Health Sciences Research

Research Output

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Conference article
2016

Real-time remote physiological monitoring: The role of communication in three paradigms of inpatient care

Ardoin, W. J., Hoyle, W. S., Bewaji, O., Ferris, T. K., Peres, S. C., Hallbeck, S., Kaplan, R. & Brady, P. A., Jan 1 2016, In : Proceedings of the Human Factors and Ergonomics Society. p. 618-622 5 p.

Research output: Contribution to journalConference article

2014

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies

Jiang, G., Sharma, D. K., Solbrig, H. R., Tao, C., Weng, C. & Chute, C. G., Jan 1 2014, In : CEUR Workshop Proceedings. 1320

Research output: Contribution to journalConference article

Towards pathway curation through literature mining - A case study using PharmGKB

Ravikumar, K. E., Wagholikar, K. B. & Liu, H., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 352-363 12 p.

Research output: Contribution to journalConference article

9 Scopus citations
2013

Analysis of vaccine-related networks using semantic medline and the vaccine ontology

Zhang, Y., Tao, C., He, Y., Kanjamala, P. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

An incremental approach to MEDLINE MeSH indexing

Zhu, D., Li, D., Carterette, B. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1094

Research output: Contribution to journalConference article

5 Scopus citations

A semantic web-based approach for harvesting multilingual textual definitions from wikipedia to support ICD-11 revision

Jiang, G., Solbrig, H. R. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

1 Scopus citations

Disorder concept identification from clinical notes an experience with the ShARe/CLEF 2013 challenge

Fan, J. W., Sood, N. & Huang, Y., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

5 Scopus citations

Incorporating expert terminology and disease risk factors into consumer health vocabularies

Seedor, M., Peterson, K. J., Nelsen, L. A., Cocos, C., McCormick, J. B., Chute, C. G. & Pathak, J., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 421-432 12 p.

Research output: Contribution to journalConference article

9 Scopus citations

Integrated cTAKES for concept mention detection and normalization

Liu, H., Wagholikar, K., Jonnalagadda, S. & Sohn, S., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

1 Scopus citations

Ontology-based temporal analysis for medical device adverse event- A use case study on Late Stent Thrombosis

Clark, K., Sharma, D., Qin, R., Jiang, G., Chute, C. G. & Tao, C., Jan 1 2013, In : CEUR Workshop Proceedings. 1114

Research output: Contribution to journalConference article

Standardized drug and pharmacological class network construction

Zhu, Q., Jiang, G., Wang, L. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1061

Research output: Contribution to journalConference article

Using discharge summaries to improve information retrieval in clinical domain

Zhu, D., Stephen, W., James, M., Carterette, B. & Liu, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards

Jiang, G., Evans, J., Endle, C. M., Solbrig, H. R. & Chute, C. G., Jan 1 2013, In : CEUR Workshop Proceedings. 1114

Research output: Contribution to journalConference article

2012

Building standardized Semantic Web RESTful services to support ICD-11 revision

Jiang, G., Solbrig, H. R. & Chute, C. G., Jan 1 2012, In : CEUR Workshop Proceedings. 952

Research output: Contribution to journalConference article

1 Scopus citations

Integratingva's NDF-RT drug terminology with PharmGKB: Preliminary results

Pathak, J., Weiss, L. C., Durski, M. J., Zhu, Q., Freimuth, R. R. & Chute, C. G., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 400-409 10 p.

Research output: Contribution to journalConference article

3 Scopus citations

Requirements and strategy for the development of a pediatric drug ontology

Richesson, R., Pathak, J., McLeod, W., Blackmon, G. & Vehik, K., Dec 1 2012, In : CEUR Workshop Proceedings. 897

Research output: Contribution to journalConference article

1 Scopus citations
2011

A case study of ICD-11 anatomy value set extraction from SNOMED CT

Jiang, G., Solbrig, H. R., Chalmers, R. J. G., Spackman, K., Rector, A. L. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 133-138 6 p.

