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• Transcription factor networks in aged naïve CD4 T cells bias lineage differentiation

  Hu, B., Li, G., Ye, Z., Gustafson, C. E., Tian, L., Weyand, C. M. & Goronzy, J. J., Aug 2019, In: Aging Cell. 18, 4, e12957.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  10 Scopus citations

• Transcription factors down-stream of Ras as molecular indicators for targeting malignancies with oncolytic herpes virus

  Esfandyari, T., Tefferi, A., Szmidt, A., Alain, T., Zwolak, P., Lasho, T., Lee, P. W. & Farassati, F., Dec 2009, In: Molecular Oncology. 3, 5-6, p. 464-468 5 p.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Transcription factors in cell biology, surgery, and transplantation

  Hedin, K. E., Kaczynski, J. A., Gibson, M. R. & Urrutia, R., Jul 2000, In: Surgery. 128, 1, p. 1-5 5 p.

  Research output: Contribution to journal › Article › peer-review
  8 Scopus citations

• Transcription Factor Sp1 Expression Is a Significant Predictor of Survival in Human Gastric Cancer

  Wang, L., Wei, D., Huang, S., Peng, Z., Le, X., Wu, T. T., Yao, J., Ajani, J. & Xie, K., Dec 15 2003, In: Clinical Cancer Research. 9, 17, p. 6371-6380 10 p.

  Research output: Contribution to journal › Article › peer-review
  280 Scopus citations

• Transcription factors RUNX1/AML1 and RUNX2/Cbfa1 dynamically associate with stationary subnuclear domains

  Harrington, K. S., Javed, A., Drissi, H., McNeil, S., Lian, J. B., Stein, J. L., van Wijnen, A. J., Wang, Y. L. & Stein, G. S., Nov 1 2002, In: Journal of cell science. 115, 21, p. 4167-4176 10 p.

  Research output: Contribution to journal › Review article › peer-review
  73 Scopus citations

• Transcription in early and late passage embryonic mouse fibroblasts in primary culture: A correlated biochemical, autoradiographical and ultrastructural study

  Evans, C. H., Van Gansen, P. & Rasson, I., Jan 1 1978, In: Biologie Cellulaire. 33, 2, p. 117-127 11 p.

  Research output: Contribution to journal › Article › peer-review
  17 Scopus citations

• Transcription of a variant human U6 small nuclear RNA gene is controlled by a novel, internal RNA polymerase III promoter

  Tichelaar, J. W., Knerer, B., Vrabel, A. & Wieben, E. D., Aug 1994, In: Molecular and cellular biology. 14, 8, p. 5450-5457 8 p.

  Research output: Contribution to journal › Article › peer-review
  4 Scopus citations

• Transcription of histone H4, H3, and H1 cell cycle genes: Promoter factor HiNF-D contains CDC2, cyclin A, and an RB-related protein

  Van Wijnen, A. J., Aziz, F., Graña, X., De Luca, A., Desai, R. K., Jaarsveld, K., Last, T. J., Soprano, K., Giordano, A., Lian, J. B., Stein, J. L. & Stein, G. S., Dec 20 1994, In: Proceedings of the National Academy of Sciences of the United States of America. 91, 26, p. 12882-12886 5 p.

  Research output: Contribution to journal › Article › peer-review
  68 Scopus citations

• Transcription of Interleukin-25 and extracellular release of the protein is regulated by allergen proteases in airway epithelial cells

  Kouzaki, H., Tojima, I., Kita, H. & Shimizu, T., Nov 2013, In: American journal of respiratory cell and molecular biology. 49, 5, p. 741-750 10 p.

  Research output: Contribution to journal › Article › peer-review
  71 Scopus citations

• Transcription of the mouse ribosomal spacer region

  Wood, K. M., Bowman, L. H. & Thompson, E. A., 1984, In: Molecular and cellular biology. 4, 5, p. 822-828 7 p.

  Research output: Contribution to journal › Article › peer-review
  11 Scopus citations

• Transcription of the promoter of the rat NF-1 gene depends on the integrity of an Sp1 recognition site

  Ammendola, R., Gounari, F., Piaggio, G., De Simone, V. & Cortese, R., Jan 1990, In: Molecular and cellular biology. 10, 1, p. 387-390 4 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription poisoning by topoisomerase i is controlled by gene length, splice sites, and miR-142-3p

  Solier, S., Ryan, M. C., Martin, S. E., Varma, S., Kohn, K. W., Liu, H., Zeeberg, B. R. & Pommier, Y., Aug 1 2013, In: Cancer research. 73, 15, p. 4830-4839 10 p.

