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Conference article
2018

Acoustic navigation of intramyocardial injection needle catheter using color doppler echocardiography

Katayama, M., Kumar, V., Zarbatany, D., Vaitkus, V., Fortuin, F. D., Fatemi, M. & Belohlavek, M., Jan 1 2018, In : IEEE International Ultrasonics Symposium, IUS. 2018-January, 8579717.

Research output: Contribution to journalConference article

Measured Fractional Calculus Parameters for Shear Waves in Swine Liver

Grosz, S. A., Pereira, R., Urban, M. W., Humphrey, T. & McGough, R. J., Jan 1 2018, In : IEEE International Ultrasonics Symposium, IUS. 2018-January, 8580193.

Research output: Contribution to journalConference article

2 Scopus citations
2017

Detection of increased vasa vasorum in artery walls: Improving CT number accuracy using image deconvolution

Rajendran, K., Leng, S., Jorgensen, S. M., Abdurakhimova, D., Ritman, E. L. & McCollough, C. H., Feb 3 2017, In : Proceedings of SPIE - The International Society for Optical Engineering. 10327, 135.

Research output: Contribution to journalConference article

EEG-GRAPH: A factor-graph-based model for capturing spatial, temporal, and observational relationships in electroencephalograms

Varatharajah, Y., Chong, M. J., Saboo, K., Berry, B., Brinkmann, B., Worrell, G. A. & Iyer, R., Jan 1 2017, In : Advances in Neural Information Processing Systems. 2017-December, p. 5372-5381 10 p.

Research output: Contribution to journalConference article

2 Scopus citations
2016

Real-time remote physiological monitoring: The role of communication in three paradigms of inpatient care

Ardoin, W. J., Hoyle, W. S., Bewaji, O., Ferris, T. K., Peres, S. C., Hallbeck, S., Kaplan, R. & Brady, P. A., Jan 1 2016, In : Proceedings of the Human Factors and Ergonomics Society. p. 618-622 5 p.

Research output: Contribution to journalConference article

2015

Neutron activation analysis with a Monte Carlo simulation for kidney stones

Sahiner, H., Srivastava, A., Liu, X. & McCollough, C. H., Jan 1 2015, In : Transactions of the American Nuclear Society. 113, p. 481-482 2 p.

Research output: Contribution to journalConference article

2014

A work domain ontology for modeling emergency department workflow

Tao, C., Okafor, N., Mehta, A., Maddow, C., Robinson, D., King, B., Zhang, J. & Franklin, A., Jan 1 2014, In : CEUR Workshop Proceedings. 1320

Research output: Contribution to journalConference article

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies

Jiang, G., Sharma, D. K., Solbrig, H. R., Tao, C., Weng, C. & Chute, C. G., Jan 1 2014, In : CEUR Workshop Proceedings. 1320

Research output: Contribution to journalConference article

Exploring the pharmacogenomics knowledge base (pharmgkb) for repositioning breast cancer drugs by leveraging Web ontology language (owl) and cheminformatics approaches

Zhu, Q., Tao, C., Shen, F. & Chute, C. G., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 172-182 11 p.

Research output: Contribution to journalConference article

18 Scopus citations

GSO: A semantic web ontology to capture 3D genome structure

Zheng, W. J., Du, J., Tang, J. & Tao, C., Jan 1 2014, In : CEUR Workshop Proceedings. 1320

Research output: Contribution to journalConference article

Implementing iterative algorithms with SPARQL

Techentin, R. W., Gilbert, B. K., Lugowski, A., Deweese, K., Gilbert, J., Dull, E., Hinchey, M. & Reinhardt, S. P., Jan 1 2014, In : CEUR Workshop Proceedings. 1133, p. 216-223 8 p.

Research output: Contribution to journalConference article

6 Scopus citations

Towards pathway curation through literature mining - A case study using PharmGKB

Ravikumar, K. E., Wagholikar, K. B. & Liu, H., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 352-363 12 p.

Research output: Contribution to journalConference article

9 Scopus citations

Ultrasound-based shear wave evaluation in transverse isotropic tissue mimicking phantoms and muscle

Aristizabal, S., Carrascal, C. A., Kinnick, R. R., Nenadic, I. Z., Greenleaf, J. F. & Urban, M. W., Jan 1 2014, In : Proceedings of Meetings on Acoustics. 20, 1, 075004.