Research output: Contribution to journalConference article

4 Scopus citations

An ontological representation of adverse drug events

Jiang, G., Duke, J. D., Pathak, J. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 329-331 3 p.

Research output: Contribution to journalConference article

Empirical ontologies for cohort identification

Wu, S., Wagholikar, K., Sohn, S., Kaggal, V. & Liu, H., Dec 1 2011, In : NIST Special Publication.

Research output: Contribution to journalConference article

Toward answering time-related questions from adverse event reports using ontology-based approaches

Tao, C., Jiang, G., Clark, K., Sharma, D. & Chute, C. G., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 332-334 3 p.

Research output: Contribution to journalConference article

Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

Pathak, J., Murphy, S. P., Willaert, B. N., Kremers, H. M., Chute, C. G., Yawn, B. P. & Rocca, W. A., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 266-268 3 p.

Research output: Contribution to journalConference article

2010

Evaluating gene/protein name tagging and mapping for article retrieval

Lee, C. M., Torii, M., Shah, J., Tsai, Y. T., Hu, Z. Z. & Liu, H., Dec 1 2010, In : CEUR Workshop Proceedings. 714, p. 104-109 6 p.

Research output: Contribution to journalConference article

1 Scopus citations

Mash-up of lexwiki and web-protégé for distributed authoring of large-scale biomedical terminologies

Jiang, G., Solbrig, H. R. & Chute, C. G., Dec 1 2010, In : CEUR Workshop Proceedings. 754

Research output: Contribution to journalConference article

2009

LexRDF model: An RDF-based unified model for heterogeneous biomedical ontologies

Tao, C., Pathak, J., Solbrig, H. R., Wei, W. Q. & Chute, C. G., Dec 1 2009, In : CEUR Workshop Proceedings. 521

Research output: Contribution to journalConference article

2008

Comparing the effects of two semantic terminology models on classification of clinical notes: A study of heart murmur findings

Jiang, G. & Chute, C. G., Dec 1 2008, In : CEUR Workshop Proceedings. 410, p. 59-65 7 p.

Research output: Contribution to journalConference article

2007

Classifier ensemble for biomedical document retrieval

Torii, M. & Liu, H., Dec 1 2007, In : CEUR Workshop Proceedings. 319, p. 5.1-5.17

Research output: Contribution to journalConference article

2 Scopus citations

Exploring traits of adjectives to predict polarity opinion in BLOGS and semantic filters in Genomics

Ruiz, M. E., Sun, Y., Wang, J. & Liu, H., Dec 1 2007, In : NIST Special Publication.

Research output: Contribution to journalConference article

2005

A practical approach to significance assessment in alignment with gaps

Chia, N. & Bundschuh, R., Oct 17 2005, In : Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500, p. 474-488 15 p.

Research output: Contribution to journalConference article

2 Scopus citations

Fusion of knowledge-intensive and statistical approaches for retrieving and annotating textual genomics documents

Aronson, A. R., Demner-Fushman, D., Humphrey, S. M., Lin, J., Liu, H., Ruch, P., Ruiz, M. E., Smith, L. H., Tanabe, L. K. & John Wilbur, W., Dec 1 2005, In : NIST Special Publication.

Research output: Contribution to journalConference article

1 Scopus citations

Information integration and knowledge acquisition from semantically heterogeneous biological data sources

Caragea, D., Pathak, J., Bao, J., Silvescu, A., Andorf, C., Dobbs, D. & Honavar, V., Oct 17 2005, In : Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3615, p. 175-190 16 p.

Research output: Contribution to journalConference article

16 Scopus citations

Informative-frame filtering in endoscopy videos

An, Y. H., Hwang, S., Oh, J. H., Lee, J. K., Tavanapong, W., De Groen, P. C. & Wong, J., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5747, I, p. 291-302 12 p., 32.

