Health Sciences Research

Research Output 1979 2020

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Conference contribution
2017
3 Citations (Scopus)

Identifying serendipitous drug usages in patient forum data a feasibility study

Ru, B., Warner-Hillard, C., Ge, Y. & Yao, L., Jan 1 2017, HEALTHINF 2017 - 10th International Conference on Health Informatics, Proceedings; Part of 10th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2017. Gamboa, H., Fred, A., van den Broek, E. L. & Vaz, M. (eds.). SciTePress, Vol. 5. p. 106-118 13 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adaptive boosting
Feasibility Studies
Drug Repositioning
Learning systems
Classifiers
1 Citation (Scopus)

Improved tendon tracking using singular value decomposition clutter suppression

Bandaru, R. S., Evers, S., Selles, R. W., Thoreson, A. R., Amadio, P. C., Hovius, S. E. & Bosch, J. G., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8091977

Research output: Chapter in Book/Report/Conference proceedingConference contribution

tendons
clutter
retarding
decomposition
ground truth

Improved tendon tracking using singular value decomposition clutter suppression

Bandaru, R. S., Evers, S., Selles, R. W., Thoreson, A. R., Amadio, P. C. & Bosch, J. G., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8091643

Research output: Chapter in Book/Report/Conference proceedingConference contribution

tendons
clutter
retarding
cross correlation
decomposition
2 Citations (Scopus)

Improving instructions to stop the bleed

Forsyth, K. L., Lowndes, B. R., Prytz, E., Jonson, C. O., Sztajnkrycer, M. D., Heller, S. F., Hallbeck, S. & Blocker, R., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 588-592 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

National security
instruction
confidence
Group
life situation

Integration of Accountable Care Organization and Additional Hospital Data into CMS Referral Analytics System

Ru, B., Wu, Q., Wang, X., Yao, L. & Jia, Y., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Cummins, M., Facelli, J., Meixner, G., Giraud-Carrier, C. & Nakajima, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 357-361 5 p. 8031174

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accountable Care Organizations
Centers for Medicare and Medicaid Services (U.S.)
Referral and Consultation
Physicians
Government Agencies
1 Citation (Scopus)

Iterative implementation of a remote cardiac patient monitoring device using qualitative analysis and human factors engineering

Lowndes, B. R., Finnie, D., Hathaway, J., Ridgeway, J. L., Vickers-Douglas, K., Bruce, C. J. & Hallbeck, S., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 1081-1085 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient monitoring
Human engineering
engineering
monitoring
Education
2 Citations (Scopus)

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients

Moon, S., Liu, S., Kingsbury, P., Chen, D., Wang, Y., Shen, F., Chaudhry, R. & Liu, H. D., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 1495-1500 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Facsimile
Optical character recognition
Consultants
Medical Records
Health

Multitask LS-Svm for Predicting Bleeding and Re-operation Due to Bleeding

Ngufor, C., Murphree, D. H., Upadhyaya, S., Pathak, J. & Kor, D. J., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 56-65 10 p. 8031132

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hemorrhage
Blood Transfusion
Learning
Aptitude
Least-Squares Analysis
2 Citations (Scopus)

Ngomsl simulation model in an emergency department

Parameshwara, N., Kim, J. H., Guo, W. & Pasupathy, K. S., Jan 17 2017, 2016 Winter Simulation Conference: Simulating Complex Service Systems, WSC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1938-1949 12 p. 7822239

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Emergency
Simulation Model
Chart
Workload
Computer simulation languages
1 Citation (Scopus)

On Mapping Textual Queries to a Common Data Model

Liu, S., Wang, Y., Hong, N., Shen, F., Wu, S., Hersh, W. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 21-25 5 p. 8031127

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Information Storage and Retrieval
Semantics
Research
1 Citation (Scopus)

Optimizing emergency department workflow using radio frequency identification device (RFID) data analytics

Arunachalam, S. P., Sir, M., Marisamy, G., Sadosty, A., Nestler, D., Hellmich, T. & Pasupathy, K. S., Jan 1 2017, Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017. American Society of Mechanical Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Radio frequency identification (RFID)
5 Citations (Scopus)

