• 11618 Citations
  • 54 Scopus h-Index
1988 …2019
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Research Output 1988 2019

2019

An ex vivo technique for quantifying mouse lung injury using ultrasound surface wave elastography

Zhou, B., Schaefbauer, K. J., Egan, A. M., Carmona Porquera, E. M., Limper, A. H. & Zhang, X., Jan 1 2019, (Accepted/In press) In : Journal of Biomechanics. 109468.

Research output: Contribution to journalArticle

Elasticity Imaging Techniques
Lung Injury
Surface waves
Ultrasonics
Lung
2 Citations (Scopus)

Clinical effectiveness of antifibrotic medications for idiopathic pulmonary fibrosis

Dempsey, T. M., Sangaralingham, L. R., Yao, X., Sanghavi, D., Shah, N. D. & Limper, A. H., Jan 1 2019, In : American journal of respiratory and critical care medicine. 200, 2, p. 168-174 7 p.

Research output: Contribution to journalArticle

Idiopathic Pulmonary Fibrosis
Mortality
Hospitalization
Confidence Intervals
Therapeutics
1 Citation (Scopus)

Diagnosis of fungal infections a systematic review and meta-analysis supporting American thoracic society practice guideline

Haydour, Q., Hage, C. A., Carmona Porquera, E. M., Epelbaum, O., Evans, S. E., Gabe, L. M., Knox, K. S., Kolls, J. K., Wengenack, N. L., Prokop, L. J., Limper, A. H. & Murad, M. H., Jan 1 2019, In : Annals of the American Thoracic Society. 16, 9, p. 1179-1188 10 p.

Research output: Contribution to journalReview article

Mycoses
Practice Guidelines
Meta-Analysis
Thorax
Aspergillosis
2 Citations (Scopus)

Distinct Cancer-Promoting Stromal Gene Expression Depending on Lung Function

Sandri, B. J., Masvidal, L., Murie, C., Bartish, M., Avdulov, S., Higgins, L. A., Markowski, T., Peterson, M., Bergh, J., Yang, P., Rolny, C., Limper, A. H., Griffin, T. J., Bitterman, P. B., Wendt, C. H. & Larsson, O., Aug 1 2019, In : American journal of respiratory and critical care medicine. 200, 3, p. 348-358 11 p.

Research output: Contribution to journalArticle

Gene Expression
Lung
Lung Neoplasms
Neoplasms
Sirolimus

Knowledge Gaps and Research Priorities in Immune Checkpoint Inhibitor–related Pneumonitis An Official American Thoracic Society Research Statement

Sears, C. R., Rivera, M. P., Camus, P., Gaga, M., Garon, E. B., Gould, M. K., Limper, A. H., Montgrain, P. R., Naidoo, J., Nishino, M., Patel, S. P., Peikert, T. D., Possick, J. D. & Travis, W. D., Sep 15 2019, In : American journal of respiratory and critical care medicine. 200, 6, p. E31-E43

Research output: Contribution to journalArticle

Pneumonia
Research
Research Personnel
Neoplasms

Macrophage PPAR-γ suppresses long-term lung fibrotic sequelae following acute influenza infection

Huang, S., Goplen, N. P., Zhu, B., Cheon, I. S., Son, Y., Wang, Z., Li, C., Dai, Q., Jiang, L., Xiang, M., Carmona, E. M., Vassallo, R., Limper, A. H. & Sun, J., Jan 1 2019, In : PloS one. 14, 10, e0223430.

Research output: Contribution to journalArticle

Open Access
Peroxisome Proliferator-Activated Receptors
complications (disease)
Macrophages
influenza
Human Influenza
1 Citation (Scopus)

Microbiological laboratory testing in the diagnosis of fungal infections in pulmonary and critical care practice: An official American thoracic society clinical practice guideline

on behalf of the American Thoracic Society Assembly on Pulmonary Infections and Tuberculosis, Sep 1 2019, In : American journal of respiratory and critical care medicine. 200, 5, p. 535-550 16 p.