  Research output: Contribution to journal › Article › peer-review
  35 Scopus citations

• Transcript levels in plasma contribute substantial predictive value as potential Alzheimer's disease biomarkers in African Americans

  Reddy, J. S., Jin, J., Lincoln, S. J., Ho, C. C. G., Crook, J. E., Wang, X., Malphrus, K. G., Nguyen, T., Tamvaka, N., Greig-Custo, M. T., Lucas, J. A., Graff-Radford, N. R., Ertekin-Taner, N. & Carrasquillo, M. M., Apr 2022, In: EBioMedicine. 78, 103929.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcript map of the 3.7-Mb D19S112-D19S246 candidate tumor suppressor region on the long arm of chromosome 19

  Hartmann, C., Johnk, L., Kitange, G., Wu, Y., Ashworth, L. K., Jenkins, R. B. & Louis, D. N., Jul 15 2002, In: Cancer research. 62, 14, p. 4100-4108 9 p.

  Research output: Contribution to journal › Article › peer-review
  57 Scopus citations

• Transcriptome analysis of garlic-induced hepatoprotection against alcoholic fatty liver

  Raghu, R., Liu, C. T., Tsai, M. H., Tang, X., Kalari, K. R., Subramanian, S. & Sheen, L. Y., Nov 7 2012, In: Journal of Agricultural and Food Chemistry. 60, 44, p. 11104-11119 16 p.

  Research output: Contribution to journal › Article › peer-review
  24 Scopus citations

• Transcriptome analysis of pancreatic cancer reveals a tumor suppressor function for HNF1A

  Hoskins, J. W., Jia, J., Flandez, M., Parikh, H., Xiao, W., Collins, I., Emmanuel, M. A., Ibrahim, A., Powell, J., Zhang, L., Malats, N., Bamlet, W. R., Petersen, G. M., Real, F. X. & Amundadottir, L. T., Dec 1 2014, In: Carcinogenesis. 35, 12, p. 2670-2678 9 p.

  Research output: Contribution to journal › Article › peer-review
  34 Scopus citations

• Transcriptome analysis reveals manifold mechanisms of cyst development in ADPKD

  De Almeida, R. M. C., Clendenon, S. G., Richards, W. G., Boedigheimer, M., Damore, M., Rossetti, S., Harris, P. C., Herbert, B. S., Xu, W. M., Wandinger-Ness, A., Ward, H. H., Glazier, J. A. & Bacallao, R. L., Nov 21 2016, In: Human Genomics. 10, 1, p. 1-24 24 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Transcriptome and epigenome landscape of human cortical development modeled in organoids

  Amiri, A., Coppola, G., Scuderi, S., Wu, F., Roychowdhury, T., Liu, F., Pochareddy, S., Shin, Y., Safi, A., Song, L., Zhu, Y., Sousa, A. M. M., Gerstein, M., Crawford, G. E., Sestan, N., Abyzov, A. & Vaccarino, F. M., Dec 14 2018, In: Science. 362, 6420, 1268.

  Research output: Contribution to journal › Article › peer-review
  87 Scopus citations

• Transcriptome changes affecting Hedgehog and cytokine signalling in the umbilical cord: Implications for disease risk

  The GUSTO study group, Jul 10 2012, In: PloS one. 7, 7, e39744.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  11 Scopus citations

• Transcriptome from circulating cells suggests dysregulated pathways associated with long-term recurrent events following first-time myocardial infarction

  Suresh, R., Li, X., Chiriac, A., Goel, K., Terzic, A., Perez-Terzic, C. & Nelson, T. J., Sep 2014, In: Journal of Molecular and Cellular Cardiology. 74, p. 13-21 9 p.

  Research output: Contribution to journal › Article › peer-review
  39 Scopus citations

• Transcriptome Profiling of Acquired Gefitinib Resistant Lung Cancer Cells Reveals Dramatically Changed Transcription Programs and New Treatment Targets

  Wei, N., Song, Y., Zhang, F., Sun, Z. & Zhang, X., Aug 14 2020, In: Frontiers in Oncology. 10, 1424.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome Profiling Using Next-Generation Sequencing

  Asmann, Y. W., Wallace, M. B. & Thompson, E. A., Nov 2008, In: Gastroenterology. 135, 5, p. 1466-1468 3 p.

  Research output: Contribution to journal › Article › peer-review
  32 Scopus citations

• Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites

  Sabarinathan, R., Wenzel, A., Novotny, P., Tang, X., Kalari, K. R. & Gorodkin, J., Jan 8 2014, In: PloS one. 9, 1, e82699.

