• 4595 Citations
  • 36 Scopus h-Index
19992019

Research output per year

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Research Output

2018

Systematic identification of latent disease-gene associations from PubMed articles

Zhang, Y., Shen, F., Mojarad, M. R., Li, D., Liu, S., Tao, C., Yu, Y. & Liu, H. D., Jan 1 2018, In : PLoS One. 13, 1, e0191568.

Research output: Contribution to journalArticle

10 Scopus citations

Ten-year trends in antiemetic prescribing in patients receiving highly emetogenic chemotherapy

O’Sullivan, C. C., Van Houten, H. K., Sangaralingham, L. R., Leal, A. D., Shinde, S., Liu, H. D., Ettinger, D., Loprinzi, C. L. & Ruddy, K. J., Mar 1 2018, In : JNCCN Journal of the National Comprehensive Cancer Network. 16, 3, p. 294-299 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

The Sublanguage of Clinical Problem Lists: A Corpus Analysis

Peterson, K. J. & Liu, H., Jan 1 2018, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018, p. 1451-1460 10 p.

Research output: Contribution to journalArticle

Usefulness of asthma predictive index in ascertaining asthma status of children using medical records: An explorative study

Wi, C. I., Krusemark, E. A., Voge, G., Sohn, S., Liu, H. D., Ryu, E., Park, M., Castro-Rodriguez, J. A. & Juhn, Y. J., Jan 1 2018, (Accepted/In press) In : Allergy: European Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

3 Scopus citations

Use of echocardiography in outpatients with chest pain and normal resting electrocardiograms referred to Mayo Clinic Rochester

Gibbons, R. J., Carryer, D., Liu, H. D., Brady, P. A., Askew, J. W., Hodge, D., Ammash, N., Ebbert, J. O. & Roger, V. L., Feb 1 2018, In : American Heart Journal. 196, p. 49-55 7 p.

Research output: Contribution to journalArticle

3 Scopus citations
2 Scopus citations
6 Scopus citations
2017

Aligned-layer text search in clinical notes

Wu, S., Wen, A., Wang, Y., Liu, S. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 629-633 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analysis of clinical variations in asthma care documented in electronic health records between staff and resident physicians

Sohn, S., Wi, C. I., Juhn, Y. J. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 1170-1174 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Answering diabetic patients' questions using expert-vetted online resources: A case study

Zeng, Y., Liu, X., Wang, L., Liu, H. D. & Wang, Y., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 525-528 4 p. 7822575

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review

Wi, C. I., Sohn, S., Rolfes, M. C., Seabright, A., Ryu, E., Voge, G., Bachman, K. A., Park, M., Kita, H., Croghan, I. T., Liu, H. D. & Juhn, Y. J., Aug 15 2017, In : American Journal of Respiratory and Critical Care Medicine. 196, 4, p. 430-437 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

BELMiner: Adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences

Ravikumar, K. E., Rastegar-Mojarad, M. & Liu, H. D., Jan 1 2017, In : Database. 2017, 1, baw156.

Research output: Contribution to journalArticle

9 Scopus citations

Deep Learning Solutions for Classifying Patients on Opioid Use

Che, Z., St. Sauver, J., Liu, H. D. & Liu, Y., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 525-534 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature

Wang, Y., Wang, L., Liu, S., Shen, F., Liu, H., Rastegar-Mojarad, M. & Liu, F., Aug 20 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 36-43 8 p. (ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
16 Scopus citations

Distinction between medical and non-medical usages of short forms in clinical narratives

Moon, S., Ihrke, D., Zeng, Y. & Liu, H. D., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 1302-1311 10 p.

Research output: Contribution to journalArticle

Early genetic aberrations in patients with sporadic colorectal cancer

Druliner, B. R., Ruan, X., Sicotte, H., O'Brien, D., Liu, H. D., Kocher, J-P. & Boardman, L. A., 2017, (Accepted/In press) In : Molecular Carcinogenesis.