Research output: Contribution to journalReview article

Open Access
Fungal Lung Diseases
Critical Care
Practice Guidelines
Invasive Pulmonary Aspergillosis
Thorax

Myeloid C-type lectin receptors that recognize fungal mannans interact with Pneumocystis organisms and major surface glycoprotein

Kottom, T. J., Hebrink, D. M., Monteiro, J. T., Lepenies, B., Carmona, E. M., Wuethrich, M., Santo Dias, L. D. & Limper, A. H., Nov 1 2019, In : Journal of medical microbiology. 68, 11, p. 1649-1654 6 p.

Research output: Contribution to journalArticle

Pneumocystis
C-Type Lectins
Mannans
Membrane Glycoproteins
Pneumocystis carinii
3 Citations (Scopus)

PD-1hi CD8+ resident memory T cells balance immunity and fibrotic sequelae

Wang, Z., Wang, S., Goplen, N. P., Li, C., Cheon, I. S., Dai, Q., Huang, S., Shan, J., Ma, C., Ye, Z., Xiang, M., Limper, A. H., Porquera, E. C., Kohlmeier, J. E., Kaplan, M. H., Zhang, N., Johnson, A. J., Vassallo, R. & Sun, J., Jan 1 2019, In : Science Immunology. 4, 36, eaaw1217.

Research output: Contribution to journalArticle

Immunity
T-Lymphocytes
Heterologous Immunity
Rejuvenation
Infection
5 Citations (Scopus)

PPAR-γ in macrophages limits pulmonary inflammation and promotes host recovery following respiratory viral infection

Huang, S., Zhu, B., Cheon, I. S., Goplen, N. P., Jiang, L., Zhang, R., Stokes Peebles, R., Mack, M., Kaplan, M. H., Limper, A. H. & Sun, J., May 1 2019, In : Journal of virology. 93, 9, e00030-19.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Alveolar Macrophages
Virus Diseases
Respiratory Tract Infections
Pneumonia

Preadmission Corticosteroid Therapy and the Risk of Respiratory Failure in Adults Without HIV Presenting With Pneumocystis Pneumonia

Wieruszewski, P. M., Barreto, E. F., Barreto, J. N., Yadav, H., Tosh, P. K., Mara, K. C. & Limper, A. H., Jan 1 2019, In : Journal of Intensive Care Medicine.

Research output: Contribution to journalArticle

Pneumocystis Pneumonia
Respiratory Insufficiency
Adrenal Cortex Hormones
HIV
Therapeutics
2 Citations (Scopus)

Research in Pulmonary Fibrosis Across Species: Unleashing Discovery Through Comparative Biology

for the Comparative Biology of Pulmonary Fibrosis Group, Jan 1 2019, In : American Journal of the Medical Sciences.

Research output: Contribution to journalArticle

Pulmonary Fibrosis
Research

Summary for clinicians: Microbiological laboratory testing in the diagnosis of fungal infections in pulmonary and critical care practice

Hage, C. A., Carmona, E. M., Evans, S. E., Limper, A. H., Ruminjo, J. & Thomson, C. C., Dec 1 2019, In : Annals of the American Thoracic Society. 16, 12, p. 1473-1477 5 p.

Research output: Contribution to journalArticle

Fungal Lung Diseases
Critical Care
1 Citation (Scopus)

The early proximal αβ TCR signalosome specifies thymic selection outcome through a quantitative protein interaction network

Neier, S. C., Ferrer, A., Wilton, K. M., Smith, S. E. P., Kelcher, A. M. H., Pavelko, K. D., Canfield, J. M., Davis, T. R., Stiles, R. J., Chen, Z., McCluskey, J., Burrows, S. R., Rossjohn, J., Hebrink, D. M., Carmona Porquera, E. M., Limper, A. H., Kappes, D. J., Wettstein, P. J., Johnson, A. J., Pease, L. R. & 4 others, Daniels, M. A., Neuhauser, C., Gil, D. & Schrum, A. G., Feb 15 2019, In : Science immunology. 4, 32

