Mutation scanning of the RET protooncogene using high-resolution melting analysis

Rebecca L. Margraf, Rong Mao, W. Edward Highsmith, Leonard M. Holtegaard, Carl T. Wittwer

Research output: Contribution to journalArticle

38 Scopus citations

Abstract

Background: Single-base pair missense mutations in exons 10, 11, 13, 14, 15, and 16 of the RET protooncogene are associated with the autosomal dominant multiple endocrine neoplasia type 2 (MEN2) syndromes: MEN2A, MEN2B, and familial medullary thyroid carcinoma. The current widely used approach for RET mutation detection is sequencing of the exons. Methods: Because RET mutations are rare and the majority are heterozygous mutations, we investigated RET mutation detection by high-resolution amplicon melting analysis. This mutation scanning technique uses a saturating double-stranded nucleic acid binding dye, LCGreen®, and the high-resolution melter, HR-1™, to detect heterozygous and homozygous sequence variations. Mutant genotypes are distinguished from the wild-type genotype by an altered amplicon melting curve shape or position. Results: Samples of 26 unique RET mutations, 4 non-pathogenic polymorphisms, or the wild-type genotype were available for this study. The developed RET mutation-scanning assay differentiated RET sequence variations from the wild-type genotype by altered derivative melting curve shape or position. A blinded study of 80 samples (derived from the 35 mutant, polymorphism, or wild-type samples) demonstrated that 100% of RET sequence variations were differentiated from wild-type samples. For exons 11 and 13, the nonpathogenic polymorphisms could be distinguished from the pathogenic RET mutations. Some RET mutations could be directly genotyped by the mutation scanning assay because of unique derivative melting curve shapes. Conclusion: RET high-resolution amplicon melting analysis is a sensitive, closed-tube assay that can detect RET protooncogene sequence variations.

Original languageEnglish (US)
Pages (from-to)138-141
Number of pages4
JournalClinical chemistry
Volume52
Issue number1
DOIs
StatePublished - Jan 2006

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Biochemistry, medical

Fingerprint Dive into the research topics of 'Mutation scanning of the RET protooncogene using high-resolution melting analysis'. Together they form a unique fingerprint.

  • Cite this

    Margraf, R. L., Mao, R., Highsmith, W. E., Holtegaard, L. M., & Wittwer, C. T. (2006). Mutation scanning of the RET protooncogene using high-resolution melting analysis. Clinical chemistry, 52(1), 138-141. https://doi.org/10.1373/clinchem.2005.052951