  Research output: Contribution to journal › Article › peer-review
  25 Scopus citations

• Transcriptome-wide association study identifies new candidate susceptibility genes for glioma

  Atkins, I., Kinnersley, B., Ostrom, Q. T., Labreche, K., Il'yasova, D., Armstrong, G. N., Eckel-Passow, J. E., Schoemaker, M. J., Nothen, M. M., Barnholtz-Sloan, J. S., Swerdlow, A. J., Simon, M., Rajaraman, P., Chanock, S. J., Shildkraut, J., Bernstein, J. L., Hoffmann, P., Jockel, K. H., Lai, R. K., Claus, E. B., & 8 othersOlson, S. H., Johansen, C., Wrensch, M. R., Melin, B., Jenkins, R. B., Sanson, M., Bondy, M. L. & Houlston, R. S., Apr 15 2019, In: Cancer research. 79, 8, p. 2065-2071 7 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Transcriptome-wide association study of breast cancer risk by estrogen-receptor status

  ABCTB Investigators, HEBON Investigators, BCFR Investigators, OCGN Investigators, GEMO Study Collaborators, EMBRACE Collaborators & GC-HBOC Study Collaborators, Jul 1 2020, In: Genetic epidemiology. 44, 5, p. 442-468 27 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  4 Scopus citations

• Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection

  Cho, H. K., Masters, T., Greenwood-Quaintance, K. E., Johnson, S., Jeraldo, P. R., Chia, N., Pu, M., Abdel, M. P. & Patel, R., Nov 2021, In: MicrobiologyOpen. 10, 6, e1256.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic Analysis Reveals the Messenger RNAs Responsible for the Progression of Alcoholic Cirrhosis

  Yang, Z., Han, S., Zhang, T., Kusumanchi, P., Huda, N., Tyler, K., Chandler, K., Skill, N. J., Tu, W., Shan, M., Jiang, Y., Maiers, J. L., Perez, K., Ma, J. & Liangpunsakul, S., Jun 2022, In: Hepatology Communications. 6, 6, p. 1361-1372 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic Analysis Reveals the MicroRNAs Responsible for Liver Regeneration Associated With Mortality in Alcohol-Associated Hepatitis

  Yang, Z., Zhang, T., Kusumanchi, P., Tang, Q., Sun, Z., Radaeva, S., Peiffer, B., Shah, V. H., Kamath, P., Gores, G. J., Sanyal, A., Chalasani, N., Jiang, Y., Huda, N., Ma, J. & Liangpunsakul, S., Nov 2021, In: Hepatology. 74, 5, p. 2436-2451 16 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic analysis to identify genes associated with selective hippocampal vulnerability in Alzheimer’s disease

  Crist, A. M., Hinkle, K. M., Wang, X., Moloney, C. M., Matchett, B. J., Labuzan, S. A., Frankenhauser, I., Azu, N. O., Liesinger, A. M., Lesser, E. R., Serie, D. J., Quicksall, Z. S., Patel, T. A., Carnwath, T. P., DeTure, M., Tang, X., Petersen, R. C., Duara, R., Graff-Radford, N. R., Allen, M., & 8 othersCarrasquillo, M. M., Li, H., Ross, O. A., Ertekin-Taner, N., Dickson, D. W., Asmann, Y. W., Carter, R. E. & Murray, M. E., Dec 1 2021, In: Nature communications. 12, 1, 2311.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic and Immunohistochemical Profiling of SLC6A14 in Pancreatic Ductal Adenocarcinoma

  Penheiter, A. R., Erdogan, S., Murphy, S. J., Hart, S. N., Felipe Lima, J., Rakhshan Rohakhtar, F., O'Brien, D. R., Bamlet, W. R., Wuertz, R. E., Smyrk, T. C., Couch, F. J., Vasmatzis, G., Bender, C. E. & Carlson, S. K., 2015, In: BioMed Research International. 2015, 593572.