Research output: Contribution to journalArticle

Protein Interaction Maps
T-Cell Antigen Receptor
Proteins
T-Lymphocytes
Thymocytes
Open Access
Idiopathic Pulmonary Fibrosis
Biopsy
Lung
Therapeutics
2018
2 Citations (Scopus)

Binding of Pneumocystis carinii to the lung epithelial cell receptor HSPA5 (GRP78)

Kottom, T. J., Hebrink, D. M. & Limper, A. H., Dec 1 2018, In : Journal of Medical Microbiology. 67, 12, p. 1772-1777 6 p., 000864.

Research output: Contribution to journalArticle

Pneumocystis carinii
Pneumocystis
Epithelial Cells
Lung
Epithelium
1 Citation (Scopus)

Chronic Obstructive Pulmonary Disease Phenotype Dictates Cancer-Promoting Stromal Gene Expression Programs

Wendt, C. H., Sandri, B. J., Masvidal, L., Murie, C., Bartish, M., Avdulov, S., Higgins, L. A., Markowski, T., Peterson, M., Bergh, J., Yang, P., Rolny, C., Limper, A. H., Griffin, T. J., Bitterman, P. B. & Larsson, O., Dec 1 2018, In : Annals of the American Thoracic Society. 15, 4, p. S290-S291

Research output: Contribution to journalArticle

Chronic Obstructive Pulmonary Disease
Phenotype
Gene Expression
Neoplasms
Lung Neoplasms
2 Citations (Scopus)

Comparison of respiratory pathogen detection in upper versus lower respiratory tract samples using the BioFire FilmArray respiratory panel in the immunocompromised host

Azadeh, N., Sakata, K. K., Saeed, A., Mullon, J. J., Grys, T., Limper, A. H. & Binnicker, M. J., Jan 1 2018, In : Canadian Respiratory Journal. 2018, 2685723.

Research output: Contribution to journalArticle

Immunocompromised Host
Bronchoalveolar Lavage
Respiratory System
Multiplex Polymerase Chain Reaction
Bronchoscopy
6 Citations (Scopus)

Conservation of mannan synthesis in fungi of the Zygomycota and Ascomycota reveals a broad diagnostic target

Burnham-Marusich, A. R., Hubbard, B., Kvam, A. J., Gates-Hollingsworth, M., Green, H. R., Soukup, E., Limper, A. H. & Kozel, T. R., May 1 2018, In : mSphere. 3, 3, e00094-18.

Research output: Contribution to journalArticle

Mannans
Ascomycota
Fungi
Arthrodermataceae
Immunoassay
3 Citations (Scopus)

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement

Shen, F., Liu, S., Wang, Y., Wang, L., Wen, A., Limper, A. H. & Liu, H. D., Jul 16 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics Workshops, ICHI-W 2018. Institute of Electrical and Electronics Engineers Inc., p. 29-33 5 p. 8411677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phenotype
Idiopathic Pulmonary Fibrosis
Precision Medicine
Vocabulary
Node
4 Citations (Scopus)

Cytomegalovirus (CMV) DNA quantification in bronchoalveolar lavage fluid of immunocompromised patients with CMV pneumonia

Beam, E., Germer, J. J., Lahr, B., Yao, J. D. C., Limper, A. H., Binnicker, M. J. & Razonable, R. R., Jan 1 2018, In : Clinical Transplantation. 32, 1, e13149.

Research output: Contribution to journalArticle

Bronchoalveolar Lavage Fluid
Immunocompromised Host
Cytomegalovirus
Pneumonia
DNA
4 Citations (Scopus)

Dectin-2 Is a C-Type Lectin Receptor that Recognizes Pneumocystis and Participates in Innate Immune Responses

Kottom, T. J., Hebrink, D. M., Jenson, P. E., Marsolek, P. L., Wüthrich, M., Wang, H., Klein, B., Yamasaki, S. & Limper, A. H., Feb 1 2018, In : American Journal of Respiratory Cell and Molecular Biology. 58, 2, p. 232-240 9 p.