Phenotypic analysis of clinical narratives using human phenotype ontology

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 581-585 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Phenotype
Medicine
Data mining
Precision Medicine
1 Citation (Scopus)

Physician interruptions and workload during emergency department shifts

El-Sherif, N., Hawthorne, H. J., Forsyth, K. L., Abdelrahman, A., Hallbeck, S. & Blocker, R., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 649-652 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

workload
NASA
physician
Analysis of variance (ANOVA)
descriptive statistics
1 Citation (Scopus)

Shiny FHIR: An integrated framework leveraging shiny R and HL7 FHIR to empower standards-based clinical data applications

Hong, N., Prodduturi, N., Wang, C. & Jiang, G. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. p. 868-872 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Servers
Workflow
Statistics
Ovarian Neoplasms
Testing

Simulation of triaging patients into an internal medicine department to validate the use of an optimization based workload score

Agor, J., Mckenzie, K., Ozaltin, O., Mayorga, M., Parikh, R. S. & Huddleston, J., Jan 17 2017, 2016 Winter Simulation Conference: Simulating Complex Service Systems, WSC 2016. Institute of Electrical and Electronics Engineers Inc., p. 3708-3709 2 p. 7822411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medicine
Workload
Internal
Proportion
Optimization

Tactile feedback wearable during a surgical simulation task: Pilot study indicates no distraction, frustration or performance decrement for users

Lowndes, B., Abdelrahman, A., Yu, D., Lachman, N. & Hallbeck, S., Jan 1 2017, Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017. American Society of Mechanical Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feedback
3 Citations (Scopus)

Technical challenges and opportunities when implementing pharmacogenomics decision support integrated in the electronic health record

Caraballo, P., Sutton, J. A., Moyer, A., Blair, D., Hines, L. C., Rao, P. S., Adams, M. F., Murthy, S., Garza, T., Karow, M. E., Singh, H., Giri, J., Gabrielson, D. B., St. Sauver, J., Bielinski, S. J. & Parkulo, M. A., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Pharmacogenetics
Health
Guidelines
2 Citations (Scopus)

Unraveling complex local genomic rearrangements from long-read data

Stephens, Z. D., Iyer, R. K., Wang, C. & Kocher, J-P., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 181-187 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA
Genomic Structural Variation
Sequence Inversion
DNA Replication
Datasets
4 Citations (Scopus)

Unsupervised single-cell analysis in triple-negative breast cancer: A case study

Athreya, A. P., Gaglio, A. J., Kalbarczyk, Z. T., Iyer, R. K., Cairns, J., Kalari, K. R., Weinshilboum, R. M. & Wang, L. M., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 556-563 8 p. 7822581

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Triple Negative Breast Neoplasms
Single-Cell Analysis
Genes
Metformin
Overlapping Genes
6 Citations (Scopus)

Using human phenotype ontology for phenotypic analysis of clinical notes

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Phenotype
Vocabulary
Genotype
1 Citation (Scopus)

Using Unstructured Data to Identify Readmitted Patients

Rastegar-Mojarad, M., Lovely, J. K., Pankratz, J., Sohn, S., Ihrke, D. M., Merchea, A., Larson, D. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8031124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient Readmission
Electronic Health Records
Ambulatory Surgical Procedures
Datasets
2 Citations (Scopus)

Visual FHIR: An Interactive Browser to Navigate HL7 FHIR Specification

Hong, N., Wang, K., Yao, L. & Jiang, G. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 26-30 5 p. 8031128

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Delivery of Health Care
Learning Curve
Electronic Health Records
Semantics
2016

Combining science with art to educate and motivate patients prior to colorectal cancer screening

de Groen, P. C., Patel, S., Lopez, M., Szewczynski, M. & Toulson, R., 2016, Smart Education and e-Learning 2016. Springer Science and Business Media Deutschland GmbH, Vol. 59. p. 315-328 14 p. (Smart Innovation, Systems and Technologies; vol. 59).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Screening
Education
Colorectal cancer
Cancer screening
Art
4 Citations (Scopus)

Identifying peripheral arterial disease cases using natural language processing of clinical notes

Afzal, N., Sohn, S., Abram, S., Liu, H. D., Kullo, I. J. & Arruda-Olson, A. M., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 126-131 6 p. 7455851

