Unintegrated Lentivirus DNA Persistence and Accessibility to Expression in Nondividing Cells

Analysis with Class I Integrase Mutants

Dyana T. Saenz, Nils Loewen, Mary Peretz, Todd Whitwam, Román Barraza, Kyle G. Howell, Jonathan M Holmes, Margaret Good, Eric M. Poeschla

Research output: Contribution to journalArticle

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Abstract

The circumstances under which unintegrated lentivirus DNA can persist and be a functional template for transcription and protein expression are not clear. We constructed and validated the first class I (nonpleiotropic) integrase (IN) mutants for a non-human lentivirus (feline immunodeficiency virus [FIV]) and analyzed both these and known class I human immunodeficiency virus type 1 IN mutants. The FIV IN mutants (D66V and D66V/D118A) had class I properties: Gag/Pol precursor expression, proteolytic processing, particle formation, and reverse transcriptase (RT) production were normal, while the transduction of dividing fibroblasts was prevented and integration was blocked. When injected into rat retinas, the wild-type (WT) vector produced extensive, persistent transgene expression, compared with only rare positive neuronal cells for the IN mutant vector. In contrast, both WT and mutant vectors produced entirely equivalent, effective transduction levels of primary rat neurons (retinal ganglion cells). By testing the hypothesis that the unexpected retinal neuron transduction was related to cell cycle status, we found that when fibroblasts were growth arrested, transduction and internally promoted transgene expression were not inhibited at all by the class I FIV or HIV-1 IN mutations. Cells were then transduced under aphidicolin arrest and were released from the block 48 h later. Vector expression was stable and durable during repeated passaging in WT vector-transduced cells, while the release of cells transduced with equivalent RT units of class I IN mutant FIV or HIV vector resulted in a steady decline of expression, from 97 to 0% of cells by day 10. Southern blot and PCR analyses showed a lack of integration, irrespective of cell cycle, for the class I mutants and an increase in one- and two-long terminal repeat circular and linear unintegrated DNAs in growth-arrested cells. We conclude that if cell division is prevented, unintegrated FIV and HIV-1 vector DNAs can produce high-level internally promoted transgene expression equivalent to WT vectors. The expression correlates with the unintegrated DNA levels. These observations may facilitate the study of the roles of IN and other preintegration complex components in preintegration phases of infection by (i) providing an alternative way to monitor unintegrated nuclear cDNA forms, (ii) restricting ascertainment to the transcriptionally functional subset of unintegrated DNA, (iii) enabling analysis in individual, nondividing cells, and (iv) uncoupling other potential functions of IN from integration.

Original languageEnglish (US)
Pages (from-to)2906-2920
Number of pages15
JournalJournal of Virology
Volume78
Issue number6
DOIs
StatePublished - Mar 2004

Fingerprint

Integrases
Lentivirus
Feline Immunodeficiency Virus
Feline immunodeficiency virus
mutants
DNA
Human immunodeficiency virus 1
Transgenes
transgenes
cells
RNA-directed DNA polymerase
neurons
RNA-Directed DNA Polymerase
fibroblasts
HIV-1
cell cycle
Cell Cycle
Fibroblasts
Aphidicolin
Retinal Neurons

ASJC Scopus subject areas

  • Immunology

Cite this

Unintegrated Lentivirus DNA Persistence and Accessibility to Expression in Nondividing Cells : Analysis with Class I Integrase Mutants. / Saenz, Dyana T.; Loewen, Nils; Peretz, Mary; Whitwam, Todd; Barraza, Román; Howell, Kyle G.; Holmes, Jonathan M; Good, Margaret; Poeschla, Eric M.

In: Journal of Virology, Vol. 78, No. 6, 03.2004, p. 2906-2920.

Research output: Contribution to journalArticle

Saenz, Dyana T. ; Loewen, Nils ; Peretz, Mary ; Whitwam, Todd ; Barraza, Román ; Howell, Kyle G. ; Holmes, Jonathan M ; Good, Margaret ; Poeschla, Eric M. / Unintegrated Lentivirus DNA Persistence and Accessibility to Expression in Nondividing Cells : Analysis with Class I Integrase Mutants. In: Journal of Virology. 2004 ; Vol. 78, No. 6. pp. 2906-2920.
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