  Research output: Contribution to journal › Article › peer-review
  17 Scopus citations

• Transcriptomic and Immunophenotypic Characterization of Tumor Immune Microenvironment in Squamous Cell Carcinoma of the Oral Tongue

  Chatzopoulos, K., Sotiriou, S., Collins, A. R., Kartsidis, P., Schmitt, A. C., Chen, X., Khazaie, K., Hinni, M. L., Ramsower, C. A., Zarka, M. A., Patel, S. H. & Garcia, J. J., Jun 2021, In: Head and Neck Pathology. 15, 2, p. 509-522 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic and Proteomic Analysis of Steatohepatitic Hepatocellular Carcinoma Reveals Novel Distinct Biologic Features

  van Treeck, B. J., Mounajjed, T., Moreira, R. K., Orujov, M., Allende, D. S., Bellizzi, A. M., Lagana, S. M., Davila, J. I., Jessen, E. & Graham, R. P., Jan 1 2021, In: American journal of clinical pathology. 155, 1, p. 87-96 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic and proteomic profiling of KEAP1 disrupted and sulforaphane-treated human breast epithelial cells reveals common expression profiles

  Agyeman, A. S., Chaerkady, R., Shaw, P. G., Davidson, N. E., Visvanathan, K., Pandey, A. & Kensler, T. W., Feb 2012, In: Breast Cancer Research and Treatment. 132, 1, p. 175-187 13 p.

  Research output: Contribution to journal › Article › peer-review
  127 Scopus citations

• Transcriptomic characterization of endometrioid, clear cell, and high-grade serous epithelial ovarian carcinoma

  Fridley, B. L., Dai, J., Raghavan, R., Li, Q., Winham, S. J., Hou, X., Weroha, S. J., Wang, C., Kalli, K. R., Cunningham, J. M., Lawrenson, K., Gayther, S. A. & Goode, E. L., Sep 2018, In: Cancer Epidemiology Biomarkers and Prevention. 27, 9, p. 1101-1109 9 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Transcriptomic heterogeneity of androgen receptor activity defines a de novo low AR-active subclass in treatment Naïve primary prostate cancer

  Spratt, D. E., Alshalalfa, M., Fishbane, N., Weiner, A. B., Mehra, R., Mahal, B. A., Lehrer, J., Liu, Y., Zhao, S. G., Speers, C., Morgan, T. M., Dicker, A. P., Freedland, S. J., Jeffery Karnes, R., Weinmann, S., Davicioni, E., Ross, A. E., Den, R. B., Nguyen, P. L., Feng, F. Y., & 3 othersLotan, T. L., Chinnaiyan, A. M. & Schaeffer, E. M., Nov 15 2019, In: Clinical Cancer Research. 25, 22, p. 6721-6730 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic Heterogeneity of Gleason Grade Group 5 Prostate Cancer[Formula presented]

  Kishan, A. U., Romero, T., Alshalalfa, M., Liu, Y., Tran, P. T., Nickols, N. G., Ye, H., Sajed, D., Rettig, M. B., Reiter, R. E., Garraway, I. P., Spratt, D. E., Freedland, S. J., Zhao, X., Li, Z., Deek, M., Livingstone, J., Mahal, B. A., Nguyen, P. L., Feng, F. Y., & 11 othersDen, R. B., Schaeffer, E. M., Lotan, T. L., Karnes, R. J., Klein, E. A., Ross, A. E., Grogan, T., Davicioni, E., Elashoff, D., Boutros, P. C. & Weidhaas, J. B., Sep 2020, In: European urology. 78, 3, p. 327-332 6 p.

  Research output: Contribution to journal › Article › peer-review
  4 Scopus citations

• Transcriptomic Profiles of Confirmed Pediatric Tuberculosis Patients and Household Contacts Identifies Active Tuberculosis, Infection, and Treatment Response among Indian Children

  Tornheim, J. A., Madugundu, A. K., Paradkar, M., Fukutani, K. F., Queiroz, A. T. L., Gupte, N., Gupte, A. N., Kinikar, A., Kulkarni, V., Balasubramanian, U., Sreenivasamurthy, S., Raja, R., Pradhan, N., Shivakumar, S. V. B. Y., Valvi, C., Hanna, L. E., Andrade, B. B., Mave, V., Pandey, A. & Gupta, A., Apr 27 2020, In: Journal of Infectious Diseases. 221, 10, p. 1647-1658 12 p.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Transcriptomic profiles of high and low antibody responders to smallpox vaccine

  Kennedy, R. B., Oberg, A. L., Ovsyannikova, I. G., Haralambieva, I. H., Grill, D. & Poland, G. A., Jul 2013, In: Genes and Immunity. 14, 5, p. 277-285 9 p.

