• 4595 Citations
  • 36 Scopus h-Index
19992019

Research output per year

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Research Output

A bibliometric analysis on tobacco regulation investigators

Li, D., Okamoto, J., Liu, H. D. & Leischow, S., Mar 21 2015, In : BioData Mining. 8, 1, 11.

Research output: Contribution to journalArticle

6 Scopus citations
4 Scopus citations

A common type system for clinical natural language processing

Wu, S. T., Kaggal, V. C., Dligach, D., Masanz, J. J., Chen, P., Becker, L., Chapman, W. W., Savova, G. K., Liu, H. & Chute, C. G., Jan 3 2013, In : Journal of Biomedical Semantics. 4, 1, 1.

Research output: Contribution to journalArticle

13 Scopus citations

A Comparison of Lifestyle Interventions for Alzheimer's Disease Extracted from Clinical Notes and Literature

Zhou, X., Liu, H. & Wang, Y., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 74-75 2 p. 8411812. (Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A comparison of word embeddings for the biomedical natural language processing

Wang, Y., Liu, S., Afzal, N., Rastegar-Mojarad, M., Wang, L., Shen, F., Kingsbury, P. & Liu, H. D., Nov 1 2018, In : Journal of Biomedical Informatics. 87, p. 12-20 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

A comparison study of biomedical short form definition detection algorithms

Torii, M., Liu, H., Hu, Z. & Wu, C., Dec 1 2006, CIKM 2006 Workshop - Proceedings of TMBIO 2006: ACM First International Workshop on Text Mining in Bioinformatics. p. 52-59 8 p. (Proceedings of TMBIO 2006: ACM First International Workshop on Text Mining in Bioinformatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A comparison study on algorithms of detecting long forms for short forms in biomedical text

Torii, M., Hu, Z. Z., Song, M., Wu, C. H. & Liu, H., Nov 27 2007, In : BMC bioinformatics. 8, SUPPL. 9, S5.

Research output: Contribution to journalArticle

22 Scopus citations

A computational framework for converting textual clinical diagnostic criteria into the quality data model

Hong, N., Li, D., Yu, Y., Xiu, Q., Liu, H. D. & Jiang, G. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 11-21 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

Advances in text mining and visualization for precision medicine

Gonzalez-Hernandez, G., Sarker, A., O’Connor, K., Greene, C. & Liu, H. D., Jan 1 2018, PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018. 212669 ed. World Scientific Publishing Co. Pte Ltd, p. 559-565 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

AffyProbeMiner: A web resource for computing or retrieving accurately redefined Affymetrix probe sets

Liu, H., Zeeberg, B. R., Qu, G., Koru, A. G., Ferrucci, A., Kahn, A., Ryan, M. C., Nuhanovic, A., Munson, P. J., Reinhold, W. C., Kane, D. W. & Weinstein, J. N., Sep 15 2007, In : Bioinformatics. 23, 18, p. 2385-2390 6 p.

Research output: Contribution to journalArticle

57 Scopus citations

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing

Li, D., Rastegar Mojarad, M., Li, Y., Sohn, S., Mehrabi, S., Komandur Elayavilli, R., Yu, Y. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1033-1034 2 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Li, D., Rastegar-Mojarad, M., Elayavilli, R. K., Wang, Y., Mehrabi, S., Yu, Y., Sohn, S., Li, Y., Afzal, N. & Liu, H. D., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 315-324 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Aligned-layer text search in clinical notes

Wu, S., Wen, A., Wang, Y., Liu, S. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 629-633 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

AMP kinase-related kinase NUAK2 affects tumor growth, migration, and clinical outcome of human melanoma

Namiki, T., Tanemura, A., Valencia, J. C., Coelho, S. G., Passeron, T., Kawaguchi, M., Vieira, W. D., Ishikawa, M., Nishijima, W., Izumo, T., Kaneko, Y., Katayama, I., Yamaguchi, Y., Yin, L., Polley, E. C., Liu, H., Kawakami, Y., Eishi, Y., Takahashi, E., Yokozeki, H. & 1 others, Hearing, V. J., Apr 19 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 16, p. 6597-6602 6 p.

Research output: Contribution to journalArticle

31 Scopus citations

A multi-aspect comparison study of supervised word sense disambiguation

Liu, H., Teller, V. & Friedman, C., Jul 1 2004, In : Journal of the American Medical Informatics Association. 11, 4, p. 320-331 12 p.

