• 4026 Citations
  • 28 Scopus h-Index
20032019

Research output per year

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Research Output

2019

Integrated RNA-seq and ChIP-seq analysis reveals a feed-forward loop regulating H3K9ac and key labor drivers in human placenta

Wang, B., Wang, P., Parobchak, N., Treff, N., Tao, X., Wang, J. & Rosen, T., Jan 15 2019, In : Placenta. 76, p. 40-50 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

MetaMarker: A pipeline for de novo discovery of novel metagenomic biomarkers

Koohi-Moghadam, M., Borad, M. J., Tran, N. L., Swanson, K. R., Boardman, L. A., Sun, H. & Wang, J., Oct 1 2019, In : Bioinformatics. 35, 19, p. 3812-3814 3 p.

Research output: Contribution to journalArticle

Next-Generation Sequencing in Human Genetic Studies: Genome Technologies and Applications to Human Genetic Studies

Wang, J., Wang, K., Liu, X., Sham, P. & Zhao, Z., Feb 1 2019, In : Human Heredity. 83, 3, p. 105-106 2 p.

Research output: Contribution to journalEditorial

Open Access
2018

Colonoscopy surveillance for high risk polyps does not always prevent colorectal cancer

Mouchli, M. A., Ouk, L., Scheitel, M. R., Chaudhry, A. P., Felmlee-Devine, D., Grill, D. E., Rashtak, S., Wang, P., Wang, J., Chaudhry, R., Smyrk, T. C., Oberg, A. L., Druliner, B. R. & Boardman, L. A., Feb 28 2018, In : World Journal of Gastroenterology. 24, 8, p. 905-916 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

Discovery of surface target proteins linking drugs, molecular markers, gene regulation, protein networks, and disease by using a web-based platform targets-search

Yan, B., Wang, P., Wang, J. & Boheler, K. R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1722. p. 331-344 14 p. (Methods in Molecular Biology; vol. 1722).

Research output: Chapter in Book/Report/Conference proceedingChapter

Erratum: Author Correction: UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq (Scientific reports (2017) 7 1 (14196))

Sun, Z., Nair, A., Chen, X., Prodduturi, N., Wang, J. & Kocher, J. P., Mar 20 2018, In : Scientific reports. 8, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access
1 Scopus citations

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

Yip, S. H., Sham, P. C. & Wang, J., Mar 27 2018, In : Briefings in bioinformatics. 20, 4, p. 1583-1589 7 p.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

GWAS4D: Multidimensional analysis of context-specific regulatory variant for human complex diseases and traits

Huang, D., Yi, X., Zhang, S., Zheng, Z., Wang, P., Xuan, C., Sham, P. C., Wang, J. & Li, M. J., Jul 2 2018, In : Nucleic Acids Research. 46, W1, p. W114-W120

Research output: Contribution to journalArticle

6 Scopus citations

Hybrid-denovo: A de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags

Chen, X., Johnson, S., Jeraldo, P., Wang, J., Chia, N., Kocher, J. P. A. & Chen, J., Mar 1 2018, In : GigaScience. 7, 3, p. 1-7 7 p.

Research output: Contribution to journalComment/debate

17 Scopus citations

Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution

Yang, S., Wang, J. & Ng, R. T., Mar 12 2018, In : BMC Bioinformatics. 19, 1, 96.

Research output: Contribution to journalArticle

Integrated transcriptomic and regulatory network analyses identify microRNA-200c as a novel repressor of human pluripotent stem cell-derived cardiomyocyte differentiation and maturation

Poon, E. N. Y., Hao, B., Guan, D., Jun Li, M., Lu, J., Yang, Y., Wu, B., Wu, S. C. M., Webb, S. E., Liang, Y., Miller, A. L., Yao, X., Wang, J., Yan, B. & Boheler, K. R., May 1 2018, In : Cardiovascular Research. 114, 6, p. 894-906 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Metallochaperone UreG serves as a new target for design of urease inhibitor: A novel strategy for development of antimicrobials

Yang, X., Koohi-Moghadam, M., Wang, R., Chang, Y. Y., Woo, P. C. Y., Wang, J., Li, H. & Sun, H., Jan 1 2018, In : PLoS Biology. 16, 1, e2003887.

Research output: Contribution to journalArticle

13 Scopus citations

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations

Druliner, B. R., Wang, P., Bae, T., Baheti, S., Slettedahl, S., Mahoney, D., Vasmatzis, N., Xu, H., Kim, M., Bockol, M., O'Brien, D., Grill, D., Warner, N., Munoz-Gomez, M., Kossick, K., Johnson, R., Mouchli, M., Felmlee-Devine, D., Washechek-Aletto, J., Smyrk, T. C. & 6 others, Oberg, A. L., Wang, J., Chia, N. D., Abyzov, A., Ahlquist, D. & Boardman, L. A., Dec 1 2018, In : Scientific Reports. 8, 1, 3161.