Research output: Contribution to journalArticle

Pneumocystis
C-Type Lectins
Innate Immunity
Pneumocystis carinii
Pneumocystis Pneumonia
11 Citations (Scopus)

Early Corticosteroids for Pneumocystis Pneumonia in Adults Without HIV Are Not Associated With Better Outcome

Wieruszewski, P. M., Barreto, J. N., Frazee, E., Daniels, C. E., Tosh, P. K., Dierkhising, R. A., Mara, K. C. & Limper, A. H., Jan 1 2018, (Accepted/In press) In : Chest.

Research output: Contribution to journalArticle

Pneumocystis Pneumonia
Adrenal Cortex Hormones
Steroids
HIV
Pneumocystis
7 Citations (Scopus)

Fatty acid synthase is required for profibrotic TGF-b signaling

Jung, M. Y., Kang, J. H., Hernandez, D. M., Yin, X., Andrianifahanana, M., Wang, Y., Gonzalez-Guerrico, A., Limper, A. H., Lupu, R. & Leof, E. B., Jul 1 2018, In : FASEB Journal. 32, 7, p. 3803-3815 13 p.

Research output: Contribution to journalArticle

Fatty Acid Synthases
Lung
Oxygenation
Pulmonary Fibrosis
Toxicity
Pneumocystis carinii
Pneumocystis Pneumonia
Acquired Immunodeficiency Syndrome
HIV
4 Citations (Scopus)

Multi-omic molecular profiling of lung cancer in COPD

Sandri, B. J., Kaplan, A., Hodgson, S. W., Peterson, M., Avdulov, S., Higgins, L. A., Markowski, T., Yang, P., Limper, A. H., Griffin, T. J., Bitterman, P., Lock, E. F. & Wendt, C. H., Jul 1 2018, In : European Respiratory Journal. 52, 1, 1702665.

Research output: Contribution to journalArticle

Chronic Obstructive Pulmonary Disease
Lung Neoplasms
Neoplasms
Joints
Proto-Oncogene Proteins c-akt
9 Citations (Scopus)

Neonatal hyperoxia promotes asthma-like features through IL-33-dependent ILC2 responses

Cheon, I. S., Son, Y. M., Jiang, L., Goplen, N. P., Kaplan, M. H., Limper, A. H., Kita, H., Paczesny, S., Prakash, Y. S., Tepper, R., Ahlfeld, S. K. & Sun, J., Jan 1 2018, (Accepted/In press) In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

Hyperoxia
Asthma
Premature Infants
Oxidative Stress
Eosinophilia
4 Citations (Scopus)

Obliterative bronchiolitis associated with rheumatoid arthritis: Analysis of a single-center case series

Lin, E., Limper, A. H. & Moua, T., Jun 22 2018, In : BMC Pulmonary Medicine. 18, 1, 105.

Research output: Contribution to journalArticle

Bronchiolitis
Rheumatoid Arthritis
Lung
Mortality
Nebulizers and Vaporizers
Pneumocystis carinii
Pneumocystis Pneumonia
Sputum
Polymerase Chain Reaction
Bronchoalveolar Lavage
2 Citations (Scopus)

The 14th International Workshops on Opportunistic Protists (IWOP 14)

Cushion, M. T., Limper, A. H., Porollo, A., Saper, V. E., Sinai, A. P. & Weiss, L. M., Jan 1 2018, (Accepted/In press) In : Journal of Eukaryotic Microbiology.

