The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization

Christopher A G Söderberg, Sreekanth Rajan, Alexander V. Shkumatov, Oleksandr Gakh, Susanne Schaefer, Eva Christina Ahlgren, Dmitri I. Svergun, Grazia Isaya, Salam Al-Karadaghi

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Abstract

The role of the mitochondrial protein frataxin in iron storage and detoxification, iron delivery to iron-sulfur cluster biosynthesis, heme biosynthesis, and aconitase repair has been extensively studied during the last decade. However, still no general consensus exists on the details of the mechanism of frataxin function and oligomerization. Here, using small-angle x-ray scattering and x-ray crystallography, we describe the solution structure of the oligomers formed during the iron-dependent assembly of yeast (Yfh1) and Escherichia coli (CyaY) frataxin. At an iron-to-protein ratio of 2, the initially monomeric Yfh1 is converted to a trimeric form in solution. The trimer in turn serves as the assembly unit for higher order oligomers induced at higher iron-to-protein ratios. The x-ray crystallographic structure obtained from iron-soaked crystals demonstrates that iron binds at the trimer-trimer interaction sites, presumably contributing to oligomer stabilization. For the ferroxidation-deficient D79A/D82A variant of Yfh1, iron-dependent oligomerization may still take place, although >50% of the protein is found in the monomeric state at the highest iron-to-protein ratio used. This demonstrates that the ferroxidation reaction controls frataxin assembly and presumably the iron chaperone function of frataxin and its interactions with target proteins. For E. coli CyaY, the assembly unit of higher order oligomers is a tetramer, which could be an effect of the much shorter N-terminal region of this protein. The results show that understanding of the mechanistic features of frataxin function requires detailed knowledge of the interplay between the ferroxidation reaction, iron-induced oligomerization, and the structure of oligomers formed during assembly.

Original languageEnglish (US)
Pages (from-to)8156-8167
Number of pages12
JournalJournal of Biological Chemistry
Volume288
Issue number12
DOIs
StatePublished - Mar 22 2013

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Oligomerization
Iron
Oligomers
Proteins
Biosynthesis
X-Rays
X rays
Escherichia coli
frataxin
Aconitate Hydratase
Detoxification
Crystallography
Mitochondrial Proteins
Heme
Sulfur
Yeast
Repair
Stabilization
Yeasts

ASJC Scopus subject areas

  • Biochemistry
  • Cell Biology
  • Molecular Biology

Cite this

Söderberg, C. A. G., Rajan, S., Shkumatov, A. V., Gakh, O., Schaefer, S., Ahlgren, E. C., ... Al-Karadaghi, S. (2013). The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization. Journal of Biological Chemistry, 288(12), 8156-8167. https://doi.org/10.1074/jbc.M112.442285

The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization. / Söderberg, Christopher A G; Rajan, Sreekanth; Shkumatov, Alexander V.; Gakh, Oleksandr; Schaefer, Susanne; Ahlgren, Eva Christina; Svergun, Dmitri I.; Isaya, Grazia; Al-Karadaghi, Salam.

In: Journal of Biological Chemistry, Vol. 288, No. 12, 22.03.2013, p. 8156-8167.

Research output: Contribution to journalArticle

Söderberg, CAG, Rajan, S, Shkumatov, AV, Gakh, O, Schaefer, S, Ahlgren, EC, Svergun, DI, Isaya, G & Al-Karadaghi, S 2013, 'The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization', Journal of Biological Chemistry, vol. 288, no. 12, pp. 8156-8167. https://doi.org/10.1074/jbc.M112.442285
Söderberg, Christopher A G ; Rajan, Sreekanth ; Shkumatov, Alexander V. ; Gakh, Oleksandr ; Schaefer, Susanne ; Ahlgren, Eva Christina ; Svergun, Dmitri I. ; Isaya, Grazia ; Al-Karadaghi, Salam. / The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization. In: Journal of Biological Chemistry. 2013 ; Vol. 288, No. 12. pp. 8156-8167.
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