Research output: Contribution to journalArticle

5 Scopus citations

Novel Neural Network Approach to Predict Drug-Target Interactions Based on Drug Side Effects and Genome-Wide Association Studies

Prinz, J., Koohi-Moghadam, M., Sun, H., Kocher, J-P. & Wang, J., Jan 1 2018, (Accepted/In press) In : Human Heredity. p. 79-91 13 p.

Research output: Contribution to journalArticle

2017

Absence of NUCKS augments paracrine effects of mesenchymal stem cells-mediated cardiac protection

Zhang, Y., Chiu, S., Liang, X., Chai, Y. H., Qin, Y., Wang, J., Li, X., Qiu, B., Tergaonkar, V., Tse, H. F. & Lian, Q., Jul 1 2017, In : Experimental Cell Research. 356, 1, p. 74-84 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

Activation of E-prostanoid 3 receptor in macrophages facilitates cardiac healing after myocardial infarction

Yu, Y., Tang, J., Shen, Y., Chen, G., Wan, Q., Wang, K., Zhang, J., Qin, J., Liu, G., Zuo, S., Tao, B., Yu, Y., Wang, J. & Lazarus, M., Mar 3 2017, In : Nature Communications. 8, 14656.

Research output: Contribution to journalArticle

9 Scopus citations

An integrative method to decode regulatory logics in gene transcription

Yan, B., Guan, D., Wang, C., Wang, J., He, B., Qin, J., Boheler, K. R., Lu, A., Zhang, G. & Zhu, H., Dec 1 2017, In : Nature Communications. 8, 1, 1044.

Research output: Contribution to journalArticle

9 Scopus citations

Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations

Seow, W. J., Matsuo, K., Hsiung, C. A., Shiraishi, K., Song, M., NamKim, H., Wong, M. P., Hong, Y. C., Dean Hosgood, H., Wang, Z., Chang, I. S., Wang, J. C., Chatterjee, N., Tucker, M., Wei, H., Mitsudomi, T., Zheng, W., Kim, J. H., Zhou, B., Caporaso, N. E. & 166 others, Albanes, D., Shin, M. H., Chung, L. P., An, S. J., Wang, P., Zheng, H., Yatabe, Y., Zhang, X. C., Kim, Y. T., Shu, X. O., Kim, Y. C., Bassig, B. A., Chang, J., Man Ho, J. C., Ji, B. T., Kubo, M., Daigo, Y., Ito, H., Momozawa, Y., Ashikawa, K., Kamatani, Y., Honda, T., Sakamoto, H., Kunitoh, H., Tsuta, K., Watanabe, S. I., Nokihara, H., Miyagi, Y., Nakayama, H., Matsumoto, S., Tsuboi, M., Goto, K., Yin, Z., Shi, J., Takahashi, A., Goto, A., Minamiya, Y., Shimizu, K., Tanaka, K., Wu, T., Wei, F., Wong, J. Y. Y., Matsuda, F., Su, J., Kim, Y. H., Oh, I. J., Song, F., Lee, V. H. F., Su, W. C., Chen, Y. M., Chang, G. C., Chen, K. Y., Huang, M. S., Yang, P. C., Lin, H. C., Xiang, Y. B., Seow, A., Park, J. Y., Kweon, S. S., Chen, C. J., Li, H., Gao, Y. T., Wu, C., Qian, B., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Wang, W. C., Chung, C. C., Lawrence, C., Burdett, L., Yeager, M., Jacobs, K. B., Hutchinson, A., Berndt, S. I., He, X., Wu, W., Wang, J., Li, Y., Choi, J. E., Park, K. H., Sung, S. W., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Yang, T. Y., Xu, J., Guan, P., Tan, W., Wang, C. L., Loon Sihoe, A. D., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Chen, C. Y., Vermeulen, R., Wu, J., Lim, W. Y., Chen, K. C., Chan, J. K. C., Chu, M., Li, Y. J., Li, J., Chen, H., Yu, C. J., Jin, L., Lo, Y. L., Chen, Y. H., Fraumeni, J. F., Liu, J., Yamaji, T., Yang, Y., Hicks, B., Wyatt, K., Li, S. A., Dai, J., Ma, H., Jin, G., Song, B., Wang, Z., Cheng, S., Li, X., Ren, Y., Cui, P., Iwasaki, M., Shimazu, T., Tsugane, S., Zhu, J., Jiang, G., Fei, K., Wu, G., Chien, L. H., Chen, H. L., Su, Y. C., Tsai, F. Y., Chen, Y. S., Yu, J., Stevens, V. L., Laird-Offringa, I. A., Marconett, C. N., Lin, D., Chen, K., Wu, Y. L., Landi, M. T., Shen, H., Rothman, N., Kohno, T., Chanock, S. J. & Lan, Q., 2017, In : Human Molecular Genetics. 26, 2, p. 454-465 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Cepip: Context-dependent epigenomic weighting for prioritization of regulatory variants and disease-associated genes

Li, M. J., Li, M., Liu, Z., Yan, B., Pan, Z., Huang, D., Liang, Q., Ying, D., Xu, F., Yao, H., Wang, P., Kocher, J-P., Xia, Z., Sham, P. C., Liu, J. S. & Wang, J., Mar 16 2017, In : Genome Biology. 18, 1, 52.