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
Peripheral Arterial Disease
Patient Care
Chronic Disease
Research

LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes

Liu, S., Chaudhary, V., Wang, L. & Liu, H. D., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 302 1 p. 7776360

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Glucose
Health
Medical problems
electronics
3 Citations (Scopus)

Linking Patient Alone Time and Provider Time to Staffing Levels and LOS at the Emergency Department: A RFID Based Study

Arunachalam, S. P., Marisamy, G., Sir, M., Nestler, D., Hellmich, T. & Pasupathy, K. S., Dec 6 2016, Proceedings - 2016 IEEE International Conference on Healthcare Informatics, ICHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 102-105 4 p. 7776333

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Radio Frequency Identification Device
staffing level
Radio frequency identification (RFID)
Hospital Emergency Service
Length of Stay
12 Citations (Scopus)

MayoNLP at SemEval-2016 task 1: Semantic textual similarity based on lexical semantic net and deep learning semantic model

Afzal, N., Wang, Y. & Liu, H. D., Jan 1 2016, SemEval 2016 - 10th International Workshop on Semantic Evaluation, Proceedings. Association for Computational Linguistics (ACL), p. 674-679 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Similarity
Semantics
Weighted Mean
Model
Assign

On developing resources for patient-level information retrieval

Wu, S., Timmons, T., Yates, A., Wang, M., Bedrick, S., Hersh, W. & Liu, H. D., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 3412-3416 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

information retrieval
resources
privacy
innovation research
paradigm
4 Citations (Scopus)

Prioritizing adverse drug reaction and drug repositioning candidates generated by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Wang, L., Prasad, R. & Liu, H. D., Oct 2 2016, ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 289-296 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature Based Discovery
Drug Repositioning
Drug-Related Side Effects and Adverse Reactions
Classifiers
Pharmaceutical Preparations

Quantitative characterization of brain β-amyloid in 718 normal subjects using a joint PiB/FDG PET image histogram

Camp, J. J., Hanson, D. P., Lowe, V., Kemp, B. J., Senjem, M. L., Murray, M. E., Dickson, D. W., Parisi, J. E., Petersen, R. C., Robb, R. A. & Holmes III, D. R., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785. 97852V

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amyloid
histograms
brain
autopsies
Brain
1 Citation (Scopus)

Staggered NLP-assisted refinement for clinical annotations of chronic disease events

Wu, S. T., Wi, C. I., Sohn, S., Liu, H. D. & Juhn, Y. J., Jan 1 2016, Proceedings of the 10th International Conference on Language Resources and Evaluation, LREC 2016. European Language Resources Association (ELRA), p. 426-429 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Disease
event
Natural Language Processing
Annotation
Chronic Disease

Translational bioinformatics 101

Tenenbaum, J. D., Madhavan, S., Freimuth, R., Denny, J. C. & Frey, L., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 552-556 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bioinformatics
Computational Biology
1 Citation (Scopus)

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
2015
2 Citations (Scopus)

A clinical decision support system for preventing adverse reactions to blood transfusion

Murphree, D. H., Clifford, L., Lin, Y., Madde, N., Ngufor, C., Upadhyaya, S., Pathak, J. & Kor, D. J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 100-104 5 p. 7349680

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical Decision Support Systems
Blood Transfusion
Health Information Systems
Perioperative Care
Acute Lung Injury
1 Citation (Scopus)

A domain ontology for the Non-Coding RNA field

Huang, J., Eilbeck, K., Blake, J. A., Dou, D., Natale, D. A., Ruttenberg, A., Smith, B., Zimmermann, M. T., Jiang, G. D., Lin, Y., Wu, B., He, Y., Zhang, S., Wang, X., Zhang, H., Liu, Z. & Tan, M., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 621-624 4 p. 7359755

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Untranslated RNA
RNA
Ontology
Controlled Vocabulary
Thesauri

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing

Li, D., Rastegar Mojarad, M., Li, Y., Sohn, S., Mehrabi, S., Komandur Elayavilli, R., Yu, Y. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1033-1034 2 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crowdsourcing
Health
Confidentiality
2 Citations (Scopus)