Research output: Contribution to journalConference article

5 Scopus citations
2013

Analysis of vaccine-related networks using semantic medline and the vaccine ontology

Zhang, Y., Tao, C., He, Y., Kanjamala, P. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

An incremental approach to MEDLINE MeSH indexing

Zhu, D., Li, D., Carterette, B. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1094

Research output: Contribution to journalConference article

5 Scopus citations

A semantic web-based approach for harvesting multilingual textual definitions from wikipedia to support ICD-11 revision

Jiang, G., Solbrig, H. R. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

1 Scopus citations

Disorder concept identification from clinical notes an experience with the ShARe/CLEF 2013 challenge

Fan, J. W., Sood, N. & Huang, Y., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

5 Scopus citations

Incorporating expert terminology and disease risk factors into consumer health vocabularies

Seedor, M., Peterson, K. J., Nelsen, L. A., Cocos, C., McCormick, J. B., Chute, C. G. & Pathak, J., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 421-432 12 p.

Research output: Contribution to journalConference article

9 Scopus citations

Integrated cTAKES for concept mention detection and normalization

Liu, H., Wagholikar, K., Jonnalagadda, S. & Sohn, S., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

1 Scopus citations

Ontology-based temporal analysis for medical device adverse event- A use case study on Late Stent Thrombosis

Clark, K., Sharma, D., Qin, R., Jiang, G., Chute, C. G. & Tao, C., Jan 1 2013, In : CEUR Workshop Proceedings. 1114

Research output: Contribution to journalConference article

Standardized drug and pharmacological class network construction

Zhu, Q., Jiang, G., Wang, L. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

Three-dimensional nonlinear inverse scattering: Quantitative transmission algorithms, refraction corrected reflection, scanner design and clinical results

Wiskin, J., Borup, D., Johnson, S., Andre, M., Greenleaf, J., Parisky, Y. & Klock, J., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 075001.

Research output: Contribution to journalConference article

30 Scopus citations

Using discharge summaries to improve information retrieval in clinical domain

Zhu, D., Stephen, W., James, M., Carterette, B. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards

Jiang, G., Evans, J., Endle, C. M., Solbrig, H. R. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1114

Research output: Contribution to journalConference article

2012

Building standardized Semantic Web RESTful services to support ICD-11 revision

Jiang, G., Solbrig, H. R. & Chute, C. G., Jan 1 2012, In : CEUR Workshop Proceedings. 952

Research output: Contribution to journalConference article

1 Scopus citations

Integratingva's NDF-RT drug terminology with PharmGKB: Preliminary results

Pathak, J., Weiss, L. C., Durski, M. J., Zhu, Q., Freimuth, R. R. & Chute, C. G., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 400-409 10 p.

Research output: Contribution to journalConference article

3 Scopus citations

Requirements and strategy for the development of a pediatric drug ontology

Richesson, R., Pathak, J., McLeod, W., Blackmon, G. & Vehik, K., Dec 1 2012, In : CEUR Workshop Proceedings. 897

Research output: Contribution to journalConference article

1 Scopus citations
2011

A case study of ICD-11 anatomy value set extraction from SNOMED CT

Jiang, G., Solbrig, H. R., Chalmers, R. J. G., Spackman, K., Rector, A. L. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 133-138 6 p.

Research output: Contribution to journalConference article

4 Scopus citations

An ontological representation of adverse drug events

Jiang, G., Duke, J. D., Pathak, J. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 329-331 3 p.

Research output: Contribution to journalConference article

Empirical ontologies for cohort identification

Wu, S., Wagholikar, K., Sohn, S., Kaggal, V. & Liu, H., Dec 1 2011, In : NIST Special Publication.

Research output: Contribution to journalConference article

Toward answering time-related questions from adverse event reports using ontology-based approaches

Tao, C., Jiang, G., Clark, K., Sharma, D. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 332-334 3 p.

Research output: Contribution to journalConference article

Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

Pathak, J., Murphy, S. P., Willaert, B. N., Kremers, H. M., Chute, C. G., Yawn, B. P. & Rocca, W. A., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 266-268 3 p.

Research output: Contribution to journalConference article

2010

Acoustic images of gel dosimetry phantoms

Vieira, S. L., Baggio, A., Kinnick, R. R., Fatemi, M. & Carneiro, A. A. O., Jan 1 2010, In : Physics Procedia. 3, 1, p. 83-88 6 p.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations

Calculations of intensities for radiation force modeling with the software package FOCUS

McGough, R. & Urban, M. W., Dec 1 2010, In : Proceedings of Meetings on Acoustics. 9, 020006.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations

Evaluating gene/protein name tagging and mapping for article retrieval

Lee, C. M., Torii, M., Shah, J., Tsai, Y. T., Hu, Z. Z. & Liu, H., Dec 1 2010, In : CEUR Workshop Proceedings. 714, p. 104-109 6 p.

