Rochester, MN

Research Output

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Conference contribution
2016

Identifying peripheral arterial disease cases using natural language processing of clinical notes

Afzal, N., Sohn, S., Abram, S., Liu, H. D., Kullo, I. J. & Arruda-Olson, A. M., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 126-131 6 p. 7455851

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Immunopathology: Autoimmune glial diseases and differentiation from multiple sclerosis

Popescu, B. F. G. H. & Lucchinetti, C. F., 2016, Autoimmune Neurology, 2016. Elsevier, Vol. 133. p. 95-106 12 p. (Handbook of Clinical Neurology; vol. 133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Improved receiver coil arrays for real-time contrast-enhanced MR angiography of the peripheral vasculature

Riederer, S. J. & Weavers, P. T., 2016, IFMBE Proceedings. Springer Verlag, Vol. 57. p. 292-295 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Instrument to detect syncope and the onset of shock

McAdams, D. R., Kolodziejski, N. J., Stapels, C. J., Fernandez, D. E., Podolsky, M. J., Farkas, D., Christian, J. F., Joyner, M. J., Johnson, C. P. & Paradis, N. A., 2016, Dynamics and Fluctuations in Biomedical Photonics XIII. SPIE, Vol. 9707. 970706

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Intelligent fractional-order PID (FOPID) heart rate controller for cardiac pacemaker

Arunachalam, S. P., Kapa, S., Mulpuru, S., Friedman, P. A. & Tolkacheva, E. G., Dec 27 2016, 2016 IEEE Healthcare Innovation Point-of-Care Technologies Conference, HI-POCT 2016. Institute of Electrical and Electronics Engineers Inc., p. 105-108 4 p. 7797708

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Introduction to autoimmune neurology

Pittock, S. J. & Vincent, A., 2016, Autoimmune Neurology, 2016. Elsevier, Vol. 133. p. 3-14 12 p. (Handbook of Clinical Neurology; vol. 133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Kurtosis as a statistical approach to identify the pivot point of the rotor

Arunachalam, S. P., Annoni, E. M., Mulpuru, S., Friedman, P. A. & Tolkacheva, E. G., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 497-500 4 p. 7590748

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes

Liu, S., Chaudhary, V., Wang, L. & Liu, H. D., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 302 1 p. 7776360

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Linking Patient Alone Time and Provider Time to Staffing Levels and LOS at the Emergency Department: A RFID Based Study

Arunachalam, S. P., Marisamy, G., Sir, M., Nestler, D., Hellmich, T. & Pasupathy, K. S., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 102-105 4 p. 7776333

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Low-dose performance of a whole-body research photon-counting CT scanner

Yu, Z., Leng, S., Kappler, S., Hahn, K., Li, Z., Halaweish, A. F., Henning, A., Ritman, E. L. & McCollough, C. H., 2016, Medical Imaging 2016: Physics of Medical Imaging. SPIE, Vol. 9783. 97835Q

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Low-grade and anaplastic oligodendroglioma

Van Den Bent, M. J., Bromberg, J. E. C. & Buckner, J. C., 2016, Gliomas, 2016. Elsevier, Vol. 134. p. 361-380 20 p. (Handbook of Clinical Neurology; vol. 134).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Lung ultrasound surface wave elastography

Zhang, X., Meixner, D., Kinnick, R., Osborn, T., Barthalmai, B., Greenleaf, J. F. & Kalra, S., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728512

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MayoNLP at SemEval-2016 task 1: Semantic textual similarity based on lexical semantic net and deep learning semantic model

Afzal, N., Wang, Y. & Liu, H. D., Jan 1 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 674-679 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Scopus citations

Measured wave dispersion in tubes excited with acoustic radiation force matches theoretical guided wave dispersion

Urban, M. W., Astaneh, A. V., Aquino, W., Greenleaf, J. F. & Guddati, M. N., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728821

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Navigating PCB stackup layer assignments for optimized si and pi performance in high speed, high power designs