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Li, D., Rastegar-Mojarad, M., Elayavilli, R. K., Wang, Y., Mehrabi, S., Yu, Y., Sohn, S., Li, Y., Afzal, N. & Liu, H. D., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 315-324 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health
Natural Language Processing
Electronic medical equipment
Electronic Health Records
Information Dissemination
4 Citations (Scopus)

A heterogeneous multi-task learning for predicting RBC transfusion and perioperative outcomes

Ngufor, C., Upadhyaya, S., Murphree, D., Madde, N., Kor, D. J. & Pathak, J., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9105. p. 287-297 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9105).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-task Learning
Red Blood Cells
Intensive care units
Blood
Multiple Outcomes
7 Citations (Scopus)

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Li, D., Prasad, R. & Liu, H. D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 669-674 6 p. 7359766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature Based Discovery
Drug Repositioning
Genes
Pharmaceutical Preparations
Toxicogenetics

A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL

Hong, N., Jiang, G. D., Pathak, J. & Chute, C. G., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1093 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Semantics
Language
Ontology
1 Citation (Scopus)

Application of sociometer badges in simulated health environments: Can wearable devices quantify individual's workload?

Yu, D., Blocker, R., Hallbeck, S., Sir, M., Hellmich, T. & Pasupathy, K. S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 538-542 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health care
workload
Health
health care
health
2 Citations (Scopus)

A Preliminary study of novice workload and performance during surgical simulation tasks for conventional vs. single incision laparoscopic techniques

Lowndes, B., Abdelrahman, A., McCrory, B. & Hallbeck, S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 498-502 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Laparoscopy
workload
Surgery
surgery
simulation
2 Citations (Scopus)

A sequential data analysis approach to electronic health record workflow

Kaufman, D. R., Furniss, S. K., Grando, M. A., Larson, D. & Burton, M. M., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 218. p. 120-125 6 p. (Studies in Health Technology and Informatics; vol. 218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Workflow
Electronic Health Records
Health
1 Citation (Scopus)

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Literature
Pharmaceutical Preparations
Toxicogenetics
Semantics
Databases
4 Citations (Scopus)

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution

Jiang, G. D., Solbrig, H. R., Kiefer, R., Rasmussen, L. V., Mo, H., Speltz, P., Thompson, W. K., Denny, J. C., Chute, C. G. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1098 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Metadata
Semantics
Health
Phenotype
1 Citation (Scopus)

A systematic prediction of adverse drug reactions using pre-clinical drug characteristics and spontaneous reports

Ngufor, C., Wojtusiak, J. & Pathak, J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 76-81 6 p. 7349677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug-Related Side Effects and Adverse Reactions
Computing Methodologies
Pharmaceutical Preparations
Marketing
Clinical Trials

Bioinformatics strategies for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing

Champion, M. D., Hlady, R. A., Yan, H. D., Evans, J., Nie, J., Lee, J. H., Bogenberger, J., Nandakumar, K., Davila, J., Moore, R., Nair, A., O'Brien, D., Zhu, Y. X., Kortum, K. M., Ordog, T., Zhang, Z., Joseph, R. W., Stewart, A. K., Kocher, J-P., Jonasch, E. & 3 others, Robertson, K. D., Tibes, R. & Ho, T. H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. SciTePress, p. 163-170 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA Editing
Deregulation
Bioinformatics
Computational Biology
RNA
6 Citations (Scopus)

BmQGen: Biomedical query generator for knowledge discovery

Shen, F., Liu, H. D., Sohn, S., Larson, D. & Lee, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1092-1097 6 p. 7359833

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Data mining
Ontology
Translational Medical Research
Biological Science Disciplines

Bridging vaccine ontology and NCIt vaccine domain for cancer vaccine data integration and analysis

He, Y. & Jiang, G. D., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1515.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thesauri
Vaccines
Data integration
Ontology
Foundries
1 Citation (Scopus)

Clinical decision making: A framework for predicting Rx response

Sathyanarayana, A., Pathak, J., McCoy, R., Romero-Brufau, S., Panaziahar, M. & Srivastava, J., Jan 26 2015, IEEE International Conference on Data Mining Workshops, ICDMW. January ed. IEEE Computer Society, Vol. 2015-January. p. 1185-1188 4 p. 7022730

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Decision making
Medical problems
Decision trees