Research output: Contribution to journalArticle

Toxoplasma
Pneumocystis
Microsporidia
Education
Cryptosporidium
2017
3 Citations (Scopus)

A comprehensive (biological and computational) investigation on the role of microRNA::mRNA regulations performed in chronic obstructive pulmonary disease and lung cancer

Huang, J., Dou, D., She, J., Limper, A. H., Yang, Y. D. & Yang, P., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 1062-1067 6 p. 7822669

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pulmonary diseases
MicroRNAs
Chronic Obstructive Pulmonary Disease
Lung Neoplasms
Messenger RNA
2 Citations (Scopus)

Characterization of N-Acetylglucosamine Biosynthesis in Pneumocystis species A New Potential Target for Therapy

Kottom, T. J., Hebrink, D. M., Jenson, P. E., Ramirez-Prado, J. H. & Limper, A. H., Feb 1 2017, In : American Journal of Respiratory Cell and Molecular Biology. 56, 2, p. 213-222 10 p.

Research output: Contribution to journalArticle

Pneumocystis
Murinae
Acetylglucosamine
Uridine
Biosynthesis

Diagnosis and Treatment of Fungal Chest Infections

Carmona Porquera, E. M. & Limper, A. H., Sep 1 2017, In : Clinics in Chest Medicine. 38, 3, p. xv-xvi

Research output: Contribution to journalEditorial

Mycoses
Thorax
8 Citations (Scopus)

Differential macrophage polarization from Pneumocystis in immunocompetent and immunosuppressed hosts: Potential adjunctive therapy during pneumonia

Nandakumar, V., Hebrink, D., Jenson, P., Kottom, T. & Limper, A. H., 2017, In : Infection and Immunity. 85, 3, e00939.

Research output: Contribution to journalArticle

Pneumocystis
Pneumocystis carinii
Immunocompromised Host
Pneumonia
Macrophages
31 Citations (Scopus)

Exploring animal models that resemble idiopathic pulmonary fibrosis

Tashiro, J., Rubio, G. A., Limper, A. H., Williams, K., Elliot, S. J., Ninou, I., Aidinis, V., Tzouvelekis, A. & Glassberg, M. K., Jan 1 2017, In : Frontiers in Medicine. 4, JUL, 118.

Research output: Contribution to journalReview article

Open Access
Idiopathic Pulmonary Fibrosis
Animal Models
Fibrosis
Pulmonary Fibrosis
Bleomycin
64 Citations (Scopus)

Fungal infections in HIV/AIDS

Limper, A. H., Adenis, A., Le, T. & Harrison, T. S., 2017, (Accepted/In press) In : The Lancet Infectious Diseases.

Research output: Contribution to journalArticle

Mycoses
Acquired Immunodeficiency Syndrome
HIV
Cryptococcosis
Histoplasmosis

Itraconazole and antiretroviral therapy: strategies for empirical dosing – Author's reply

Le, T., Adenis, A., Limper, A. H. & Harrison, T., Nov 1 2017, In : The Lancet Infectious Diseases. 17, 11, p. 1123-1124 2 p.

Research output: Contribution to journalLetter

Itraconazole
Therapeutics
13 Citations (Scopus)

Low Risk of Pneumonia From Pneumocystis jirovecii Infection in Patients With Inflammatory Bowel Disease Receiving Immune Suppression

Cotter, T. G., Gathaiya, N., Catania, J., Loftus, Jr, E. V., Tremaine, W. J., Baddour, L. M., Harmsen, W. S., Zinsmeister, A. R., Sandborn, W. J., Limper, A. H. & Pardi, D. S., 2017, (Accepted/In press) In : Clinical Gastroenterology and Hepatology.

Research output: Contribution to journalArticle

Pneumocystis Infections
Pneumocystis carinii
Inflammatory Bowel Diseases
Pneumonia
Immunosuppressive Agents
14 Citations (Scopus)

Overview of Treatment Approaches for Fungal Infections

Carmona Porquera, E. M. & Limper, A. H., 2017, (Accepted/In press) In : Clinics in Chest Medicine.