Research output: Contribution to journalArticle

15 Scopus citations

Corrigendum: Linnorm: improved statistical analysis for single cell RNA-seq expression data

Yip, S. H., Wang, P., Kocher, J. P. A., Sham, P. C. & Wang, J., Dec 15 2017, In : Nucleic acids research. 45, 22, 1 p.

Research output: Contribution to journalComment/debate

Open Access
1 Scopus citations

Evolution of Drug-resistant Acinetobacter baumannii after DCD Renal Transplantation

Jiang, H., Cao, L., Qu, L., Qu, T., Liu, G., Wang, R., Li, B., Wang, Y., Ying, C., Chen, M., Lu, Y., Feng, S., Xiao, Y., Wang, J., Wu, J. & Chen, J., Dec 1 2017, In : Scientific Reports. 7, 1, 1968.

Research output: Contribution to journalArticle

2 Scopus citations

Exploring genetic associations with ceRNA regulation in the human genome

Li, M. J., Zhang, J., Liang, Q., Xuan, C., Wu, J., Jiang, P., Li, W., Zhu, Y., Wang, P., Fernandez, D., Shen, Y., Chen, Y., Kocher, J-P., Yu, Y., Sham, P. C., Wang, J., Liu, J. S. & Liu, X. S., 2017, In : Nucleic Acids Research. 45, 10, p. 5653-5665 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

Integration of fluorescence imaging with proteomics enables visualization and identification of metallo-proteomes in living cells

Lai, Y. T., Yang, Y., Hu, L., Cheng, T., Chang, Y. Y., Koohi-Moghadam, M., Wang, Y., Xia, J., Wang, J., Li, H. & Sun, H., Jan 1 2017, In : Metallomics. 9, 1, p. 38-47 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Integrative approach for the analysis of the proteome-wide response to bismuth drugs in: Helicobacter pylori

Wang, Y., Hu, L., Xu, F., Quan, Q., Lai, Y. T., Xia, W., Yang, Y., Chang, Y. Y., Yang, X., Chai, Z., Wang, J., Chu, I. K., Li, H. & Sun, H., 2017, In : Chemical Science. 8, 6, p. 4626-4633 8 p.

Research output: Contribution to journalArticle

25 Scopus citations

Linnorm: improved statistical analysis for single cell RNA-seq expression data

Yip, S. H., Wang, P., Kocher, J-P., Sham, P. C. & Wang, J., Dec 15 2017, In : Nucleic Acids Research. 45, 22, p. e179

Research output: Contribution to journalArticle

16 Scopus citations

Long noncoding RNA LINC00305 promotes inflammation by activating the AHRR-NF-k B pathway in human monocytes

Zhang, D. D., Wang, W. T., Xiong, J., Xie, X. M., Cui, S. S., Zhao, Z. G., Li, M. J., Zhang, Z. Q., Hao, D. L., Zhao, X., Li, Y. J., Wang, J., Chen, H. Z., Lv, X. & Liu, D. P., Apr 10 2017, In : Scientific Reports. 7, 46204.

Research output: Contribution to journalArticle

24 Scopus citations

MTCTScan: A comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers

Li, M. J., Yao, H., Huang, D., Liu, H., Liu, Z., Xu, H., Qin, Y., Prinz, J., Xia, W., Wang, P., Yan, B., Tran, N., Kocher, J-P., Sham, P. C. & Wang, J., Jul 3 2017, In : Nucleic Acids Research. 45, W1, p. W215-W221

Research output: Contribution to journalArticle

2 Scopus citations

NFATc2 enhances tumor-initiating phenotypes through the NFATc2/SOX2/ALDH axis in lung adenocarcinoma

Xiao, Z. J., Liu, J., Wang, S. Q., Zhu, Y., Gao, X. Y., Tin, V. P. C., Qin, J., Wang, J. & Wong, M. P., Jul 24 2017, In : eLife. 6, e26733.

Research output: Contribution to journalArticle

9 Scopus citations

Robust and rapid algorithms facilitate large-scale whole genome sequencing downstream analysis in an integrative framework

Li, M., Li, J., Li, M. J., Pan, Z., Hsu, J. S., Liu, D. J., Zhan, X., Wang, J., Youqiang, S. & Sham, P. C., May 19 2017, In : Nucleic Acids Research. 45, 9, e75.

Research output: Contribution to journalArticle

11 Scopus citations

Tacrolimus dose requirement based on the CYP3A5 genotype in renal transplant patients

Qu, L., Lu, Y., Ying, M., Li, B., Weng, C., Xie, Z., Liang, L., Lin, C., Yang, X., Feng, S., Wang, Y., Shen, X., Zhou, Q., Chen, Y., Chen, Z., Wu, J., Lin, W., Shen, Y., Qin, J., Xu, H. & 5 others, Xu, F., Wang, J., Chen, J., Jiang, H. & Huang, H., Jan 1 2017, In : Oncotarget. 8, 46, p. 81285-81294 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq

Sun, Z. D., Nair, A., Chen, X., Prodduturi, N., Wang, J. & Kocher, J-P., Dec 1 2017, In : Scientific Reports. 7, 1, 14196.

Research output: Contribution to journalArticle

10 Scopus citations

Whole-genome analysis of an extensive drug-resistant acinetobacter baumannii ST195 isolate from a recipient after DCD renal transplantation in China

Jiang, H., Cao, L., Shen, Q., Qu, L., Jiang, Y., Qu, T., Zhang, J., Lu, Y., Li, B., Zhu, C., Liu, G., Wang, R., Chen, M., Wang, Y., Wang, Y., Feng, S., Wang, J., Yu, Y., Wu, J. & Chen, J., Jan 1 2017, In : Kidney and Blood Pressure Research. 42, 6, p. 1247-1257 11 p.

Research output: Contribution to journalArticle

1 Scopus citations
2016

Analysis of heritability and shared heritability based on genome-wide association studies for thirteen cancer types

Sampson, J. N., Wheeler, W. A., Yeager, M., Panagiotou, O., Wang, Z., Berndt, S. I., Lan, Q., Abnet, C. C., Amundadottir, L. T., Figueroa, J. D., Landi, M. T., Mirabello, L., Savage, S. A., Taylor, P. R., De Vivo, I., McGlynn, K. A., Purdue, M. P., Rajaraman, P., Adami, H. O., Ahlbom, A. & 388 others, Albanes, D., Amary, M. F., An, S. J., Andersson, U., Andriole, G., Andrulis, I. L., Angelucci, E., Ansell, S. M., Arici, C., Armstrong, B. K., Arslan, A. A., Austin, M. A., Baris, D., Barkauskas, D. A., Bassig, B. A., Becker, N., Benavente, Y., Benhamou, S., Berg, C., Van Den Berg, D., Bernstein, L., Bertrand, K. A., Birmann, B. M., Black, A., Shanafelt, T. D., Boffetta, P., Boutron-Ruault, M. C., Bracci, P. M., Brinton, L., Brooks-Wilson, A. R., Bueno-De-Mesquita, H. B., Burdett, L., Buring, J., Butler, M. A., Cai, Q., Cancel-Tassin, G., Canzian, F., Carrato, A., Carreon, T., Carta, A., Chan, J. K. C., Chang, E. T., Chang, G. C., Chang, I. S., Chang, J., Chang-Claude, J., Chen, C. J., Chen, C. Y., Chen, C., Chen, C. H., Chen, C., Chen, H., Chen, K., Chen, K. Y., Chen, K. C., Chen, Y., Chen, Y. H., Chen, Y. S., Chen, Y. M., Chien, L. H., Chirlaque, M. D., Choi, J. E., Choi, Y. Y., Chow, W. H., Chung, C. C., Clavel, J., Clavel-Chapelon, F., Cocco, P., Colt, J. S., Comperat, E., Conde, L., Connors, J. M., Conti, D., Cortessis, V. K., Cotterchio, M., Cozen, W., Crouch, S., Crous-Bou, M., Cussenot, O., Davis, F. G., Ding, T., Diver, W. R., Dorronsoro, M., Dossus, L., Duell, E. J., Ennas, M. G., Erickson, R. L., Feychting, M., Flanagan, A. M., Foretova, L., Fraumeni, J. F., Freedman, N. D., Freeman, L. E. B., Fuchs, C., Gago-Dominguez, M., Gallinger, S., Gao, Y. T., Gapstur, S. M., Garcia-Closas, M., García-Closas, R., Gascoyne, R. D., Gastier-Foster, J., Gaudet, M. M., Gaziano, J. M., Giffen, C., Giles, G. G., Giovannucci, E., Glimelius, B., Goggins, M., Gokgoz, N., Goldstein, A. M., Gorlick, R., Gross, M., Grubb, R., Gu, J., Guan, P., Gunter, M., Guo, H., Habermann, T. M., Haiman, C. A., Halai, D., Hallmans, G., Hassan, M., Hattinger, C., He, Q., He, X., Helzlsouer, K., Henderson, B., Henriksson, R., Hjalgrim, H., Hoffman-Bolton, J., Hohensee, C., Holford, T. R., Holly, E. A., Hong, Y. C., Hoover, R. N., Horn-Ross, P. L., Hosain, G. M. M., Hosgood, H. D., Hsiao, C. F., Hu, N., Hu, W., Hu, Z., Huang, M. S., Huerta, J. M., Hung, J. Y., Hutchinson, A., Inskip, P. D., Jackson, R. D., Jacobs, E. J., Jenab, M., Jeon, H. S., Ji, B. T., Jin, G., Jin, L., Johansen, C., Johnson, A., Jung, Y. J., Kaaks, R., Kamineni, A., Kane, E., Kang, C. H., Karagas, M. R., Kelly, R. S., Khaw, K. T., Kim, C., Kim, H. N., Kim, J. H., Kim, J. S., Kim, Y. H., Kim, Y. T., Kim, Y. C., Kitahara, C. M., Klein, A. P., Klein, R. J., Kogevinas, M., Kohno, T., Kolonel, L. N., Kooperberg, C., Kricker, A., Krogh, V., Kunitoh, H., Kurtz, R. C., Kweon, S. S., La Croix, A., Lawrence, C., Lecanda, F., Lee, V. H. F., Li, D., Li, H., Li, J., Li, Y. J., Li, Y., Liao, L. M., Liebow, M., Lightfoot, T., Lim, W. Y., Lin, C. C., Lin, D., Lindstrom, S., Linet, M. S., Link, B. K., Liu, C., Liu, J., Liu, L., Ljungberg, B., Lloreta, J., Di Lollo, S., Lu, D., Lund, E., Malats, N., Mannisto, S., Marchand, L. L., Marina, N., Masala, G., Mastrangelo, G., Matsuo, K., Maynadie, M., McKay, J., McKean-Cowdin, R., Melbye, M., Melin, B. S., Michaud, D. S., Mitsudomi, T., Monnereau, A., Montalvan, R., Moore, L. E., Mortensen, L. M., Nieters, A., North, K. E., Novak, A. J., Oberg, A. L., Offit, K., Oh, I. J., Olson, S. H., Palli, D., Pao, W., Park, I. K., Park, J. Y., Park, K. H., Patiño-Garcia, A., Pavanello, S., Peeters, P. H. M., Perng, R. P., Peters, U., Petersen, G. M., Picci, P., Pike, M. C., Porru, S., Prescott, J., Prokunina-Olsson, L., Qian, B., Qiao, Y. L., Rais, M., Riboli, E., Riby, J., Risch, H. A., Rizzato, C., Rodabough, R., Roman, E., Roupret, M., Ruder, A. M., De Sanjose, S., Scelo, G., Schned, A., Schumacher, F., Schwartz, K., Schwenn, M., Scotlandi, K., Seow, A., Serra, C., Serra, M., Sesso, H. D., Setiawan, V. W., Severi, G., Severson, R. K., Shanafelt, T. D., Shen, H., Shen, W., Shin, M. H., Shiraishi, K., Shu, X. O., Siddiq, A., Sierrasesúmaga, L., Sihoe, A. D. L., Skibola, C. F., Smith, A., Smith, M. T., Southey, M. C., Spinelli, J. J., Staines, A., Stampfer, M., Stern, M. C., Stevens, V. L., Stolzenberg-Solomon, R. S., Su, J., Su, W. C., Sund, M., Sung, J. S., Sung, S. W., Tan, W., Tang, W., Tardón, A., Thomas, D., Thompson, C. A., Tinker, L. F., Tirabosco, R., Tjønneland, A., Travis, R. C., Trichopoulos, D., Tsai, F. Y., Tsai, Y. H., Tucker, M., Turner, J., Vajdic, C. M., Vermeulen, R. C. H., Villano, D. J., Vineis, P., Virtamo, J., Visvanathan, K., Wactawski-Wende, J., Wang, C., Wang, C. L., Wang, J. C., Wang, J., Wei, F., Weiderpass, E., Weiner, G. J., Weinstein, S., Wentzensen, N., White, E., Witzig, T. E., Wolpin, B. M., Wong, M. P., Wu, C., Wu, G., Wu, J., Wu, T., Wu, W., Wu, X., Wu, Y. L., Wunder, J. S., Xiang, Y. B., Xu, J., Xu, P., Yang, P. C., Yang, T. Y., Ye, Y., Yin, Z., Yokota, J., Yoon, H. I., Yu, C. J., Yu, H., Yu, K., Yuan, J. M., Zelenetz, A., Zeleniuch-Jacquotte, A., Zhang, X. C., Zhang, Y., Zhao, X., Zhao, Z., Zheng, H., Zheng, T., Zheng, W., Zhou, B., Zhu, M., Zucca, M., Boca, S. M., Cerhan, J. R., Ferri, G. M., Hartge, P., Hsiung, C. A., Magnani, C., Miligi, L., Morton, L. M., Smedby, K. E., Teras, L. R., Vijai, J., Wang, S. S., Brennan, P., Caporaso, N. E., Hunter, D. J., Kraft, P., Rothman, N., Silverman, D. T., Slager, S. L., Chanock, S. J. & Chatterjee, N., 2016, In : Journal of the National Cancer Institute. 107, 12, djv279.

Research output: Contribution to journalArticle

70 Scopus citations

Applications of integrative OMICs approaches to gene regulation studies

Qin, J., Yan, B., Hu, Y., Wang, P. & Wang, J., Dec 1 2016, In : Quantitative Biology. 4, 4, p. 283-301 19 p.

Research output: Contribution to journalReview article

1 Scopus citations

Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

Bildsoe, H., Fan, X., Wilkie, E. E., Ashoti, A., Jones, V. J., Power, M., Qin, J., Wang, J., Tam, P. P. L. & Loebel, D. A. F., Dec 1 2016, In : Data in Brief. 9, p. 372-375 4 p.