Research output: Contribution to journalConference article

3 Scopus citations

Ontology-extended component-based workflows: A framework for constructing complex workflows from semantically heterogeneous software components

Pathak, J., Caragea, D. & Honavar, V. G., Sep 9 2005, In : Lecture Notes in Computer Science. 3372, p. 41-56 16 p.

Research output: Contribution to journalConference article

6 Scopus citations

Residents can be trained to detect abdominal aortic aneurysms using personal ultrasound imagers: A pilot study

Riegert-Johnson, D. L., Bruce, C. J., Montori, V. M., Cook, R. J. & Spittell, P. C., May 1 2005, In : Journal of the American Society of Echocardiography. 18, 5, p. 394-397 4 p.

Research output: Contribution to journalConference article

9 Scopus citations
2004

A system for the analysis of whole-bone strength from helical CT images

Camp, J. J., Karwoski, R. A., Stacy, M. C., Atkinson, E. J., Khosla, S., Melton, L. J., Riggs, B. L. & Robb, R. A., Jul 5 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5369, p. 74-88 15 p.

Research output: Contribution to journalConference article

27 Scopus citations

Blurry frame detection and shot segmentation in colonoscopy videos

Oh, J., Hwang, S., Tavanapong, W., De Groen, P. C. & Wong, J., Dec 1 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5307, p. 531-542 12 p.

Research output: Contribution to journalConference article

12 Scopus citations

Identifying and tracking turbulence structures

Storlie, C., Davis, C., Hoar, T., Lee, T., Nychka, D., Weiss, J. B. & Whitcher, B., Dec 1 2004, In : Conference Record - Asilomar Conference on Signals, Systems and Computers. 2, p. 1700-1704 5 p.

Research output: Contribution to journalConference article

3 Scopus citations
2002

Adaptable multiple neural networks using evolutionary computation

Sohn, S. & Dagli, C. H., Jan 1 2002, In : Proceedings of SPIE - The International Society for Optical Engineering. 4739, p. 141-149 9 p.

Research output: Contribution to journalConference article

2 Scopus citations
2001

Do handle design and hand posture affect pointing accuracy?

Hägg, G. M. & Hallbeck, M. S., Dec 1 2001, In : Proceedings of the Human Factors and Ergonomics Society. p. 731-735 5 p.

Research output: Contribution to journalConference article

1 Scopus citations

Self-organizing map with fuzzy class memberships

Sohn, S. & Dagli, C. H., Jan 1 2001, In : Proceedings of SPIE - The International Society for Optical Engineering. 4390, p. 150-157 8 p.

Research output: Contribution to journalConference article

2 Scopus citations

Soft counting networks for bone marrow differentials

Keller, J. M., Gader, P. D., Sohn, S. & Caldwell, C. W., Dec 1 2001, In : Proceedings of the IEEE International Conference on Systems, Man and Cybernetics. 5, p. 3425-3428 4 p.

Research output: Contribution to journalConference article

5 Scopus citations
2000

Investigation of the effects of mammographic acquisition parameters on a semiautomated quantitative measure of breast cancer risk

Hangiandreou, N. J., Mount, C. J., Brandt, K. R., Quam, J. P., Manduca, A., Vachon, C. M. & Sellers, T. A., May 1 2000, In : Journal of Digital Imaging. 13, 2 SUPPL. 1, p. 186-188 3 p.

Research output: Contribution to journalConference article

2 Scopus citations
1999

Generalized shuffle-exchange digraphs: Hamiltonian properties

Liu, H., Hsu, D. F. & Horiguchi, S., Jan 1 1999, In : Proceedings - IEEE International Symposium on Circuits and Systems. 6, p. VI-157-VI-160

Research output: Contribution to journalConference article

1 Scopus citations
1989

Effects of synergistic wrist motion on flexor tendon excursion in the hand

Lin, G. T., An, K. N., Amadio, P. C., Cooney, W. P., Linscheid, R. L. & Chao, E. Y. S., Jan 1 1989, In : Journal of Biomechanics. 22, 10, 1 p.

Research output: Contribution to journalConference article

2 Scopus citations