Research output: Contribution to journalArticle

51 Scopus citations

Analysis of clinical variations in asthma care documented in electronic health records between staff and resident physicians

Sohn, S., Wi, C. I., Juhn, Y. J. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 1170-1174 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
1 Scopus citations

Analysis of microarray titration experiments

Bebu, I., Seillier-Moiseiwitsch, F. & Liu, H., Dec 1 2008, Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008. p. 942-946 5 p. (Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analysis of vaccine-related networks using semantic medline and the vaccine ontology

Zhang, Y., Tao, C., He, Y., Kanjamala, P. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

An author topic analysis of tobacco regulation investigators

Li, D. C., Okamoto, J., Leischow, S. & Liu, H., Jan 1 2014, Trends and Applications in Knowledge Discovery and Data Mining - PAKDD 2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD, MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA, Revised Selected Papers. Peng, W-C., Wang, H., Zhou, Z-H., Ho, T. B., Tseng, V. S., Chen, A. L. P. & Bailey, J. (eds.). Springer Verlag, p. 616-627 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An author topic analysis on NCI DCP/DCCPS PIs

Li, D., Okamoto, J., Liu, H. & Leischow, S., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 607-608 2 p. (ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An automated approach for ranking journals to help in clinician decision support

Jonnalagadda, S. R., Moosavinasab, S., Nath, C., Li, D., Chute, C. G. & Liu, H. D., 2014, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2014, p. 757-766 10 p.

Research output: Contribution to journalArticle

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Li, D., Prasad, R. & Liu, H. D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 669-674 6 p. 7359766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics

Torii, M., Yin, L., Nguyen, T., Mazumdar, C. T., Liu, H., Hartley, D. M. & Nelson, N. P., Jan 1 2011, In : International Journal of Medical Informatics. 80, 1, p. 56-66 11 p.

Research output: Contribution to journalArticle

32 Scopus citations

An exploratory study of news article clustering for web-based bio-surveillance

Torii, M., Bayarsaikhan, B. U., Liu, H., Nguyen, T., Jones, K., Nelson, N. P. G. & Hartley, D. M., Dec 1 2010, IHI'10 - Proceedings of the 1st ACM International Health Informatics Symposium. p. 435-439 5 p. (IHI'10 - Proceedings of the 1st ACM International Health Informatics Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An incremental approach to MEDLINE MeSH indexing

Zhu, D., Li, D., Carterette, B. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1094

Research output: Contribution to journalConference article

5 Scopus citations

An integrative computational approach to identify disease-specific networks from PubMed literature information

Zhang, Y., Li, D., Tao, C., Shen, F. & Liu, H., Dec 1 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 72-75 4 p. 6732738. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

An investigation into the functional form of the size-defect relationship for software modules

Koru, A. G., Zhang, D., El Emam, K. & Liu, H., Mar 23 2009, In : IEEE Transactions on Software Engineering. 35, 2 SPEC. ISS., p. 293-304 12 p.

Research output: Contribution to journalArticle

90 Scopus citations

An investigation of the effect of module size on defect prediction using static measures

Koru, A. G. & Liu, H. D., May 15 2005, Proceedings of the 2005 Workshop on Predictor Models in Software Engineering, PROMISE 2005. Association for Computing Machinery, Inc, a7

Research output: Chapter in Book/Report/Conference proceedingConference contribution

45 Scopus citations

Annotating breast cancer microarray samples using ontologies.

Liu, H., Li, X., Yoon, V. & Clarke, R., 2008, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. p. 414-418 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility

Zhao, Y., Wang, Y., Wang, H., Yan, B., Shen, F., Peterson, K. J., Rocca, W. A., St. Sauver, J. & Liu, H. D., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1310-1317 8 p. 8621269. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Answering diabetic patients' questions using expert-vetted online resources: A case study

Zeng, Y., Liu, X., Wang, L., Liu, H. D. & Wang, Y., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 525-528 4 p. 7822575

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Part-Of-Speech term weighting scheme for biomedical information retrieval

Wang, Y., Wu, S., Li, D., Mehrabi, S. & Liu, H. D., Oct 1 2016, In : Journal of Biomedical Informatics. 63, p. 379-389 11 p.

