Abstract
Phenotypes are defined as observable characteristics of organisms. To facilitate the translation between genotype and phenotype, Human Phenotype Ontology (HPO) was developed as a semantically computable standardized vocabulary to capture phenotypic abnormalities found in human. In this study, we investigated the use of HPO to annotate phenotypic information in clinical domain by leveraging a corpus of 12.8 million clinical notes created from 2010 to 2015 for 729 thousand patients at Mayo Clinic Rochester campus.
| Original language | English (US) |
|---|---|
| Title of host publication | MEDINFO 2017 |
| Subtitle of host publication | Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics |
| Publisher | IOS Press |
| Number of pages | 1 |
| Volume | 245 |
| ISBN (Electronic) | 9781614998297 |
| DOIs | |
| State | Published - Jan 1 2017 |
| Event | 16th World Congress of Medical and Health Informatics: Precision Healthcare through Informatics, MedInfo 2017 - Hangzhou, China Duration: Aug 21 2017 → Aug 25 2017 |
Publication series
| Name | Studies in Health Technology and Informatics |
|---|---|
| Volume | 245 |
| ISSN (Print) | 0926-9630 |
| ISSN (Electronic) | 1879-8365 |
Other
| Other | 16th World Congress of Medical and Health Informatics: Precision Healthcare through Informatics, MedInfo 2017 |
|---|---|
| Country | China |
| City | Hangzhou |
| Period | 8/21/17 → 8/25/17 |
Fingerprint
Keywords
- Human phenotype ontology
- Phenotypic analysis
- Semantics
ASJC Scopus subject areas
- Biomedical Engineering
- Health Informatics
- Health Information Management
Cite this
Using human phenotype ontology for phenotypic analysis of clinical notes. / Shen, Feichen; Wang, Liwei; Liu, Hongfang D.
MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Vol. 245 IOS Press, 2017. (Studies in Health Technology and Informatics; Vol. 245).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Using human phenotype ontology for phenotypic analysis of clinical notes
AU - Shen, Feichen
AU - Wang, Liwei
AU - Liu, Hongfang D
PY - 2017/1/1
Y1 - 2017/1/1
N2 - Phenotypes are defined as observable characteristics of organisms. To facilitate the translation between genotype and phenotype, Human Phenotype Ontology (HPO) was developed as a semantically computable standardized vocabulary to capture phenotypic abnormalities found in human. In this study, we investigated the use of HPO to annotate phenotypic information in clinical domain by leveraging a corpus of 12.8 million clinical notes created from 2010 to 2015 for 729 thousand patients at Mayo Clinic Rochester campus.
AB - Phenotypes are defined as observable characteristics of organisms. To facilitate the translation between genotype and phenotype, Human Phenotype Ontology (HPO) was developed as a semantically computable standardized vocabulary to capture phenotypic abnormalities found in human. In this study, we investigated the use of HPO to annotate phenotypic information in clinical domain by leveraging a corpus of 12.8 million clinical notes created from 2010 to 2015 for 729 thousand patients at Mayo Clinic Rochester campus.
KW - Human phenotype ontology
KW - Phenotypic analysis
KW - Semantics
UR - http://www.scopus.com/inward/record.url?scp=85040529028&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85040529028&partnerID=8YFLogxK
U2 - 10.3233/978-1-61499-830-3-1285
DO - 10.3233/978-1-61499-830-3-1285
M3 - Conference contribution
C2 - 29295370
AN - SCOPUS:85040529028
VL - 245
T3 - Studies in Health Technology and Informatics
BT - MEDINFO 2017
PB - IOS Press
ER -