• 4595 Citations
  • 36 Scopus h-Index
19992019

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Article
2019
4 Scopus citations

A privacy-preserving distributed filtering framework for NLP artifacts

Sadat, M. N., Aziz, M. M. A., Mohammed, N., Pakhomov, S., Liu, H. & Jiang, X., Sep 7 2019, In : BMC Medical Informatics and Decision Making. 19, 1, 183.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing

Moon, S., Liu, S., Scott, C. G., Samudrala, S., Abidian, M. M., Geske, J. B., Noseworthy, P., Shellum, J. L., Chaudhry, R., Ommen, S. R., Nishimura, R. A., Liu, H. D. & Arruda-Olson, A. M., Aug 1 2019, In : International Journal of Medical Informatics. 128, p. 32-38 7 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries

Hong, N., Wen, A., Stone, D. J., Tsuji, S., Kingsbury, P. R., Rasmussen, L. V., Pacheco, J. A., Adekkanattu, P., Wang, F., Luo, Y., Pathak, J., Liu, H. & Jiang, G., Nov 2019, In : Journal of Biomedical Informatics. 99, 103310.

Research output: Contribution to journalArticle

1 Scopus citations

Discovering associations between problem list and practice setting

Wang, L., Wang, Y., Shen, F., Rastegar-Mojarad, M. & Liu, H. D., Apr 4 2019, In : BMC Medical Informatics and Decision Making. 19, 69.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Ensembles of natural language processing systems for portable phenotyping solutions

Liu, C., Ta, C. N., Rogers, J. R., Li, Z., Lee, J., Butler, A. M., Shang, N., Kury, F. S. P., Wang, L., Shen, F., Liu, H., Ena, L., Friedman, C. & Weng, C., Dec 2019, In : Journal of Biomedical Informatics. 100, 103318.

Research output: Contribution to journalArticle

1 Scopus citations

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology

Shen, F., Peng, S., Fan, Y., Wen, A., Liu, S., Wang, Y., Wang, L. & Liu, H., Aug 2019, In : Journal of Biomedical Informatics. 96, 103246.

Research output: Contribution to journalArticle

2 Scopus citations

Natural language processing for the identification of silent brain infarcts from neuroimaging reports

Fu, S., Leung, L. Y., Wang, Y., Raulli, A. O., Kallmes, D. F., Kinsman, K. A., Nelson, K. B., Clark, M. S., Luetmer, P. H., Kingsbury, P. R., Kent, D. M. & Liu, H., May 2019, In : Journal of medical Internet research. 21, 5, e12109.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Natural language processing of radiology reports for identification of skeletal site-specific fractures

Wang, Y., Mehrabi, S., Sohn, S., Atkinson, E. J., Amin, S. & Liu, H. D., Apr 4 2019, In : BMC Medical Informatics and Decision Making. 19, 73.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

PSB 2019 Workshop on Text Mining and Visualization for Precision Medicine

Gonzalez-Hernandez, G., Lu, Z., Leaman, R., Weissenbacher, D., Boland, M. R., Chen, Y., Du, J., Fluck, J., Greene, C. S., Holmes, J., Kashyap, A., Nielsen, R. L., Ouyang, Z., Schaaf, S., Taroni, J. N., Tao, C., Zhang, Y. & Liu, H. D., Jan 1 2019, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 24, p. 449-454 6 p.

Research output: Contribution to journalArticle

Rare disease knowledge enrichment through a data-driven approach

Shen, F., Zhao, Y., Wang, L., Mojarad, M. R., Wang, Y., Liu, S. & Liu, H., Feb 14 2019, In : BMC Medical Informatics and Decision Making. 19, 1, 752.