  Research output: Contribution to journal › Article › peer-review
  20 Scopus citations

• Transcriptomic profiling of medial temporal lobe epilepsy

  Venugopal, A. K., Sameer Kumar, G. S., Mahadevan, A., Selvan, L. D. N., Marimuthu, A., Dikshit, J. B., Tata, P., Ramachandra, Y. L., Chaerkady, R., Sinha, S., Chandramouli, B. A., Arivazhagan, A., Satishchandra, P., Shankar, S. K. & Pandey, A., 2012, In: Journal of Proteomics and Bioinformatics. 5, 2, p. 31-39 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  15 Scopus citations

• Transcriptomic Regulation of Muscle Mitochondria and Calcium Signaling by Insulin/IGF-1 Receptors Depends on FoxO Transcription Factors

  Bhardwaj, G., Penniman, C. M., Klaus, K., Weatherford, E. T., Pan, H., Dreyfuss, J. M., Nair, K. S., Kahn, C. R. & O’Neill, B. T., Feb 4 2022, In: Frontiers in Physiology. 12, 779121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic signatures of cellular and humoral immune responses in older adults after seasonal influenza vaccination identified by data-driven clustering

  Voigt, E. A., Grill, D. E., Zimmermann, M. T., Simon, W. L., Ovsyannikova, I. G., Kennedy, R. B. & Poland, G. A., Dec 1 2018, In: Scientific reports. 8, 1, 739.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis

  Grover, M., Gibbons, S. J., Nair, A. A., Bernard, C. E., Zubair, A. S., Eisenman, S. T., Wilson, L. A., Miriel, L., Pasricha, P. J., Parkman, H. P., Sarosiek, I., McCallum, R. W., Koch, K. L., Abell, T. L., Snape, W. J., Kuo, B., Shulman, R. J., McKenzie, T. J., Kellogg, T. A., Kendrick, M. L., & 3 othersTonascia, J., Hamilton, F. A. & Farrugia, G., Aug 7 2018, In: BMC medical genomics. 11, 1, 62.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  14 Scopus citations

• Transcutaneous aortic valve implantation

  Lloyd, M. A. & Rihal, C. S., Jan 1 2013, Cardiac Valvular Medicine. Springer-Verlag London Ltd, p. 103-110 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  1 Scopus citations

• Transcutaneous electrical nerve stimulation

  Walsh, D. M. & Basford, J. R., 2009, Current Therapy in Pain. Elsevier Inc., p. 541-546 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  3 Scopus citations

• Transcutaneous oxygen tension in patients with calciphylaxis

  Wilmer, W. A., Voroshilova, O., Singh, I., Middendorf, D. F. & Cosio, F. G., 2001, In: American Journal of Kidney Diseases. 37, 4, p. 797-806 10 p.

  Research output: Contribution to journal › Article › peer-review
  39 Scopus citations

• Transcutaneous partial pressure of oxygen after surgical wounds

  McPhail, I. R., Cooper, L. T., Hodge, D. O., Cabanela, M. E. & Rooke, T. W., 2004, In: Vascular Medicine. 9, 2, p. 125-127 3 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Transcutaneous ultrasound measurements of carotid flow to monitor for cerebral malperfusion during type-a aortic dissection repair

  Pulido, J. N., Pallohusky, B. S., Park, S. J. & Cook, D. J., Aug 1 2013, In: Journal of Cardiothoracic and Vascular Anesthesia. 27, 4, p. 728-730 3 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• Transdermal clonidine for ameliorating post-orchiectomy hot flashes

  Loprinzi, C. L., Goldberg, R. M., O'Fallon, J. R., Quella, S. K., Miser, A. W., Mynderse, L. A., Brown, L. D., Tschetter, L. K., Wilwerding, M. B., Dose, A. M. & Oesterling, J. E., 1994, In: Journal of Urology. 151, 3, p. 634-636 3 p.

  Research output: Contribution to journal › Article › peer-review
  82 Scopus citations

• Transdermal clonidine for ameliorating tamoxifen-induced hot flashes

  Goldberg, R. M., Loprinzi, C. L., O'Fallon, J. R., Veeder, M. H., Miser, A. W., Mailliard, J. A., Michalak, J. C., Dose, A. M., Rowland, K. M. & Burnham, N. L., Jan 1994, In: Journal of Clinical Oncology. 12, 1, p. 155-158 4 p.

  Research output: Contribution to journal › Article › peer-review
  257 Scopus citations

• Transdermal fentanyl in the management of cancer pain in ambulatory patients: An open-label pilot study

  Hammack, J. E., Mailliard, J. A., Loprinzi, C. L., Respond, R. M., O'Fallon, J. R., Wilwerding, M. B., Reuter, N. F., Michalak, J. C., Fidler, P. & Miser, A. W., Oct 1996, In: Journal of pain and symptom management. 12, 4, p. 234-240 7 p.

  Research output: Contribution to journal › Article › peer-review
  31 Scopus citations