Smutzer, C. M., Degerstrom, M. J. & Gilbert, B. K., Jun 20 2016, 2016 IEEE 20th Workshop on Signal and Power Integrity, SPI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7496274

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

On developing resources for patient-level information retrieval

Wu, S., Timmons, T., Yates, A., Wang, M., Bedrick, S., Hersh, W. & Liu, H. D., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 3412-3416 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Overview of the immune system

Medina, K. L., 2016, Autoimmune Neurology, 2016. Elsevier, Vol. 133. p. 61-76 16 p. (Handbook of Clinical Neurology; vol. 133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Paraneoplastic and idiopathic autoimmune neurologic disorders: Approach to diagnosis and treatment

Pittock, S. J. & Palace, J., 2016, Autoimmune Neurology, 2016. Elsevier, Vol. 133. p. 165-183 19 p. (Handbook of Clinical Neurology; vol. 133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Performance measurements of a PET/CT system with prototype SiPM detectors

Kemp, B. J., Peterson, W. T., Uribe, J., Williams, J. J., Lowe, V. & Stearns, C. W., Oct 3 2016, 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2015. Institute of Electrical and Electronics Engineers Inc., 7582091

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Phantom analysis for characterization and comparison of PET detector sampling and reconstruction settings

Wollenweber, S. D. & Kemp, B. J., Oct 3 2016, 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2015. Institute of Electrical and Electronics Engineers Inc., 7582039

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Portable closed-loop optogenetic stimulation device

Edward, E. S., Kouzani, A. Z., Kale, R. P. & Tye, S. J., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 5250-5253 4 p. 7591911

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Predicting detection performance with model observers: Fourier domain or spatial domain?

Chen, B., Yu, L., Leng, S., Kofler, J., Favazza, C., Vrieze, T. & McCollough, C. H., 2016, Medical Imaging 2016: Physics of Medical Imaging. SPIE, Vol. 9783. 978326

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Prioritizing adverse drug reaction and drug repositioning candidates generated by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Wang, L., Prasad, R. & Liu, H. D., Oct 2 2016, ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 289-296 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Quantitative characterization of brain β-amyloid in 718 normal subjects using a joint PiB/FDG PET image histogram

Camp, J. J., Hanson, D. P., Lowe, V., Kemp, B. J., Senjem, M. L., Murray, M. E., Dickson, D. W., Parisi, J. E., Petersen, R. C., Robb, R. A. & Holmes III, D. R., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785. 97852V

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Rotor pivot point identification with intrinsic mode function complexity index using empirical mode decomposition

Arunachalam, S. P., Mulpuru, S., Friedman, P. A. & Tolkacheva, E. G., Jul 8 2016, 2016 IEEE EMBS International Student Conference: Expanding the Boundaries of Biomedical Engineering and Healthcare, ISC 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7508597

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Simultaneous estimation of shear elastic modulus and backscatter coefficient: Phantom and in human liver in vivo study

Rouyer, J., Torres, G., Amador, C., Urban, M. W. & Lavarello, R., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728874

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Staggered NLP-assisted refinement for clinical annotations of chronic disease events

Wu, S. T., Wi, C. I., Sohn, S., Liu, H. D. & Juhn, Y. J., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 426-429 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

The brain-machine interface: Nanotechniques for improving brain electrochemical monitoring and modulating

Andrews, R., Bennet, K., Chang, S-Y., Koehne, J., Lee, K. H., Marsh, M., Meyyappan, M. & Rand, E., 2016, Advanced Materials - TechConnect Briefs 2016. TechConnect, Vol. 1. p. 61-64 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tissue characterization using simultaneous estimation of backscatter coefficient and elastic shear modulus

Rouyer, J., Torres, G., Urban, M. W. & Lavarello, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 2881-2884 4 p. 7591331

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Towards real-time QRS feature extraction for wearable monitors

Smital, L., Haider, C. R., Leinveber, P., Jurak, P., Gilbert, B. K. & Holmes III, D. R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 3519-3522 4 p. 7591487

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Translational bioinformatics 101

Tenenbaum, J. D., Madhavan, S., Freimuth, R., Denny, J. C. & Frey, L., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 552-556 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasound surface wave elastography of the living human eye

