• 4063 Citations
  • 35 Scopus h-Index
19992019
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Research Output 1999 2019

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Conference contribution
2019

Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility

Zhao, Y., Wang, Y., Wang, H., Yan, B., Shen, F., Peterson, K. J., Rocca, W. A., St. Sauver, J. & Liu, H. D., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1310-1317 8 p. 8621269. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Informatics
Electronic Health Records
Data structures
Health
Epidemiology
1 Citation (Scopus)

Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome

Peng, S., Fan, Y., Wang, L., Wen, A., Liu, X., Liu, H. D. & Shen, F., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1302-1309 8 p. 8621226. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Chronic Renal Insufficiency
Semantics
MEDLINE
Triglycerides
2018

A Comparison of Lifestyle Interventions for Alzheimer's Disease Extracted from Clinical Notes and Literature

Zhou, X., Liu, H. D. & Wang, Y., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 74-75 2 p. 8411812

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Life Style
Alzheimer Disease
Natural Language Processing
Magnesium Deficiency
Selenium

Advances in text mining and visualization for precision medicine

Gonzalez-Hernandez, G., Sarker, A., O’Connor, K., Greene, C. & Liu, H. D., Jan 1 2018, PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018. 212669 ed. World Scientific Publishing Co. Pte Ltd, p. 559-565 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medicine
Visualization
Fruits
Genes
Health

Automatic Extraction of Major Osteoporotic Fractures from Radiology Reports using Natural Language Processing

Wang, Y., Mehrabi, S., Sohn, S., Atkinson, E., Amin, S. & Liu, H. D., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 64-65 2 p. 8411807

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
Osteoporotic Fractures
Radiology
Wrist
Femur
1 Citation (Scopus)

BioCreative/OHNLP Challenge 2018

Rastegar-Mojarad, M., Liu, S., Wang, Y., Afzal, N., Wang, L., Shen, F., Fu, S. & Liu, H. D., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
Confidentiality
Processing
Education
Information Storage and Retrieval
3 Citations (Scopus)

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement

Shen, F., Liu, S., Wang, Y., Wang, L., Wen, A., Limper, A. H. & Liu, H. D., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 29-33 5 p. 8411677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phenotype
Idiopathic Pulmonary Fibrosis
Precision Medicine
Vocabulary
Node

Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision

Wang, L., Rastegar-Mojarad, M., Komandur Elayavilli, R. K. E., Wang, Y. & Liu, H. D., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-8 8 p. 8411674

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Causality
Cataloging
Precision Medicine
Inborn Genetic Diseases
Neoplasm Genes

Predicting Practice Setting Using Topic Modeling

Wang, L., Wang, Y., Shen, F., Rastegar-Mojarad, M. & Liu, H. D., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 62-63 2 p. 8411806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient Care
Modeling
Leverage
2017

Aligned-layer text search in clinical notes

Wu, S., Wen, A., Wang, Y., Liu, S. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 629-633 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information retrieval
Natural Language Processing
Natural language processing systems
Information Storage and Retrieval
Health
1 Citation (Scopus)

Analysis of clinical variations in asthma care documented in electronic health records between staff and resident physicians

Sohn, S., Wi, C. I., Juhn, Y. J. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 1170-1174 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Asthma
Health
Physicians
Documentation

Answering diabetic patients' questions using expert-vetted online resources: A case study

Zeng, Y., Liu, X., Wang, L., Liu, H. D. & Wang, Y., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 525-528 4 p. 7822575

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Medical problems
Processing
MedlinePlus
Unified Medical Language System
8 Citations (Scopus)

Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature

Wang, Y., Wang, L., Liu, S., Shen, F., Liu, H. D., Rastegar-Mojarad, M. & Liu, F., Aug 20 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 36-43 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Drug Interactions
Syntactics
Pharmaceutical Preparations
Support vector machines

Exploiting HPO to predict a ranked list of phenotype categories for livertox case reports

Overby, C. L., Raschid, L. & Liu, H. D., 2017, Data Management and Analytics for Medicine and Healthcare - 2nd International Workshop, DMAH 2016 Held at VLDB 2016, Revised Selected Papers. Springer Verlag, Vol. 10186 LNCS. p. 3-9 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10186 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phenotype
Liver
Ontology
Drugs
Predict
2 Citations (Scopus)

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients

Moon, S., Liu, S., Kingsbury, P., Chen, D., Wang, Y., Shen, F., Chaudhry, R. & Liu, H. D., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 1495-1500 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Facsimile
Optical character recognition
Consultants
Medical Records
Health
1 Citation (Scopus)

On Mapping Textual Queries to a Common Data Model

Liu, S., Wang, Y., Hong, N., Shen, F., Wu, S., Hersh, W. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 21-25 5 p. 8031127

