Plasma proteome database as a resource for proteomics research

Babylakshmi Muthusamy, G. Hanumanthu, Shubha Suresh, B. Rekha, D. Srinivas, L. Karthick, B. M. Vrushabendra, Salil Sharma, Goparani Mishra, Pritam Chatterjee, K. S. Mangala, H. N. Shivashankar, K. N. Chandrika, Nandan Deshpande, M. Suresh, N. Kannabiran, Vidya Niranjan, Anuradha Nalli, T. S.Keshava Prasad, K. S. ArunRaghunath Reddy, Sreenath Chandran, Trafina Jadhav, D. Julie, M. Mahesh, S. Lynate John, Kshitish Palvankar, D. Sudhir, P. Bala, N. S. Rashmi, G. Vishnupriya, Kaushik Dhar, S. Reshma, Raghothama Chaerkady, T. K.B. Gandhi, H. C. Harsha, S. Sujatha Mohan, Krishna S. Deshpande, Malabika Sarker, Akhilesh Pandey

Research output: Contribution to journalArticlepeer-review

107 Scopus citations

Abstract

Plasma is one of the best studied compartments in the human body and serves as an ideal body fluid for the diagnosis of diseases. This report provides a detailed functional annotation of all the plasma proteins identified to date. In all, gene products encoded by 3778 distinct genes were annotated based on proteins previously published in the literature as plasma proteins and the identification of multiple peptides from proteins under HUPO's Plasma Proteome Project. Our analysis revealed that 51% of these genes encoded more than one protein isoform. All single nucleotide polymorphisms involving protein-coding regions were mapped onto the protein sequences. We found a number of examples of isoform-specific subcellular localization as well as tissue expression. This database is an attempt at comprehensive annotation of a complex subproteome and is available on the web at http://www.plasmaproteomedatabase.org.

Original languageEnglish (US)
Pages (from-to)3531-3536
Number of pages6
JournalProteomics
Volume5
Issue number13
DOIs
StatePublished - Aug 2005

Keywords

  • Annotation
  • HUPO
  • Mass spectrometry
  • Plasma proteome project
  • Subproteomes
  • Systems biology

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology

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