Zhang, X., McLaren, J., Kazemi, A., Lin, S. C., Pruet, C. M. & Sit, A. J., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728510

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2015

A clinical decision support system for preventing adverse reactions to blood transfusion

Murphree, D. H., Clifford, L., Lin, Y., Madde, N., Ngufor, C., Upadhyaya, S., Pathak, J. & Kor, D. J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 100-104 5 p. 7349680

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A domain ontology for the Non-Coding RNA field

Huang, J., Eilbeck, K., Blake, J. A., Dou, D., Natale, D. A., Ruttenberg, A., Smith, B., Zimmermann, M. T., Jiang, G. D., Lin, Y., Wu, B., He, Y., Zhang, S., Wang, X., Zhang, H., Liu, Z. & Tan, M., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 621-624 4 p. 7359755

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Advanced image reconstruction strategies for 4D prostate DCE-MRI: Steps toward clinical practicality

Stinson, E. G., Borisch, E. A., Froemming, A. T., Kawashima, A., Young, P. M., Warndahl, B. A., Grimm, R. C., Manduca, A., Riederer, S. J. & Trazasko, J. D., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9597. 959704

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing

Li, D., Rastegar Mojarad, M., Li, Y., Sohn, S., Mehrabi, S., Komandur Elayavilli, R., Yu, Y. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1033-1034 2 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Li, D., Rastegar-Mojarad, M., Elayavilli, R. K., Wang, Y., Mehrabi, S., Yu, Y., Sohn, S., Li, Y., Afzal, N. & Liu, H. D., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 315-324 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A heterogeneous multi-task learning for predicting RBC transfusion and perioperative outcomes

Ngufor, C., Upadhyaya, S., Murphree, D., Madde, N., Kor, D. J. & Pathak, J., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9105. p. 287-297 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9105).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A high frame-rate and low-cost Elastography system by generating shear waves through continuous vibration of the ultrasound transducer

Mellema, D. C., Song, P., Manduca, A., Urban, M. W., Kinnick, R. R., Greenleaf, J. F. & Chen, S. D., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329311

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Laplacian-based SNR measure: Shear stiffness estimation in MR elastography

Eon, R. S., Huynh, K. T., Lake, D. S. & Manduca, A., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9417. 94171K

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analysis of left atrial respiratory and cardiac motion for cardiac ablation therapy

Rettmann, M. E., Holmes III, D. R., Johnson, S. B., Lehmann, H. I., Robb, R. A. & Packer, D. L., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9415. 94152L

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

An efficient ADMM-based sparse reconstruction strategy for multi-level sampled MRI

Trazasko, J. D., Borisch, E. A., Weavers, P. T., Manduca, A., Young, P. M. & Riederer, S. J., Apr 24 2015, Conference Record - Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, Vol. 2015-April. p. 411-414 4 p. 7094474

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Li, D., Prasad, R. & Liu, H. D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 669-674 6 p. 7359766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

An experimental phantom study on the effect of calcifications on ultrasound shear wave elastography

Gregory, A., Bayat, M., Denis, M., Mehrmohammadi, M., Fatemi, M. & Alizad, A., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 3843-3846 4 p. 7319232

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL

Hong, N., Jiang, G. D., Pathak, J. & Chute, C. G., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1093 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Application of sociometer badges in simulated health environments: Can wearable devices quantify individual's workload?

Yu, D., Blocker, R., Hallbeck, S., Sir, M., Hellmich, T. & Pasupathy, K. S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 538-542 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Preliminary study of novice workload and performance during surgical simulation tasks for conventional vs. single incision laparoscopic techniques

Lowndes, B., Abdelrahman, A., McCrory, B. & Hallbeck, S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 498-502 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A sequential data analysis approach to electronic health record workflow

Kaufman, D. R., Furniss, S. K., Grando, M. A., Larson, D. & Burton, M. M., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 218. p. 120-125 6 p. (Studies in Health Technology and Informatics; vol. 218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations