Physiology & Biomedical Engineering

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2020

Accelerated osteocyte senescence and skeletal fragility in mice with type 2 diabetes

Eckhardt, B. A., Rowsey, J. L., Thicke, B. S., Fraser, D. G., O'Grady, K. L., Bondar, O. P., Hines, J. M., Singh, R. J., Thoreson, A. R., Rakshit, K., Lagnado, A. B., Passos, J. F., Vella, A., Matveyenko, A. V., Khosla, S., Monroe, D. G. & Farr, J. N., May 7 2020, In : JCI Insight. 5, 9

Research output: Contribution to journalArticle

Open Access

Aging reduces succinate dehydrogenase activity in rat type IIx/IIb diaphragm muscle fibers

Fogarty, M. J., Marin Mathieu, N., Mantilla, C. B. & Sieck, G. C., Jan 1 2020, In : Journal of applied physiology (Bethesda, Md. : 1985). 128, 1, p. 70-77 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Automated Segmentation of Thyroid Nodule, Gland, and Cystic Components from Ultrasound Images Using Deep Learning

Kumar, V., Webb, J., Gregory, A., Meixner, D. D., Knudsen, J. M., Callstrom, M., Fatemi, M. & Alizad, A., Jan 1 2020, In : IEEE Access. 8, p. 63482-63496 15 p., 9044381.

Research output: Contribution to journalArticle

Open Access

C-Elastography: In Vitro Feasibility Phantom Study

Shahraki, D. P., Kumar, V., Ghavami, S., Urban, M. W., Alizad, A., Guzina, B. B. & Fatemi, M., Jan 1 2020, (Accepted/In press) In : Ultrasound in Medicine and Biology.

Research output: Contribution to journalArticle

Combined spatiotemporal and frequency-dependent shear wave elastography enables detection of vulnerable carotid plaques as validated by MRI

Marlevi, D., Mulvagh, S. L., Huang, R., Kevin DeMarco, J., Ota, H., Huston, J., Winter, R., Macedo, T. A., Abdelmoneim, S. S., Larsson, M., Pellikka, P. A. & Urban, M. W., Dec 1 2020, In : Scientific reports. 10, 1, 403.

Research output: Contribution to journalArticle

Open Access

Comparing supraspinatus to acromion proximity and kinematics of the shoulder and thorax between manual wheelchair propulsion styles: A pilot study

Madansingh, S. I., Fortune, E., Morrow, M. M., Zhao, K. D. & Cloud-Biebl, B. A., Apr 2020, In : Clinical Biomechanics. 74, p. 42-50 9 p.

Research output: Contribution to journalArticle

Diaphragm muscle sarcopenia into very old age in mice

Vang, P., Vasdev, A., Zhan, W. Z., Gransee, H. M., Sieck, G. C. & Mantilla, C. B., Jan 1 2020, In : Physiological reports. 8, 1, e14305.

Research output: Contribution to journalArticle

Open Access

Dose reduction in molecular breast imaging with a new image-processing algorithm

Tao, A. T., Hruska, C. B., Conners, A. L., Hunt, K. N., Swanson, T. N., Tran, T. D., Manduca, A., Borges, L., Maidment, A. D. A., Lake, D., Johnson, M. P., Carter, R. E., Rhodes, D. J. & O'Connor, M. K., Jan 1 2020, In : American Journal of Roentgenology. 214, 1, p. 185-193 9 p.

Research output: Contribution to journalArticle

High-fat diet–induced alterations to gut microbiota and gut-derived lipoteichoic acid contributes to the development of enteric neuropathy

Nyavor, Y., Brands, C. R., May, G., Kuther, S., Nicholson, J., Tiger, K., Tesnohlidek, A., Yasuda, A., Starks, K., Litvinenko, D., Linden, D. R., Bhattarai, Y., Kashyap, P. C., Forney, L. J. & Balemba, O. B., Jan 1 2020, (Accepted/In press) In : Neurogastroenterology and Motility.

Research output: Contribution to journalArticle

Open Access

Identification of Normal Pressure Hydrocephalus by Disease-Specific Patterns of Brain Stiffness and Damping Ratio

Murphy, M. C., Cogswell, P. M., Trzasko, J. D., Manduca, A., Senjem, M. L., Meyer, F. B., Ehman, R. L. & Huston, J., Apr 1 2020, In : Investigative radiology. 55, 4, p. 200-208 9 p.

Research output: Contribution to journalArticle

Impact of imaging cross-section on visualization of thyroid microvessels using ultrasound: Pilot study

Nayak, R., Nawar, N., Webb, J., Fatemi, M. & Alizad, A., Dec 1 2020, In : Scientific reports. 10, 1, 415.

Research output: Contribution to journalArticle

Open Access

Inhibition of TrkB kinase activity impairs transdiaphragmatic pressure generation

Pareja-Cajiao, M., Gransee, H. M., Cole, N. A., Sieck, G. C. & Mantilla, C. B., Jan 1 2020, In : Journal of applied physiology. 128, 2, p. 338-344 7 p.

Research output: Contribution to journalArticle

Mitochondria-to-nucleus retrograde signaling drives formation of cytoplasmic chromatin and inflammation in senescence

Vizioli, M. G., Liu, T., Miller, K. N., Robertson, N. A., Gilroy, K., Lagnado, A. B., Perez-Garcia, A., Kiourtis, C., Dasgupta, N., Lei, X., Kruger, P. J., Nixon, C., Clark, W., Jurk, D., Bird, T. G., Passos, J. F., Berger, S. L., Dou, Z. & Adams, P. D., Mar 1 2020, In : Genes and Development. 34, 5, p. 428-445 18 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Patient specific characterization of artery and plaque material properties in peripheral artery disease

Noble, C., Carlson, K. D., Neumann, E., Dragomir-Daescu, D., Erdemir, A., Lerman, A. & Young, M., Jan 2020, In : Journal of the Mechanical Behavior of Biomedical Materials. 101, 103453.

Research output: Contribution to journalArticle

Open Access

Predictive value of comb-push ultrasound shear elastography for the differentiation of reactive and metastatic axillary lymph nodes: A preliminary investigation

Gregory, A., Denis, M., Bayat, M., Kumar, V., Kim, B. H., Webb, J., Nayak, R., Adabi, S., Meixner, D. D., Polley, E. C., Fazzio, R. T., Fatemi, M. & Alizad, A., Jan 2020, In : PloS one. 15, 1, e0226994.

Research output: Contribution to journalArticle

Open Access

Quantification of morphological features in non-contrast-enhanced ultrasound microvasculature imaging

Ghavami, S., Bayat, M., Fatemi, M. & Alizad, A., Jan 1 2020, In : IEEE Access. 8, p. 18925-18937 13 p., 8964355.

Research output: Contribution to journalArticle

Open Access

Shear wave elastography of the median nerve: A mechanical study

Schrier, V. J. M. M., Lin, J., Gregory, A., Thoreson, A. R., Alizad, A., Amadio, P. C. & Fatemi, M., Jan 1 2020, (Accepted/In press) In : Muscle and Nerve. 61, 6, p. 826-833 8 p.

Research output: Contribution to journalArticle

Study of the Effects of 3 h of Continuous Cardiopulmonary Resuscitation at 27°C on Global Oxygen Transport and Organ Blood Flow

Nilsen, J. H., Valkov, S., Mohyuddin, R., Schanche, T., Kondratiev, T. V., Naesheim, T., Sieck, G. C. & Tveita, T., Apr 16 2020, In : Frontiers in Physiology. 11, 213.

Research output: Contribution to journalArticle

Open Access

Targeted Reduction of Senescent Cell Burden Alleviates Focal Radiotherapy-Related Bone Loss

Chandra, A., Lagnado, A. B., Farr, J. N., Monroe, D. G., Park, S., Hachfeld, C., Tchkonia, T., Kirkland, J. L., Khosla, S., Passos, J. F. & Pignolo, R. J., Jan 1 2020, (Accepted/In press) In : Journal of Bone and Mineral Research.

Research output: Contribution to journalArticle

1 Scopus citations

Temporal inhibition of autophagy reveals segmental reversal of ageing with increased cancer risk

Cassidy, L. D., Young, A. R. J., Young, C. N. J., Soilleux, E. J., Fielder, E., Weigand, B. M., Lagnado, A., Brais, R., Ktistakis, N. T., Wiggins, K. A., Pyrillou, K., Clarke, M. C. H., Jurk, D., Passos, J. F. & Narita, M., Dec 1 2020, In : Nature communications. 11, 1, 307.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Therapeutic Systems and Technologies: State-of-the-Art Applications, Opportunities, and Challenges

Almekkawy, M., Zderic, V., Chen, J., Ellis, M. D., Haemmerich, D., Holmes, D. R., Linte, C. A., Panescu, D., Pearce, J. & Prakash, P., Jan 1 2020, In : IEEE Reviews in Biomedical Engineering. 13, p. 325-339 15 p., 8680036.

Research output: Contribution to journalArticle

1 Scopus citations

TNFα selectively activates the IRE1α/XBP1 endoplasmic reticulum stress pathway in human airway smooth muscle cells

Yap, J., Chen, X., Delmotte, P. & Sieck, G. C., Mar 1 2020, In : American journal of physiology. Lung cellular and molecular physiology. 318, 3, p. L483-L493

Research output: Contribution to journalArticle

Trends and advancements in shoulder biomechanics research

Morrow, M. M., Cutti, A. G. & Vidt, M. E., Jan 1 2020, (Accepted/In press) In : Journal of Electromyography and Kinesiology. 102409.

Research output: Contribution to journalArticle

Two-Point Frequency Shift Method for Shear Wave Attenuation Measurement

Kijanka, P. & Urban, M. W., Mar 1 2020, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 67, 3, p. 483-496 14 p., 8859337.

Research output: Contribution to journalArticle

Workload Differentiates Breast Surgical Procedures: NSM Associated with Higher Workload Demand than SSM

Hallbeck, M. S., Law, K. E., Lowndes, B. R., Linden, A. R., Morrow, M., Blocker, R. C., Cain, S. M., Degnim, A. C., Hieken, T. J., Jakub, J. W., Racz, J. M., Farley, D. R., Nelson, H. & Boughey, J. C., May 1 2020, In : Annals of surgical oncology. 27, 5, p. 1318-1326 9 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Y-box binding protein-1 is crucial in acquired drug resistance development in metastatic clear-cell renal cell carcinoma

D'Costa, N. M., Lowerison, M. R., Raven, P. A., Tan, Z., Roberts, M. E., Shrestha, R., Urban, M. W., Monjaras-Avila, C. U., Oo, H. Z., Hurtado-Coll, A., Chavez-Munoz, C. & So, A. I., Feb 10 2020, In : Journal of Experimental and Clinical Cancer Research. 39, 1, 33.

Research output: Contribution to journalArticle

Open Access
2019

Acoustic radiation force optical coherence elastography for evaluating mechanical properties of soft condensed matters and its biological applications

Liu, H. C., Kijanka, P. & Urban, M. W., Jan 1 2019, (Accepted/In press) In : Journal of Biophotonics. e201960134.

Research output: Contribution to journalArticle

1 Scopus citations

Acoustoelasticity Analysis of Transient Waves for Non-Invasive In Vivo Assessment of Urinary Bladder

Bayat, M., Adabi, S., Kumar, V., Gregory, A., Webb, J., Denis, M., Kim, B., Singh, A., Mynderse, L., Husmann, D., Alizad, A. & Fatemi, M., Dec 1 2019, In : Scientific reports. 9, 1, 2441.

Research output: Contribution to journalArticle

Open Access

An Ultrasound Vibro-Elastography Technique for Assessing Papilledema

Zhou, B., Chen, J. J., Kazemi, A., Sit, A. J. & Zhang, X., Aug 2019, In : Ultrasound in Medicine and Biology. 45, 8, p. 2034-2039 6 p.

Research output: Contribution to journalArticle

3 Scopus citations

A real-time color doppler marker for echocardiographic guidance of an acoustically active extracorporeal membrane oxygenation cannula

Belohlavek, M., Katayama, M., Vaitkus, V. V., Kumar, V., Fatemi, M., Grabham, J. & Sandweiss, B., Jan 1 2019, In : Journal of Ultrasound in Medicine. 38, 7, p. 1875-1885 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Assessment of pulsatile insulin secretion derived from peripheral plasma c-peptide concentrations by nonparametric stochastic deconvolution

Laurenti, M. C., Vella, A., Varghese, R. T., Andrews, J. C., Sharma, A., Kittah, N. E., Rizza, R. A., Matveyenko, A., De Nicolao, G., Cobelli, C. & Dalla Man, C., May 2019, In : American Journal of Physiology - Endocrinology and Metabolism. 316, 5, p. E687-E694

Research output: Contribution to journalArticle

Attenuation measuring ultrasound shearwave elastography as a method for evaluating pancreatic viscoelasticity

Wood, B. G., Ireson, M. E., Urban, M. W. & Nenadic, I. Z. D., Oct 18 2019, In : Biomedical Physics and Engineering Express. 5, 6, 065016.

Research output: Contribution to journalArticle

Automated Droplet-Based Microfluidic Platform for Multiplexed Analysis of Biochemical Markers in Small Volumes

Cedillo-Alcantar, D. F., Han, Y. D., Choi, J., Garcia-Cordero, J. L. & Revzin, A., Apr 16 2019, In : Analytical Chemistry. 91, 8, p. 5133-5141 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Automatic detection of calcium phosphate deposit plugs at the terminal ends of kidney tubules

Fernandez, K., Korinek, M., Camp, J., Lieske, J. & Holmes, D., Jan 1 2019, In : Healthcare Technology Letters. 6, 6, p. 271-274 4 p.

Research output: Contribution to journalArticle

Open Access

Calcium sensing receptor in developing human airway smooth muscle

Roesler, A. M., Wicher, S. A., Ravix, J., Britt, R. J., Manlove, L., Teske, J. J., Cummings, K., Thompson, M. A., Farver, C., MacFarlane, P., Pabelick, C. M. & Prakash, Y. S., Jan 1 2019, (Accepted/In press) In : Journal of Cellular Physiology.

Research output: Contribution to journalArticle

3 Scopus citations

Cardiac troponin-I phosphorylation underlies myocardial contractile dysfunction induced by hypothermia rewarming

Tveita, T., Arteaga, G. M., Han, Y. S. & Sieck, G. C., Jan 1 2019, In : American Journal of Physiology - Heart and Circulatory Physiology. 317, 4, p. H726-H731

Research output: Contribution to journalArticle

Cardiac Valve Bioreactor for Physiological Conditioning and Hydrodynamic Performance Assessment

Tefft, B. J., Choe, J. A., Young, M. D., Hennessy, R. S., Morse, D. W., Bouchard, J. A., Hedberg, H. J., Consiglio, J. F., Dragomir-Daescu, D., Simari, R. D. & Lerman, A., Mar 15 2019, In : Cardiovascular Engineering and Technology. 10, 1, p. 80-94 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Caveolin-1 scaffolding domain peptide prevents hyperoxia-induced airway remodeling in a neonatal mouse model

Vogel, E. R., Manlove, L. J., Kuipers, I., Thompson, M. A., Fang, Y. H., Freeman, M. R., Britt, R. J., Faksh, A., Yang, B., Prakash, Y. S. & Pabelick, C. M., Jul 1 2019, In : American journal of physiology. Lung cellular and molecular physiology. 317, 1, p. L99-L108

Research output: Contribution to journalArticle

CBX5/G9a/H3K9me-mediated gene repression is essential to fibroblast activation during lung fibrosis

Ligresti, G., Caporarello, N., Meridew, J. A., Jones, D. L., Tan, Q., Choi, K. M., Haak, A. J., Aravamudhan, A., Roden, A., Prakash, Y. S., Lomberk, G., Urrutia, R. A. & Tschumperlin, D. J., Jan 1 2019, In : JCI Insight. 4, 12, e127111.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Cell Intrinsic Deregulated ß-Catenin Signaling Promotes Expansion of Bone Marrow Derived Connective Tissue Type Mast Cells, Systemic Inflammation, and Colon Cancer

Saadalla, A., Lima, M. M., Tsai, F., Osman, A., Singh, M. P., Linden, D. R., Dennis, K. L., Haeryfar, S. M. M., Gurish, M. F., Gounari, F. & Khazaie, K., Dec 3 2019, In : Frontiers in immunology. 10, 2777.

Research output: Contribution to journalArticle

Open Access

Charting cellular identity during human in vitro β-cell differentiation

Veres, A., Faust, A. L., Bushnell, H. L., Engquist, E. N., Kenty, J. H. R., Harb, G., Poh, Y. C., Sintov, E., Gürtler, M., Pagliuca, F. W., Peterson, Q. & Melton, D. A., May 16 2019, In : Nature. 569, 7756, p. 368-373 6 p.

Research output: Contribution to journalArticle

35 Scopus citations

Cloning, function, and localization of human, canine, and drosophila ZIP10 (SLC39A10), a Zn2+ transporter

Landry, G. M., Furrow, E., Holmes, H. L., Hirata, T., Kato, A., Williams, P., Strohmaier, K., Gallo, C. J. R., Chang, M., Pandey, M. K., Jiang, H., Bansal, A., Franz, M. C., Montalbetti, N., Alexander, M. P., Cabrero, P., Dow, J. A. T., Degrado, T. R. & Romero, M. F., Jan 1 2019, In : American Journal of Physiology - Renal Physiology. 316, 2, p. F263-F273

Research output: Contribution to journalArticle

3 Scopus citations

Debiasing-based noise suppression for ultrafast ultrasound microvessel imaging

Huang, C., Song, P., Gong, P., Trazasko, J. D., Manduca, A. & Chen, S. D., Aug 1 2019, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 66, 8, p. 1281-1291 11 p., 8720262.

Research output: Contribution to journalArticle

6 Scopus citations

Detecting Kidney Stones Using Twinkling Artifacts: Survey of Kidney Stones with Varying Composition and Size

Wood, B. G. & Urban, M. W., Jan 1 2019, (Accepted/In press) In : Ultrasound in Medicine and Biology.

Research output: Contribution to journalArticle

1 Scopus citations

Diaphragm muscle fatigue resistance does not increase with age

Fogarty, M. J., Mantilla, C. B. & Sieck, G. C., Jan 1 2019, In : Revista Cubana de Investigaciones Biomedicas. 38, 5, e0186.

Research output: Contribution to journalArticle

Diaphragm muscle function following midcervical contusion injury in rats

Khurram, O. U., Fogarty, M. J., Rana, S., Vang, P., Sieck, G. C. & Mantilla, C. B., Jan 1 2019, In : Journal of applied physiology (Bethesda, Md. : 1985). 126, 1, p. 221-230 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Diaphragm neuromuscular transmission failure in aged rats

Fogarty, M. J., Porras, M. A. G., Mantilla, C. B. & Sieck, G. C., Jan 1 2019, In : Journal of Neurophysiology. 122, 1, p. 93-104 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Direct repression of anoctamin 1 (ANO1) gene transcription by Gli proteins

Mazzone, A., Gibbons, S. J., Eisenman, S. T., Strege, P. R., Zheng, T., D'Amato, M., Ordog, T., Fernandez-Zapico, M. E. & Farrugia, G., May 1 2019, In : FASEB Journal. 33, 5, p. 6632-6642 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Downstream vascular changes after flow-diverting device deployment in a rabbit model

Parameswaran, P. K., Dai, D., Ding, Y. H., Urban, M. W., Manlove, L., Sathish, V., Cebral, J. R., Kallmes, D. F. & Kadirvel, R., May 1 2019, In : Journal of neurointerventional surgery. 11, 5, p. 523-527 5 p.

Research output: Contribution to journalArticle