Research output: Contribution to journalArticle

5 Scopus citations

Effect of a novel clinical decision support tool on the efficiency and accuracy of treatment recommendations for cholesterol management

Scheitel, M. R., Kessler, M. E., Shellum, J. L., Peters, S. G., Milliner, D. S., Liu, H., Elayavilli, R. K., Poterack, K. A., Miksch, T. A., Boysen, J. J., Hankey, R. A. & Chaudhry, R., Jan 1 2017, In : Applied clinical informatics. 8, 1, p. 124-136 13 p.

Research output: Contribution to journalArticle

9 Scopus citations

Exploiting HPO to predict a ranked list of phenotype categories for livertox case reports

Overby, C. L., Raschid, L. & Liu, H. D., 2017, Data Management and Analytics for Medicine and Healthcare - 2nd International Workshop, DMAH 2016 Held at VLDB 2016, Revised Selected Papers. Springer Verlag, Vol. 10186 LNCS. p. 3-9 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10186 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Generalized ensemble model for document ranking in information retrieval

Wang, Y., Choi, I. C. & Liu, H. D., Jan 1 2017, In : Computer Science and Information Systems. 14, 1, p. 123-151 29 p.

Research output: Contribution to journalArticle

1 Scopus citations

Intrainstitutional EHR collections for patient-level information retrieval

Wu, S., Liu, S., Wang, Y., Timmons, T., Uppili, H., Bedrick, S., Hersh, W. & Liu, H. D., Nov 1 2017, In : Journal of the Association for Information Science and Technology. 68, 11, p. 2636-2648 13 p.

Research output: Contribution to journalArticle

3 Scopus citations

Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis

Shen, F., Liu, S., Wang, Y., Wang, L., Afzal, N. & Liu, H. D., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 1554-1563 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients

Moon, S., Liu, S., Kingsbury, P., Chen, D., Wang, Y., Shen, F., Chaudhry, R. & Liu, H. D., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 1495-1500 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Mining Hierarchies and Similarity Clusters from Value Set Repositories

Peterson, K. J., Jiang, G. D., Brue, S. M., Shen, F. & Liu, H. D., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 1372-1381 10 p.

Research output: Contribution to journalArticle

Need of informatics in designing interoperable clinical registries

Rastegar-Mojarad, M., Sohn, S., Wang, L., Shen, F., Bleeker, T. C., Cliby, W. A. & Liu, H. D., Dec 1 2017, In : International Journal of Medical Informatics. 108, p. 78-84 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

On Mapping Textual Queries to a Common Data Model

Liu, S., Wang, Y., Hong, N., Shen, F., Wu, S., Hersh, W. & Liu, H., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Cummins, M., Facelli, J., Meixner, G., Giraud-Carrier, C. & Nakajima, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 21-25 5 p. 8031127. (Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
6 Scopus citations

Phenotypic analysis of clinical narratives using human phenotype ontology

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 581-585 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Proton Pump Inhibitors and the Risk for Fracture at Specific Sites: Data Mining of the FDA Adverse Event Reporting System

Wang, L., Li, M., Cao, Y., Han, Z., Wang, X., Atkinson, E. J., Liu, H. D. & Amin, S., Dec 1 2017, In : Scientific Reports. 7, 1, 5527.

Research output: Contribution to journalArticle

14 Scopus citations

Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches

Zeng, Y., Liu, X., Wang, Y., Shen, F., Liu, S., Rastegar-Mojarad, M., Wang, L. & Liu, H. D., Oct 16 2017, In : Journal of Medical Internet Research. 19, 10, p. e342

Research output: Contribution to journalArticle

4 Scopus citations

Using human phenotype ontology for phenotypic analysis of clinical notes

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Using Unstructured Data to Identify Readmitted Patients

Rastegar-Mojarad, M., Lovely, J. K., Pankratz, J., Sohn, S., Ihrke, D. M., Merchea, A., Larson, D. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8031124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2016

A computational framework for converting textual clinical diagnostic criteria into the quality data model

Hong, N., Li, D., Yu, Y., Xiu, Q., Liu, H. D. & Jiang, G. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 11-21 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

A Part-Of-Speech term weighting scheme for biomedical information retrieval

Wang, Y., Wu, S., Li, D., Mehrabi, S. & Liu, H. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 379-389 11 p.