Research output: Contribution to journalArticle

Five endometrial cancer risk loci identified through genome-wide association analysis

Cheng, T. H. T., Thompson, D. J., O'Mara, T. A., Painter, J. N., Glubb, D. M., Flach, S., Lewis, A., French, J. D., Freeman-Mills, L., Church, D., Gorman, M., Martin, L., Hodgson, S., MWebb, P., Attia, J., Holliday, E. G., McEvoy, M., Scott, R. J., KHenders, A., Martin, N. G. & 67 others, Montgomery, G. W., Nyholt, D. R., Ahmed, S., Healey, C. S., Shah, M., Dennis, J., Fasching, P. A., Beckmann, M. W., Hein, A., Ekici, A. B., Hall, P., Czene, K., Darabi, H., Li, J., Dörk, T., Dürst, M., Hillemanns, P., Runnebaum, I., Amant, F., Schrauwen, S., Zhao, H., Lambrechts, D., Depreeuw, J., Dowdy, S. C., Goode, E. L., Fridley, B. L., Winham, S. J., NjØlstad, T. S., Salvesen, H. B., Trovik, J., Werner, H. M. J., Ashton, K., Otton, G., Proietto, T., Liu, T., Mints, M., Tham, E., Li, M. J., Yip, S. H., Wang, J., KBolla, M., Michailidou, K., Wang, Q., Tyrer, J. P., Dunlop, M., Houlston, R., Palles, C., Hopper, J. L., Peto, J., Swerdlow, A. J., Burwinkel, B., Brenner, H., Meindl, A., Brauch, H., Lindblom, A., Chang-Claude, J., Couch, F. J., Giles, G. G., Kristensen, V. N., Cox, A., MCunningham, J., Pharoah, P. D. P., Dunning, A. M., Edwards, S. L., Easton, D. F., Tomlinson, I. & Spurdle, A. B., Jun 1 2016, In : Nature Genetics. 48, 6, p. 667-674 8 p.

Research output: Contribution to journalArticle

33 Scopus citations

Functional networks of aging markers in the glomeruli of IgA nephropathy: A new therapeutic opportunity

Jiang, H., Liang, L., Qin, J., Lu, Y., Li, B., Wang, Y., Lin, C., Zhou, Q., Feng, S., Yip, S. H., Xu, F., Lai, E. Y., Wang, J. & Chen, J., Jun 7 2016, In : Oncotarget. 7, 23, p. 33616-33626 11 p.

Research output: Contribution to journalArticle

7 Scopus citations

GWASdb v2: An update database for human genetic variants identified by genome-wide association studies

Li, M. J., Liu, Z., Wang, P., Wong, M. P., Nelson, M. R., Kocher, J-P., Yeager, M., Sham, P. C., Chanock, S. J., Xia, Z. & Wang, J., 2016, In : Nucleic Acids Research. 44, D1, p. D869-D876

Research output: Contribution to journalArticle

69 Scopus citations

Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women

Wang, Z., Seow, W. J., Shiraishi, K., Hsiung, C. A., Matsuo, K., Liu, J., Chen, K., Yamji, T., Yang, Y., Chang, I. S., Wu, C., Hong, Y. C., Burdett, L., Wyatt, K., Chung, C. C., Li, S. A., Yeager, M., Hutchinson, A., Hu, W., Caporaso, N. & 130 others, Landi, M. T., Chatterjee, N., Song, M., Fraumeni, J. F., Kohno, T., Yokota, J., Kunitoh, H., Ashikawa, K., Momozawa, Y., Daigo, Y., Mitsudomi, T., Yatabe, Y., Hida, T., Hu, Z., Dai, J., Ma, H., Jin, G., Song, B., Wang, Z., Cheng, S., Yin, Z., Li, X., Ren, Y., Guan, P., Chang, J., Tan, W., Chen, C. J., Chang, G. C., Tsai, Y. H., Su, W. C., Chen, K. Y., Huang, M. S., Chen, Y. M., Zheng, H., Li, H., Cui, P., Guo, H., Xu, P., Liu, L., Iwasaki, M., Shimazu, T., Tsugane, S., Zhu, J., Jiang, G., Fei, K., Park, J. Y., Kim, Y. H., Sung, J. S., Park, K. H., Kim, Y. T., Jung, Y. J., Kang, C. H., Park, I. K., Kim, H. N., Jeon, H. S., Choi, J. E., Choi, Y. Y., Kim, J. H., Oh, I. J., Kim, Y. C., Sung, S. W., Kim, J. S., Yoon, H. I., Kweon, S. S., Shin, M. H., Seow, A., Chen, Y., Lim, W. Y., Liu, J., Wong, M. P., Lee, V. H. F., Bassig, B. A., Tucker, M., Berndt, S. I., Chow, W. H., Ji, B. T., Wang, J., Xu, J., Sihoe, A. D. L., Ho, J. C. M., Chan, J. K. C., Wang, J. C., Lu, D., Zhao, X., Zhao, Z., Wu, J., Chen, H., Jin, L., Wei, F., Wu, G., An, S. J., Zhang, X. C., Su, J., Wu, Y. L., Gao, Y. T., Xiang, Y. B., He, X., Li, J., Zheng, W., Shu, X. O., Cai, Q., Klein, R., Pao, W., Lawrence, C., Hosgood, H. D., Hsiao, C. F., Chien, L. H., Chen, Y. H., Chen, C. H., Wang, W. C., Chen, C. Y., Wang, C. L., Yu, C. J., Chen, H. L., Su, Y. C., Tsai, F. Y., Chen, Y. S., Li, Y. J., Yang, T. Y., Lin, C. C., Yang, P. C., Wu, T., Lin, D., Zhou, B., Yu, J., Shen, H., Kubo, M., Chanock, S. J., Rothman, N. & Lan, Q., Feb 1 2016, In : Human Molecular Genetics. 25, 3, p. 620-629 10 p., ddv494.

