Principles and approaches for discovery and validation of somatic mosaicism in the human brain

Alexej Abyzov, Alexander E. Urban, Flora M. Vaccarino

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

Mosaic variants are by definition present in just some of the cells that make up a given tissue. The frequency of such mosaic variants in that cell population depends on many factors, including when they originated during development, and whether they affect rates or patterns of cellular proliferation or are subject to selection of the cells carrying them. Their confident detection depends on combinations of the following four factors: (1) frequency, type, and functional effect of a mosaic variant; (2) strategy utilized for the discovery (single cell or bulk analyses); (3) applied experimental and analytical method (e.g., sequencing, droplet digital PCR); and (4) funds and effort that can be invested into each experiment. Furthermore, none of the existing strategies and techniques are universally applicable, nor cost effective, to find variants of all types. Studies aimed at discovering mosaic variants should carefully balance strategy, experimental and computational techniques, funds, and effort to carry out experiments and analyses that will allow the aims to be achieved.

Original languageEnglish (US)
Title of host publicationNeuromethods
PublisherHumana Press Inc.
Pages3-24
Number of pages22
Volume131
DOIs
StatePublished - 2017

Publication series

NameNeuromethods
Volume131
ISSN (Print)0893-2336
ISSN (Electronic)1940-6045

Keywords

  • Amplicon-Seq
  • Array comparative genome hybridization (aCGH)
  • DNA fragment capture
  • Flow cytometry
  • Fluorescence in situ hybridization (FISH)
  • L1-enrichment
  • Single-nucleotide polymorphism (SNP) array
  • Whole-genome amplification (WGA)
  • Whole-genome sequencing

ASJC Scopus subject areas

  • Neuroscience(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Pharmacology, Toxicology and Pharmaceutics(all)
  • Psychiatry and Mental health

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  • Cite this

    Abyzov, A., Urban, A. E., & Vaccarino, F. M. (2017). Principles and approaches for discovery and validation of somatic mosaicism in the human brain. In Neuromethods (Vol. 131, pp. 3-24). (Neuromethods; Vol. 131). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7280-7_1