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Information Storage and Retrieval
Semantics
Research
5 Citations (Scopus)

Phenotypic analysis of clinical narratives using human phenotype ontology

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 581-585 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Phenotype
Medicine
Data mining
Precision Medicine
6 Citations (Scopus)

Using human phenotype ontology for phenotypic analysis of clinical notes

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Phenotype
Vocabulary
Genotype

Using Unstructured Data to Identify Readmitted Patients

Rastegar-Mojarad, M., Lovely, J. K., Pankratz, J., Sohn, S., Ihrke, D. M., Merchea, A., Larson, D. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8031124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient Readmission
Electronic Health Records
Ambulatory Surgical Procedures
Datasets
2016
4 Citations (Scopus)

Identifying peripheral arterial disease cases using natural language processing of clinical notes

Afzal, N., Sohn, S., Abram, S., Liu, H. D., Kullo, I. J. & Arruda-Olson, A. M., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 126-131 6 p. 7455851

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
Peripheral Arterial Disease
Patient Care
Chronic Disease
Research

LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes

Liu, S., Chaudhary, V., Wang, L. & Liu, H. D., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 302 1 p. 7776360

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Glucose
Health
Medical problems
electronics
11 Citations (Scopus)

MayoNLP at SemEval-2016 task 1: Semantic textual similarity based on lexical semantic net and deep learning semantic model

Afzal, N., Wang, Y. & Liu, H. D., Jan 1 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 674-679 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Similarity
Semantics
Weighted Mean
Model
Assign

On developing resources for patient-level information retrieval

Wu, S., Timmons, T., Yates, A., Wang, M., Bedrick, S., Hersh, W. & Liu, H. D., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 3412-3416 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

information retrieval
resources
privacy
innovation research
paradigm
4 Citations (Scopus)

Prioritizing adverse drug reaction and drug repositioning candidates generated by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Wang, L., Prasad, R. & Liu, H. D., Oct 2 2016, ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 289-296 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature Based Discovery
Drug Repositioning
Drug-Related Side Effects and Adverse Reactions
Classifiers
Pharmaceutical Preparations
1 Citation (Scopus)

Staggered NLP-assisted refinement for clinical annotations of chronic disease events

Wu, S. T., Wi, C. I., Sohn, S., Liu, H. D. & Juhn, Y. J., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 426-429 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Disease
event
Natural Language Processing
Annotation
Chronic Disease
1 Citation (Scopus)

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
2015

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing

Li, D., Rastegar Mojarad, M., Li, Y., Sohn, S., Mehrabi, S., Komandur Elayavilli, R., Yu, Y. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1033-1034 2 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crowdsourcing
Health
Confidentiality
1 Citation (Scopus)

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Li, D., Rastegar-Mojarad, M., Elayavilli, R. K., Wang, Y., Mehrabi, S., Yu, Y., Sohn, S., Li, Y., Afzal, N. & Liu, H. D., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 315-324 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health
Natural Language Processing
Electronic medical equipment
Electronic Health Records
Information Dissemination
7 Citations (Scopus)

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Li, D., Prasad, R. & Liu, H. D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 669-674 6 p. 7359766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature Based Discovery
Drug Repositioning
Genes
Pharmaceutical Preparations
Toxicogenetics
1 Citation (Scopus)

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature
Pharmaceutical Preparations
Toxicogenetics
Semantics
Databases
6 Citations (Scopus)

BmQGen: Biomedical query generator for knowledge discovery

Shen, F., Liu, H. D., Sohn, S., Larson, D. & Lee, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1092-1097 6 p. 7359833

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Data mining
Ontology
Translational Medical Research
Biological Science Disciplines
6 Citations (Scopus)

Identification of Patients with Family History of Pancreatic Cancer-Investigation of an NLP System Portability

Mehrabi, S., Krishnan, A., Roch, A. M., Schmidt, H., Li, D., Kesterson, J., Beesley, C., Dexter, P., Schmidt, M., Palakal, M. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 604-608 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural language processing systems
Natural Language Processing
Pancreatic Neoplasms
Information Management
Information Storage and Retrieval
2 Citations (Scopus)

Retrieval of Semantically Similar Healthcare Questions in Healthcare Forums

Wang, Y., Mehrabi, S., Mojarad, M. R., Li, D. & Liu, H. D., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 517-518 2 p. 7349758

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Unified Medical Language System
Delivery of Health Care
Semantics
15 Citations (Scopus)

Temporal Pattern and Association Discovery of Diagnosis Codes Using Deep Learning

Mehrabi, S., Sohn, S., Li, D., Pankratz, J. J., Therneau, T. M., St. Sauver, J., Liu, H. D. & Palakal, M., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 408-416 9 p. 7349719