Research output: Contribution to journalArticle

22 Scopus citations

Predicting regulatory variants with composite statistic

Li, M. J., Pan, Z., Liu, Z., Wu, J., Wang, P., Zhu, Y., Xu, F., Xia, Z., Sham, P. C., Kocher, J-P., Li, M., Liu, J. S. & Wang, J., Sep 15 2016, In : Bioinformatics. 32, 18, p. 2729-2736 8 p.

Research output: Contribution to journalArticle

19 Scopus citations

Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance

Bildsoe, H., Fan, X., Wilkie, E. E., Ashoti, A., Jones, V. J., Power, M., Qin, J., Wang, J., Tam, P. P. L. & Loebel, D. A. F., Oct 1 2016, In : Developmental Biology. 418, 1, p. 189-203 15 p.

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8 Scopus citations
2015

Advanced computational approaches for medical genetics and genomics

Wei, Z., Chang, X. & Wang, J., 2015, In : BioMed Research International. 2015, 705469.

Research output: Contribution to journalEditorial

Bayesian detection of embryonic gene expression onset in C. elegans

Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In : Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

Research output: Contribution to journalArticle

3 Scopus citations

Bio-coordination of bismuth in Helicobacter pylori revealed by immobilized metal affinity chromatography

Wang, Y., Tsang, C. N., Xu, F., Kong, P. W., Hu, L., Wang, J., Chu, I. K., Li, H. & Sun, H., 2015, In : Chemical Communications. 51, 92, p. 16479-16482 4 p.

Research output: Contribution to journalArticle

16 Scopus citations

ChIP-Array 2: Integrating multiple omics data to construct gene regulatory networks

Wang, P., Qin, J., Qin, Y., Zhu, Y., Wang, L. Y., Li, M. J., Zhang, M. Q. & Wang, J., 2015, In : Nucleic Acids Research. 43, W1, p. W264-W269

Research output: Contribution to journalArticle

11 Scopus citations

Chronic Cardiovascular Disease-Associated Gene Network Analysis in Human Umbilical Vein Endothelial Cells Exposed to 2,3,7,8-Tetrachlorodibenzo-p-dioxin

Yu, Y., Qin, J., Chen, D., Wang, H., Wang, J. & Yu, Y., Jan 1 2015, In : Cardiovascular toxicology. 15, 2, p. 157-171 15 p.

Research output: Contribution to journalArticle

6 Scopus citations

Common colorectal cancer risk alleles contribute to the multiple colorectal adenoma phenotype, but do not influence colonic polyposis in FAP