Research output: Contribution to journalArticle

4 Scopus citations
2018

A comparison of word embeddings for the biomedical natural language processing

Wang, Y., Liu, S., Afzal, N., Rastegar-Mojarad, M., Wang, L., Shen, F., Kingsbury, P. & Liu, H. D., Nov 1 2018, In : Journal of Biomedical Informatics. 87, p. 12-20 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

Ascertainment of asthma prognosis using natural language processing from electronic medical records

Sohn, S., Wi, C. I., Wu, S. T., Liu, H. D., Ryu, E., Krusemark, E., Seabright, A., Voge, G. A. & Juhn, Y. J., Jan 1 2018, (Accepted/In press) In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

5 Scopus citations
3 Scopus citations

Association of Ankle-Brachial Indices With Limb Revascularization or Amputation in Patients With Peripheral Artery Disease

Moussa Pacha, H., Mallipeddi, V. P., Afzal, N., Moon, S., Kaggal, V. C., Kalra, M., Oderich, G. S., Wennberg, P. W., Rooke, T. W., Scott, C. G., Kullo, I. J., McBane, R. D., Nishimura, R. A., Chaudhry, R., Liu, H. & Arruda-Olson, A. M., Dec 7 2018, In : JAMA Network Open. 1, 8, p. e185547

Research output: Contribution to journalArticle

Open Access

Automated chart review utilizing natural language processing algorithm for asthma predictive index

Kaur, H., Sohn, S., Wi, C. I., Ryu, E., Park, M. A., Bachman, K., Kita, H., Croghan, I., Castro-Rodriguez, J. A., Voge, G. A., Liu, H. & Juhn, Y. J., Feb 13 2018, In : BMC Pulmonary Medicine. 18, 1, 34.

Research output: Contribution to journalArticle

9 Scopus citations

Burden of hospitalization in clinically diagnosed peripheral artery disease: A community-based study

Arruda-Olson, A. M., Moussa Pacha, H., Afzal, N., Abram, S., Lewis, B. R., Isseh, I., Haddad, R., Scott, C. G., Bailey, K. R., Liu, H. D., Rooke, T. W. & Kullo, I. J., Feb 1 2018, In : Vascular Medicine (United Kingdom). 23, 1, p. 23-31 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines

Soysal, E., Wang, J., Jiang, M., Wu, Y., Pakhomov, S., Liu, H. D. & Xu, H., Mar 1 2018, In : Journal of the American Medical Informatics Association. 25, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

33 Scopus citations

Clinical documentation variations and NLP system portability: A case study in asthma birth cohorts across institutions

Sohn, S., Wang, Y., Wi, C. I., Krusemark, E. A., Ryu, E., Ali, M. H., Juhn, Y. J. & Liu, H. D., Mar 1 2018, In : Journal of the American Medical Informatics Association. 25, 3, p. 353-359 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes

Son, J. H., Xie, G., Yuan, C., Ena, L., Li, Z., Goldstein, A., Huang, L., Wang, L., Shen, F., Liu, H., Mehl, K., Groopman, E. E., Marasa, M., Kiryluk, K., Gharavi, A. G., Chung, W. K., Hripcsak, G., Friedman, C., Weng, C. & Wang, K., Jul 5 2018, In : American journal of human genetics. 103, 1, p. 58-73 16 p.

Research output: Contribution to journalArticle

22 Scopus citations

Detecting pharmacovigilance signals combining electronic medical records with spontaneous reports: A case study of conventional disease-modifying antirheumatic drugs for rheumatoid arthritis

Wang, L., Rastegar-Mojarad, M., Ji, Z., Liu, S., Liu, K., Moon, S., Shen, F., Wang, Y., Yao, L., Davis, J. M. III. & Liu, H. D., Aug 7 2018, In : Frontiers in Pharmacology. 9, AUG, 875.