Research output: Contribution to journalArticle

18 Scopus citations

A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text

Li, D., Liu, S., Rastegar-Mojarad, M., Wang, Y., Chaudhary, V., Therneau, T. M. & Liu, H. D., 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 789-798 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

BELTracker: evidence sentence retrieval for BEL statements

Rastegar-Mojarad, M., Komandur Elayavilli, R. & Liu, H. D., 2016, In : Database : the journal of biological databases and curation. 2016

Research output: Contribution to journalArticle

3 Scopus citations

Clinical element models in the SHARPn consortium

Oniki, T. A., Zhuo, N., Beebe, C. E., Liu, H. D., Coyle, J. F., Parker, C. G., Solbrig, H. R., Marchant, K., Kaggal, V. C., Chute, C. G. & Huff, S. M., Mar 1 2016, In : Journal of the American Medical Informatics Association. 23, 2, p. 248-256 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Colorectal cancer with residual polyp of origin: A model of malignant transformation

Druliner, B. R., Rashtak, S., Ruan, X., Bae, T., Vasmatzis, N., O’Brien, D., Johnson, R., Felmlee-Devine, D., Washechek-Aletto, J., Basu, N., Liu, H., Smyrk, T., Abyzov, A. & Boardman, L. A., Aug 2016, In : Translational Oncology. 9, 4, p. 280-286 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Comparison of three information sources for smoking information in electronic health records

Wang, L., Ruan, X., Yang, P. & Liu, H. D., 2016, In : Cancer Informatics. 15, p. 237-242 6 p.

Research output: Contribution to journalReview article

6 Scopus citations

Identifying peripheral arterial disease cases using natural language processing of clinical notes

Afzal, N., Sohn, S., Abram, S., Liu, H. D., Kullo, I. J. & Arruda-Olson, A. M., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 126-131 6 p. 7455851

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes

Liu, S., Chaudhary, V., Wang, L. & Liu, H. D., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 302 1 p. 7776360

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach

Peterson, K. J., Jiang, G. D., Brue, S. M. & Liu, H. D., 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 1010-1019 10 p.

Research output: Contribution to journalArticle

MayoBMI at ImageCLEF 2016 handwritten document retrieval task

Liu, S., Wang, Y., Mehrabi, S., Li, D. & Liu, H. D., 2016, In : CEUR Workshop Proceedings. 1609, p. 347-355 9 p.

Research output: Contribution to journalArticle

MayoNLP at SemEval-2016 task 1: Semantic textual similarity based on lexical semantic net and deep learning semantic model

Afzal, N., Wang, Y. & Liu, H. D., Jan 1 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 674-679 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Scopus citations

MayoNLPTeam at the 2016 CLEF eHealth information retrieval task 1

Wang, Y., Wu, S. & Liu, H. D., 2016, In : CEUR Workshop Proceedings. 1609, p. 198-204 7 p.

Research output: Contribution to journalArticle

Mining peripheral arterial disease cases from narrative clinical notes using natural language processing

Afzal, N., Sohn, S., Abram, S., Scott, C. G., Chaudhry, R., Liu, H. D., Kullo, I. J. & Arruda-Olson, A. M., Aug 10 2016, (Accepted/In press) In : Journal of Vascular Surgery.

Research output: Contribution to journalArticle

16 Scopus citations

MutDR - A resource for protein mutation-disease relations assembled from biomedical literature

Elayavilli, R. K., Rastegar-Mojarad, M. & Liu, H. D., 2016, In : CEUR Workshop Proceedings. 1747

Research output: Contribution to journalArticle

Natural Language Processing for Asthma Ascertainment in Different Practice Settings

Wi, C. I., Sohn, S., Ali, M., Krusemark, E., Ryu, E., Liu, H. D. & Juhn, Y. J., Nov 9 2016, (Accepted/In press) In : Journal of Allergy and Clinical Immunology: In Practice.

Research output: Contribution to journalArticle

13 Scopus citations