, In : Journal of the American Medical Informatics Association. 19, 5, p. 833-839 7 p.

Research output: Contribution to journalArticle

40 Scopus citations

Clinical documentation variations and NLP system portability: A case study in asthma birth cohorts across institutions

Sohn, S., Wang, Y., Wi, C. I., Krusemark, E. A., Ryu, E., Ali, M. H., Juhn, Y. J. & Liu, H. D., Mar 1 2018, In : Journal of the American Medical Informatics Association. 25, 3, p. 353-359 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

Clinical element models in the SHARPn consortium

Oniki, T. A., Zhuo, N., Beebe, C. E., Liu, H. D., Coyle, J. F., Parker, C. G., Solbrig, H. R., Marchant, K., Kaggal, V. C., Chute, C. G. & Huff, S. M., Mar 1 2016, In : Journal of the American Medical Informatics Association. 23, 2, p. 248-256 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

CliniViewer: A tool for viewing electronic medical records based on natural language processing and XML

Liu, H. & Friedman, C., Jan 1 2004, In : Studies in health technology and informatics. 107, p. 639-643 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

Colorectal cancer with residual polyp of origin: A model of malignant transformation

Druliner, B. R., Rashtak, S., Ruan, X., Bae, T., Vasmatzis, N., O’Brien, D., Johnson, R., Felmlee-Devine, D., Washechek-Aletto, J., Basu, N., Liu, H., Smyrk, T., Abyzov, A. & Boardman, L. A., Aug 2016, In : Translational Oncology. 9, 4, p. 280-286 7 p.

Research output: Contribution to journalArticle

6 Scopus citations