Research output: Contribution to journalArticle

2 Scopus citations

Electronic Health Record Phenotypes for Precision Medicine: Perspectives and Caveats From Treatment of Breast Cancer at a Single Institution

Breitenstein, M. K., Liu, H. D., Maxwell, K. N., Pathak, J. & Zhang, R., Jan 1 2018, In : Clinical and Translational Science. 11, 1, p. 85-92 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Extracting chemical-protein relations using attention-based neural networks

Liu, S., Shen, F., Komandur Elayavilli, R., Wang, Y., Rastegar-Mojarad, M., Chaudhary, V. & Liu, H., Jan 1 2018, In : Database. 2018, 2018

Research output: Contribution to journalArticle

6 Scopus citations

Impact of Patient Reminders on Papanicolaou Test Completion for High-Risk Patients Identified by a Clinical Decision Support System

Mac Laughlin, K., Kessler, M. E., Komandur Elayavilli, R., Hickey, B. C., Scheitel, M. R., Wagholikar, K. B., Liu, H. D., Kremers, W. K. & Chaudhry, R., May 1 2018, In : Journal of Women's Health. 27, 5, p. 569-574 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

Improving the Accuracy of a Clinical Decision Support System for Cervical Cancer Screening and Surveillance

Ravikumar, K. E., Mac Laughlin, K., Scheitel, M. R., Kessler, M., Wagholikar, K. B., Liu, H. D. & Chaudhry, R., Jan 1 2018, In : Applied Clinical Informatics. 9, 1, p. 62-71 10 p.

Research output: Contribution to journalArticle

2 Scopus citations
1 Scopus citations

Leveraging the electronic health record to create an automated real-time prognostic tool for peripheral arterial disease

Arruda-Olson, A. M., Afzal, N., Mallipeddi, V. P., Said, A., Pacha, H. M., Moon, S., Chaudhry, A. P., Scott, C. G., Bailey, K. R., Rooke, T. W., Wennberg, P. W., Kaggal, V. C., Oderich, G., Kullo, I. J., Nishimura, R. A., Chaudhry, R. & Liu, H. D., Dec 1 2018, In : Journal of the American Heart Association. 7, 23, e009680.

Research output: Contribution to journalArticle

3 Scopus citations

MedSTS: a resource for clinical semantic textual similarity

Wang, Y., Afzal, N., Fu, S., Wang, L., Shen, F., Rastegar-Mojarad, M. & Liu, H. D., Jan 1 2018, (Accepted/In press) In : Language Resources and Evaluation.

Research output: Contribution to journalArticle

3 Scopus citations

Modeling asynchronous event sequences with RNNs

Wu, S., Liu, S., Sohn, S., Moon, S., Wi, C. I., Juhn, Y. J. & Liu, H. D., Jul 1 2018, In : Journal of Biomedical Informatics. 83, p. 167-177 11 p.

Research output: Contribution to journalArticle

8 Scopus citations

Natural language processing of clinical notes for identification of critical limb ischemia

Afzal, N., Mallipeddi, V. P., Sohn, S., Liu, H. D., Chaudhry, R., Scott, C. G., Kullo, I. J. & Arruda-Olson, A. M., Mar 1 2018, In : International Journal of Medical Informatics. 111, p. 83-89 7 p.

Research output: Contribution to journalArticle

15 Scopus citations

Postoperative bleeding risk prediction for patients undergoing colorectal surgery

Chen, D., Afzal, N., Sohn, S., Habermann, E. B., Naessens, J. M., Larson, D. & Liu, H. D., Jan 1 2018, (Accepted/In press) In : Surgery (United States).

Research output: Contribution to journalArticle

Preliminary exploration of survival analysis using the OHDSI common data model: A case study of intrahepatic cholangiocarcinoma

Hong, N., Zhang, N., Wu, H., Lu, S., Yu, Y., Hou, L., Lu, Y., Liu, H. D. & Jiang, G. D., Dec 7 2018, In : BMC Medical Informatics and Decision Making. 18, 116.

Research output: Contribution to journalArticle

1 Scopus citations

Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP

Hong, N., Wen, A., Mojarad, M. R., Sohn, S., Liu, H. & Jiang, G., Jan 1 2018, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018, p. 574-583 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Systematic identification of latent disease-gene associations from PubMed articles

Zhang, Y., Shen, F., Mojarad, M. R., Li, D., Liu, S., Tao, C., Yu, Y. & Liu, H. D., Jan 1 2018, In : PLoS One. 13, 1, e0191568.