Cheng, T. H. T., Gorman, M., Martin, L., Barclay, E., Casey, G., Newcomb, P. A., Conti, D. V., Schumacher, F., Gallinger, S., Lindor, N. M., Hopper, J., Jenkins, M., Hunter, D. J., Kraft, P., Jacobs, K. B., Cox, D. G., Yeager, M., Hankinson, S. E., Wacholder, S., Wang, Z. & 148 others, Welch, R., Hutchinson, A., Wang, J., Yu, K., Chatterjee, N., Orr, N., Willett, W. C., Colditz, G. A., Ziegler, R. G., Berg, C. D., Buys, S. S., McCarty, C. A., Feigelson, H. S., Calle, E. E., Thun, M. J., Hayes, R. B., Tucker, M., Gerhard, D. S., Fraumeni, J. F., Hoover, R. N., Thomas, G., Chanock, S. J., Ciampa, J., Gonzalez-Bosquet, J., Berndt, S., Amundadottir, L., Diver, W. R., Albanes, D., Virtamo, J., Weinstein, S., Schumacher, F. R., Cancel-Tassin, G., Cussenot, O., Valeri, A., Andriole, G. L., Crawford, E. D., Haiman, C. A., Henderson, B., Kolonel, L., Marchand, L. L., Siddiq, A., Riboli, E., Key, T. J., Kaaks, R., Isaacs, W., Isaacs, S., Wiley, K. E., Gronberg, H., Wiklund, F., Stattin, P., Xu, J., Zheng, S. L., Sun, J., Vatten, L. J., Hveem, K., Kumle, M., Purdue, M. P., Johansson, M., Zelenika, D., Toro, J. R., Scelo, G., Moore, L. E., Prokhortchouk, E., Wu, X., Kiemeney, L. A., Gaborieau, V., Chow, W. H., Zaridze, D., Matveev, V., Lubinski, J., Trubicka, J., Szeszenia-Dabrowska, N., Lissowska, J., Rudnai, P., Fabianova, E., Bucur, A., Bencko, V., Foretova, L., Janout, V., Boffetta, P., Colt, J. S., Davis, F. G., Schwartz, K. L., Banks, R. E., Selby, P. J., Harnden, P., Hsing, A. W., Grubb, R. L., Boeing, H., Vineis, P., Clavel-Chapelon, F., Palli, D., Tumino, R., Krogh, V., Panico, S., Duell, E. J., Quirós, J. R., Sanchez, M. J., Navarro, C., Ardanaz, E., Dorronsoro, M., Khaw, K. T., Allen, N. E., Bueno-de-Mesquita, H. B., Peeters, P. H. M., Trichopoulos, D., Linseisen, J., Ljungberg, B., Overvad, K., Tjønneland, A., Romieu, I., Mukeria, A., Shangina, O., Stevens, V. L., Gapstur, S. M., Pharoah, P. D., Easton, D. F., Weinstein, S. J., Njølstad, I., Tell, G. S., Stoltenberg, C., Kumar, R., Koppova, K., Benhamou, S., Oosterwijk, E., Vermeulen, S. H., Aben, K. K. H., Van Der Marel, S. L., Ye, Y., Wood, C. G., Pu, X., Mazur, A. M., Boulygina, E. S., Chekanov, N. N., Foglio, M., Lechner, D., Gut, I., Heath, S., Blanche, H., Skryabin, K. G., McKay, J. D., Rothman, N., Lathrop, M., Brennan, P., Saunders, B., Thomas, H., Clark, S. & Tomlinson, I., Feb 20 2015, In : European Journal of Human Genetics. 23, 2, p. 260-263 4 p.

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9 Scopus citations

Current trend of annotating single nucleotide variation in humans - A case study on SNVrap

Li, M. J. & Wang, J., Jun 1 2015, In : Methods. 79, p. 32-40 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Genetic variants associated with longer telomere length are associated with increased lung cancer risk among never-smoking women in Asia: A report from the female lung cancer consortium in Asia

Machiela, M. J., Hsiung, C. A., Shu, X. O., Seow, W. J., Wang, Z., Matsuo, K., Hong, Y. C., Seow, A., Wu, C., Hosgood, H. D., Chen, K., Wang, J. C., Wen, W., Cawthon, R., Chatterjee, N., Hu, W., Caporaso, N. E., Park, J. Y., Chen, C. J., Kim, Y. H. & 112 others, Kim, Y. T., Landi, M. T., Shen, H., Lawrence, C., Burdett, L., Yeager, M., Chang, I. S., Mitsudomi, T., Kim, H. N., Chang, G. C., Bassig, B. A., Tucker, M., Wei, F., Yin, Z., An, S. J., Qian, B., Lee, V. H. F., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Kim, J. H., Gao, Y. T., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Hutchinson, A., Wang, W. C., Klein, R. J., Chung, C. C., Oh, I. J., Chen, K. Y., Berndt, S. I., Wu, W., Chang, J., Zhang, X. C., Huang, M. S., Zheng, H., Wang, J., Zhao, X., Li, Y., Choi, J. E., Su, W. C., Park, K. H., Sung, S. W., Chen, Y. M., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Pao, W., Kim, Y. C., Yang, T. Y., Xu, J., Guan, P., Tan, W., Su, J., Wang, C. L., Li, H., Sihoe, A. D. L., Zhao, Z., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Kohno, T., Kweon, S. S., Chen, C. Y., Vermeulen, R. C. H., Wu, J., Lim, W. Y., Chen, K. C., Chow, W. H., Ji, B. T., Chan, J. K. C., Chu, M., Li, Y. J., Yokota, J., Li, J., Chen, H., Xiang, Y. B., Yu, C. J., Kunitoh, H., Wu, G., Jin, L., Lo, Y. L., Shiraishi, K., Chen, Y. H., Lin, H. C., Wu, T., Wong, M. P., Wu, Y. L., Yang, P. C., Zhou, B., Shin, M. H., Fraumeni, J. F., Zheng, W., Lin, D., Chanock, S. J., Rothman, N. & Lan, Q., Jul 15 2015, In : International Journal of Cancer. 137, 2, p. 311-319 9 p.

Research output: Contribution to journalArticle

51 Scopus citations

Human ocular epithelial cells endogenously expressing SOX2 and OCT4 yield high efficiency of pluripotency reprogramming

Poon, M. W., He, J., Fang, X., Zhang, Z., Wang, W., Wang, J., Qiu, F., Tse, H. F., Li, W., Liu, Z. & Lian, Q., Jul 1 2015, In : PLoS One. 10, 7, e0131288.

Research output: Contribution to journalArticle

8 Scopus citations