CHEK2 genomic and proteomic analyses reveal genetic inactivation or endogenous activation across the 60 cell lines of the US National Cancer Institute

G. Zoppoli, S. Solier, W. C. Reinhold, H. Liu, J. W. Connelly, A. Monks, R. H. Shoemaker, O. D. Abaan, S. R. Davis, P. S. Meltzer, J. H. Doroshow, Y. Pommier

Research output: Contribution to journalArticle

14 Scopus citations

Abstract

CHEK2 encodes a serine/threonine kinase (Chk2) activated by ATM in response to DNA double-strand breaks. On the one hand, CHEK2 has been described as a tumor suppressor with proapoptotic, cell-cycle checkpoint and mitotic functions. On the other hand, Chk2 is also commonly activated (phosphorylated at T68) in cancers and precancerous lesions. Here, we report an extensive characterization of CHEK2 across the panel of 60 established cancer cell lines from the NCI Anticancer Screen (the NCI-60) using genomic and proteomic analyses, including exon-specific mRNA expression, DNA copy-number variation (CNV) by aCGH, exome sequencing, as well as western blot analyses for total and activated (pT68-Chk2) Chk2. We show that the high heterogeneity of Chk2 levels in cancer cells is primarily due to its inactivation (owing to low gene expression, alternative splicing, point mutations, copy-number alterations and premature truncation) or reduction of protein levels. Moreover, we observe that a significant percentage of cancer cells (12% of the NCI-60 and HeLa cells) show high endogenous Chk2 activation, which is always associated with p53 inactivation, and which is accompanied by downregulation of the Fanconi anemia and homologous recombination pathways. We also report the presence of activated Chk2 (pT68-Chk2) along with histone γ-H2AX in centrosomes.

Original languageEnglish (US)
Pages (from-to)403-418
Number of pages16
JournalOncogene
Volume31
Issue number4
DOIs
StatePublished - Jan 26 2012

Keywords

  • BRCA1
  • Centrosome
  • Chk2
  • Fanconi anemia
  • H2AX
  • p53

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics
  • Cancer Research

Fingerprint Dive into the research topics of 'CHEK2 genomic and proteomic analyses reveal genetic inactivation or endogenous activation across the 60 cell lines of the US National Cancer Institute'. Together they form a unique fingerprint.

  • Cite this

    Zoppoli, G., Solier, S., Reinhold, W. C., Liu, H., Connelly, J. W., Monks, A., Shoemaker, R. H., Abaan, O. D., Davis, S. R., Meltzer, P. S., Doroshow, J. H., & Pommier, Y. (2012). CHEK2 genomic and proteomic analyses reveal genetic inactivation or endogenous activation across the 60 cell lines of the US National Cancer Institute. Oncogene, 31(4), 403-418. https://doi.org/10.1038/onc.2011.283