Research output: Contribution to journalArticle

18 Scopus citations

Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review

Wi, C. I., Sohn, S., Rolfes, M. C., Seabright, A., Ryu, E., Voge, G., Bachman, K. A., Park, M., Kita, H., Croghan, I. T., Liu, H. D. & Juhn, Y. J., Aug 15 2017, In : American Journal of Respiratory and Critical Care Medicine. 196, 4, p. 430-437 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

A privacy-preserving distributed filtering framework for NLP artifacts

Sadat, M. N., Aziz, M. M. A., Mohammed, N., Pakhomov, S., Liu, H. & Jiang, X., Sep 7 2019, In : BMC Medical Informatics and Decision Making. 19, 1, 183.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network

Bielinski, S. J., Pathak, J., Carrell, D. S., Takahashi, P. Y., Olson, J. E., Larson, N., Liu, H. D., Sohn, S., Wells, Q. S., Denny, J. C., Rasmussen-Torvik, L. J., Pacheco, J. A., Jackson, K. L., Lesnick, T. G., Gullerud, R. E., Decker, P. A., Pereira, N. L., Ryu, E., Dart, R. A., Peissig, P. & 7 others, Linneman, J. G., Jarvik, G. P., Larson, E. B., Bock, J. A., Tromp, G. C., De Andrade, M. & Roger, V. L., Jul 21 2015, (Accepted/In press) In : Journal of Cardiovascular Translational Research.

Research output: Contribution to journalArticle

11 Scopus citations

Ascertainment of asthma prognosis using natural language processing from electronic medical records

Sohn, S., Wi, C. I., Wu, S. T., Liu, H. D., Ryu, E., Krusemark, E., Seabright, A., Voge, G. A. & Juhn, Y. J., Jan 1 2018, (Accepted/In press) In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

5 Scopus citations

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
3 Scopus citations

Association of Ankle-Brachial Indices With Limb Revascularization or Amputation in Patients With Peripheral Artery Disease

Moussa Pacha, H., Mallipeddi, V. P., Afzal, N., Moon, S., Kaggal, V. C., Kalra, M., Oderich, G. S., Wennberg, P. W., Rooke, T. W., Scott, C. G., Kullo, I. J., McBane, R. D., Nishimura, R. A., Chaudhry, R., Liu, H. & Arruda-Olson, A. M., Dec 7 2018, In : JAMA Network Open. 1, 8, p. e185547

Research output: Contribution to journalArticle

Open Access

A study of abbreviations in MEDLINE abstracts.

Liu, H., Aronson, A. R. & Friedman, C., 2002, In : Proceedings / AMIA ... Annual Symposium. AMIA Symposium. p. 464-468 5 p.

Research output: Contribution to journalArticle

44 Scopus citations

A study of abbreviations in the UMLS.

Liu, H., Lussier, Y. A. & Friedman, C., 2001, In : Proceedings / AMIA ... Annual Symposium. AMIA Symposium. p. 393-397 5 p.

Research output: Contribution to journalArticle

36 Scopus citations

A study of transportability of an existing smoking status detection module across institutions.

Liu, M., Shah, A., Jiang, M., Peterson, N. B., Dai, Q., Aldrich, M. C., Chen, Q., Bowton, E. A., Liu, H., Denny, J. C. & Xu, H., 2012, In : Unknown Journal. 2012, p. 577-586 10 p.

Research output: Contribution to journalArticle

23 Scopus citations

A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text

Li, D., Liu, S., Rastegar-Mojarad, M., Wang, Y., Chaudhary, V., Therneau, T. M. & Liu, H. D., 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 789-798 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

Automated chart review for asthma cohort identification using natural language processing: An exploratory study

Wu, S. T., Sohn, S., Ravikumar, K. E., Wagholikar, K., Jonnalagadda, S. R., Liu, H. & Juhn, Y. J., Nov 1 2013, In : Annals of Allergy, Asthma and Immunology. 111, 5, p. 364-369 6 p.

Research output: Contribution to journalArticle

32 Scopus citations

Automated chart review utilizing natural language processing algorithm for asthma predictive index

Kaur, H., Sohn, S., Wi, C. I., Ryu, E., Park, M. A., Bachman, K., Kita, H., Croghan, I., Castro-Rodriguez, J. A., Voge, G. A., Liu, H. & Juhn, Y. J., Feb 13 2018, In : BMC Pulmonary Medicine. 18, 1, 34.

Research output: Contribution to journalArticle

9 Scopus citations

Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing

Moon, S., Liu, S., Scott, C. G., Samudrala, S., Abidian, M. M., Geske, J. B., Noseworthy, P., Shellum, J. L., Chaudhry, R., Ommen, S. R., Nishimura, R. A., Liu, H. D. & Arruda-Olson, A. M., Aug 1 2019, In : International Journal of Medical Informatics. 128, p. 32-38 7 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Automated recommendation for cervical cancer screening and surveillance

Wagholikar, K. B., Aclaughlin, K. L., Casey, P., Kastner, T., Henry, M., Hankey, R., Peters, S. G., Greenes, R., Chute, C. G., Liu, H. & Chaudhry, R., Oct 15 2014, In : Cancer Informatics. 13

Research output: Contribution to journalArticle

3 Scopus citations