Research output: Contribution to journalArticle

Echinocandins
Polyenes
Azoles
Mycoses
Antifungal Agents
2 Citations (Scopus)
Idiopathic Pulmonary Fibrosis
Pharmaceutical Preparations
Drug Design
pirfenidone
Fibroblasts
12 Citations (Scopus)

Pulmonary mucormycosis: clinical features and outcomes

Lin, E., Moua, T. & Limper, A. H., Feb 20 2017, (Accepted/In press) In : Infection. p. 1-6 6 p.

Research output: Contribution to journalArticle

Mucormycosis
Lung
Mycoses
Fever
Mucorales
6 Citations (Scopus)

Pulmonary Toxicities from Conventional Chemotherapy

Leger, P., Limper, A. H. & Maldonado, F., 2017, (Accepted/In press) In : Clinics in Chest Medicine.

Research output: Contribution to journalArticle

Drug Therapy
Lung
Precision Medicine
Health Personnel
Immunotherapy

Regional Emphysema Score Predicting Overall Survival, Quality of Life, and Pulmonary Function Recovery in Early-Stage Lung Cancer Patients

Dai, J., Liu, M., Swensen, S. J., Stoddard, S. M., Wampfler, J. A., Limper, A. H., Jiang, G. & Yang, P., May 1 2017, In : Journal of Thoracic Oncology. 12, 5, p. 824-832 9 p.

Research output: Contribution to journalArticle

Recovery of Function
Emphysema
Lung Neoplasms
Quality of Life
Lung

Response

Azadeh, N., Limper, A. H., Carmona Porquera, E. M. & Ryu, J. H., Oct 1 2017, In : Chest. 152, 4, 1 p.

Research output: Contribution to journalLetter

3 Citations (Scopus)

Safety of IV Human Mesenchymal Stem Cells in Patients With Idiopathic Pulmonary Fibrosis

Limper, A. H., May 1 2017, In : Chest. 151, 5, p. 951-952 2 p.

Research output: Contribution to journalEditorial

Idiopathic Pulmonary Fibrosis
Mesenchymal Stromal Cells
Safety
16 Citations (Scopus)

The interaction of pneumocystis with the c-Type lectin receptor mincle exerts a significant role in host defense against infection

Kottom, T. J., Hebrink, D. M., Jenson, P. E., Nandakumar, V., Wuthrich, M., Wang, H., Klein, B., Yamasaki, S., Lepenies, B. & Limper, A. H., May 1 2017, In : Journal of Immunology. 198, 9, p. 3515-3525 11 p.

Research output: Contribution to journalArticle

Pneumocystis
Mitogen Receptors
C-Type Lectins
Macrophages
Infection
9 Citations (Scopus)

The Role of Infection in Interstitial Lung Diseases: A Review

Azadeh, N., Limper, A. H., Carmona Porquera, E. M. & Ryu, J. H., Oct 1 2017, In : Chest. 152, 4, p. 842-852 11 p.

Research output: Contribution to journalReview article

Interstitial Lung Diseases
Infection
Idiopathic Pulmonary Fibrosis
Lung Diseases
Research
1 Citation (Scopus)

Weighing the risks and benefits of Pneumocystis pneumonia prophylaxis in iatrogenically immunosuppressed dermatology patients

Lehman, J., Gonzalez Santiago, T. M., Wetter, D. A., Kalaaji, A. N. & Limper, A. H., Jan 1 2017, In : International Journal of Dermatology. 56, 1, p. e5-e6

Research output: Contribution to journalLetter

7 Citations (Scopus)

When to Consider the Possibility of a Fungal Infection. An Overview of Clinical Diagnosis and Laboratory Approaches

Batzlaff, C. M. & Limper, A. H., 2017, (Accepted/In press) In : Clinics in Chest Medicine.

Research output: Contribution to journalArticle

Mycoses
Clinical Laboratory Techniques
Immunocompromised Host
Epidemiology
Differential Diagnosis
2016

Drug-induced pulmonary disorders

Maldonado, F. & Limper, A. H., Apr 19 2016, Interstitial Pulmonary and Bronchiolar Disorders. CRC Press, p. 809-822 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lung
Pharmaceutical Preparations