Research output: Contribution to journalConference article

1 Scopus citations

Mash-up of lexwiki and web-protégé for distributed authoring of large-scale biomedical terminologies

Jiang, G., Solbrig, H. R. & Chute, C. G., Dec 1 2010, In : CEUR Workshop Proceedings. 754

Research output: Contribution to journalConference article

Nonlinear ultrasound scattering by a cloud of microbubbles

Silva, G. T., Belohlavek, M., McMahon, E. M. & Fatemi, M., Jan 1 2010, In : Physics Procedia. 3, 1, p. 919-926 8 p.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations
2009

Bilateral responses of prefrontal and motor cortices to repetitive Transcranial Magnetic Stimulation as measured by functional Near Infrared Spectroscopy

Tian, F., Kozel, F. A., Dhamne, S., McClintock, S. M., Croarkin, P., Mapes, K., Husain, M. M. & Liu, H., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7161, 71613C.

Research output: Contribution to journalConference article

Epithelial cancer detection by oblique-incidence optical spectroscopy

Garcia-Uribe, A., Balareddy, K. C., Zou, J., Wang, K. K., Duvic, M. & Wang, L. V., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7169, 71690A.

Research output: Contribution to journalConference article

2 Scopus citations

LexRDF model: An RDF-based unified model for heterogeneous biomedical ontologies

Tao, C., Pathak, J., Solbrig, H. R., Wei, W. Q. & Chute, C. G., Dec 1 2009, In : CEUR Workshop Proceedings. 521

Research output: Contribution to journalConference article

2008

A 20Gb/s SerDes transmitter with adjustable source impedance and 4-tap feed-forward equalization in 65nm Bulk CMOS

Philpott, R. A., Humble, J. S., Kertis, R. A., Fritz, K. E., Gilbert, B. K. & Daniel, E. S., Dec 26 2008, In : Proceedings of the Custom Integrated Circuits Conference. p. 623-626 4 p., 4672163.

Research output: Contribution to journalConference article

21 Scopus citations

Analysis of the difference-frequency wave generated by the interaction of two axisymmetric and co-focused ultrasound beams

Silva, G. T., Mitri, F. G. & Fatemi, M., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 1326-1329 4 p., 4803614.

Research output: Contribution to journalConference article

3 Scopus citations

Comparing the effects of two semantic terminology models on classification of clinical notes: A study of heart murmur findings

Jiang, G. & Chute, C. G., Dec 1 2008, In : CEUR Workshop Proceedings. 410, p. 59-65 7 p.

Research output: Contribution to journalConference article

Quantification of liver stiffness and viscosity with SDUV: In vivo animal study

Chen, S., Urban, M. W., Greenleaf, J. F., Zheng, Y. & Yao, A., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 654-657 4 p., 4803377.

Research output: Contribution to journalConference article

13 Scopus citations

Rapid shear wav e measurement for sDUV with broadband excitation pulses and non-uniform sampling

Zheng, Y., Yao, A., Chen, S. & Greenleaf, J. F., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 217-220 4 p., 4803589.

Research output: Contribution to journalConference article

6 Scopus citations

Reverberation reduction in vibro-acoustography using channel estimation method

Zheng, Y., Yao, A., Jiangli, L., Kinnick, R., Greenleaf, J. & Fatemi, M., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 2025-2028 4 p., 4803584.

Research output: Contribution to journalConference article

2 Scopus citations

Skin viscoelasticity with surface wave method

Zhang, X., Kinnick, R. R., Pittelkow, M. R. & Greenleaf, J. F., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 651-653 3 p., 4803497.

Research output: Contribution to journalConference article

15 Scopus citations

Viscoelasticity of lung tissue with surface wave method

Zhang, X., Kinnick, R. R. & Greenleaf, J. F., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 21-23 3 p., 4803548.

Research output: Contribution to journalConference article

9 Scopus citations
2007

Classifier ensemble for biomedical document retrieval

Torii, M. & Liu, H., Dec 1 2007, In : CEUR Workshop Proceedings. 319, p. 5.1-5.17

Research output: Contribution to journalConference article

2 Scopus citations