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning
Health Status
Disease Progression
Epidemiology
Weights and Measures
2014

An author topic analysis of tobacco regulation investigators

Li, D. C., Okamoto, J., Leischow, S. & Liu, H. D., 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8643. p. 616-627 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tobacco
Bibliometrics
Smoking
Citations
Modeling

An author topic analysis on NCI DCP/DCCPS PIs

Li, D., Okamoto, J., Liu, H. D. & Leischow, S., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 607-608 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Research Personnel
Bibliometrics
Neoplasms
Population Control
Administrative Personnel
1 Citation (Scopus)

Cancer based pharmacogenomics network for drug repurposing

Wang, L., Liu, H. D., Chute, C. G. & Zhu, Q., 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8643. p. 639-651 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug therapy
Cancer
Drugs
Genes
Drug Discovery
2 Citations (Scopus)

Challenges in adapting text mining for full text articles to assist pathway curation

Ravikumar, K. E., Wagholikar, K. B. & Liu, H. D., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 551-558 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data Mining
Processing
Databases
PubMed

Evidence based computational drug repositioning candidate screening pipeline design: Case Study

Zhu, Q., Liu, H. D., Zhang, Y. & Wang, J., Dec 17 2014, International Conference on Systems Biology, ISB. IEEE Computer Society, p. 210-218 9 p. 6990757

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug Repositioning
Screening
Drugs
Pipelines
Pharmaceutical Preparations
1 Citation (Scopus)

Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study

Zhu, Q., Liu, H. D., Chute, C. G. & Ferber, M., Dec 29 2014, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Institute of Electrical and Electronics Engineers Inc., p. 574-577 4 p. 6999223

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge Bases
Genetic Testing
Testing
Electronic Health Records
Health
1 Citation (Scopus)

Mining severe drug-drug interaction adverse events using semantic web technologies: A case study

Jiang, G. D., Liu, H. D., Solbrig, H. R. & Chute, C. G., 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8643. p. 628-638 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Semantic Web
Mining
Drugs
Interaction
2 Citations (Scopus)

Towards a multi-level framework for supporting systematic review - A pilot study

Li, D., Wang, Z., Shen, F., Murad, M. H. & Liu, H. D., Dec 29 2014, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Institute of Electrical and Electronics Engineers Inc., p. 43-50 8 p. 6999266

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Screening
Librarians
Evidence-Based Medicine
Electric network analysis

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data

Shen, F., Li, D., Liu, H. D., Lee, Y., Pathak, J., Chute, C. G. & Tao, C., 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. IEEE Computer Society, p. 531-534 4 p. 6864419

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Semantic Web
Semantics
Health
Technology
2013

Analysis of vaccine-related networks using semantic medline and the vaccine ontology

Zhang, Y., Tao, C., He, Y., Kanjamala, P. & Liu, H. D., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1061.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Vaccines
Ontology
Semantics
Genes
Public health
5 Citations (Scopus)

An incremental approach to MEDLINE MeSH indexing

Zhu, D., Li, D., Carterette, B. & Liu, H. D., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1094.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labeling
Information retrieval
Ontology
Labels
Classifiers
7 Citations (Scopus)

An integrative computational approach to identify disease-specific networks from PubMed literature information

Zhang, Y., Li, D., Tao, C., Shen, F. & Liu, H. D., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 72-75 4 p. 6732738

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Processing
Genes
Information use
Complex networks
Bioinformatics
2 Citations (Scopus)

Automatic identification of comparative effectiveness research from medline citations to support clinicians' treatment information needs

Zhang, M., Del Fiol, G., Grout, R. W., Jonnalagadda, S., Medlin, R., Mishra, R., Weir, C., Liu, H. D., Mostafa, J. & Fiszman, M., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 846-850 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Comparative Effectiveness Research
Point-of-Care Systems
Natural Language Processing
Therapeutics
Metadata
9 Citations (Scopus)

Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic Web technologies

Jiang, G. D., Wang, L., Liu, H. D., Solbrig, H. R. & Chute, C. G., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 496-500 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge Bases
Terminology
Semantic Web
Drug-Related Side Effects and Adverse Reactions
Semantics

Integrated cTAKES for concept mention detection and normalization

Liu, H. D., Wagholikar, K., Jonnalagadda, S. & Sohn, S., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1179.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Semantics
Labeling
Learning systems
4 Citations (Scopus)

MayoClinicNLP–CORE: Semantic representations for textual similarity

Wu, S., Zhu, D., Carterette, B. & Liu, H. D., Jan 1 2013, *SEM 2013 - 2nd Joint Conference on Lexical and Computational Semantics. Association for Computational Linguistics (ACL), Vol. 1. p. 148-154 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Similarity
Semantics
Linear Regression Model
Feature Selection
Baseline