Research output: Contribution to journalArticle

10 Scopus citations

Ten-year trends in antiemetic prescribing in patients receiving highly emetogenic chemotherapy

O’Sullivan, C. C., Van Houten, H. K., Sangaralingham, L. R., Leal, A. D., Shinde, S., Liu, H. D., Ettinger, D., Loprinzi, C. L. & Ruddy, K. J., Mar 1 2018, In : JNCCN Journal of the National Comprehensive Cancer Network. 16, 3, p. 294-299 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

The Sublanguage of Clinical Problem Lists: A Corpus Analysis

Peterson, K. J. & Liu, H., Jan 1 2018, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018, p. 1451-1460 10 p.

Research output: Contribution to journalArticle

Usefulness of asthma predictive index in ascertaining asthma status of children using medical records: An explorative study

Wi, C. I., Krusemark, E. A., Voge, G., Sohn, S., Liu, H. D., Ryu, E., Park, M., Castro-Rodriguez, J. A. & Juhn, Y. J., Jan 1 2018, (Accepted/In press) In : Allergy: European Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

3 Scopus citations

Use of echocardiography in outpatients with chest pain and normal resting electrocardiograms referred to Mayo Clinic Rochester

Gibbons, R. J., Carryer, D., Liu, H. D., Brady, P. A., Askew, J. W., Hodge, D., Ammash, N., Ebbert, J. O. & Roger, V. L., Feb 1 2018, In : American Heart Journal. 196, p. 49-55 7 p.

Research output: Contribution to journalArticle

3 Scopus citations
2 Scopus citations
6 Scopus citations
2017

Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review

Wi, C. I., Sohn, S., Rolfes, M. C., Seabright, A., Ryu, E., Voge, G., Bachman, K. A., Park, M., Kita, H., Croghan, I. T., Liu, H. D. & Juhn, Y. J., Aug 15 2017, In : American Journal of Respiratory and Critical Care Medicine. 196, 4, p. 430-437 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

BELMiner: Adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences

Ravikumar, K. E., Rastegar-Mojarad, M. & Liu, H. D., Jan 1 2017, In : Database. 2017, 1, baw156.

Research output: Contribution to journalArticle

9 Scopus citations

Deep Learning Solutions for Classifying Patients on Opioid Use

Che, Z., St. Sauver, J., Liu, H. D. & Liu, Y., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 525-534 10 p.

Research output: Contribution to journalArticle

4 Scopus citations
16 Scopus citations

Distinction between medical and non-medical usages of short forms in clinical narratives

Moon, S., Ihrke, D., Zeng, Y. & Liu, H. D., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 1302-1311 10 p.

Research output: Contribution to journalArticle

Early genetic aberrations in patients with sporadic colorectal cancer

Druliner, B. R., Ruan, X., Sicotte, H., O'Brien, D., Liu, H. D., Kocher, J-P. & Boardman, L. A., 2017, (Accepted/In press) In : Molecular Carcinogenesis.

Research output: Contribution to journalArticle

5 Scopus citations

Effect of a novel clinical decision support tool on the efficiency and accuracy of treatment recommendations for cholesterol management

Scheitel, M. R., Kessler, M. E., Shellum, J. L., Peters, S. G., Milliner, D. S., Liu, H., Elayavilli, R. K., Poterack, K. A., Miksch, T. A., Boysen, J. J., Hankey, R. A. & Chaudhry, R., Jan 1 2017, In : Applied clinical informatics. 8, 1, p. 124-136 13 p.

Research output: Contribution to journalArticle

9 Scopus citations

Generalized ensemble model for document ranking in information retrieval

Wang, Y., Choi, I. C. & Liu, H. D., Jan 1 2017, In : Computer Science and Information Systems. 14, 1, p. 123-151 29 p.

Research output: Contribution to journalArticle

1 Scopus citations