TY - JOUR
T1 - PathBuilder - Open source software for annotating and developing pathway resources
AU - Kandasamy, Kumaran
AU - Keerthikumar, Shivakumar
AU - Raju, Rajesh
AU - Keshava Prasad, T. S.
AU - Ramachandra, Y. L.
AU - Mohan, Sujatha
AU - Pandey, Akhilesh
N1 - Funding Information:
Funding: National Institute of Health Roadmap Initiative (grant U54RR020839); National Heart Lung and Blood Institute (contract N01-HV-28180); Department of Defense Era of Hope Scholar award (W81XWH-06-1-0428.
PY - 2009
Y1 - 2009
N2 - Summary: We have developed PathBuilder, an open-source web application to annotate biological information pertaining to signaling pathways and to create web-based pathway resources. PathBuilder enables annotation of molecular events including protein-protein interactions, enzyme-substrate relationships and protein translocation events either manually or through automated importing of data from other databases. Salient features of PathBuilder include automatic validation of data formats, built-in modules for visualization of pathways, automated import of data from other pathway resources, export of data in several standard data exchange formats and an application programming interface for retrieving existing pathway datasets.
AB - Summary: We have developed PathBuilder, an open-source web application to annotate biological information pertaining to signaling pathways and to create web-based pathway resources. PathBuilder enables annotation of molecular events including protein-protein interactions, enzyme-substrate relationships and protein translocation events either manually or through automated importing of data from other databases. Salient features of PathBuilder include automatic validation of data formats, built-in modules for visualization of pathways, automated import of data from other pathway resources, export of data in several standard data exchange formats and an application programming interface for retrieving existing pathway datasets.
UR - http://www.scopus.com/inward/record.url?scp=70350664651&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=70350664651&partnerID=8YFLogxK
U2 - 10.1093/bioinformatics/btp453
DO - 10.1093/bioinformatics/btp453
M3 - Article
C2 - 19628504
AN - SCOPUS:70350664651
SN - 1367-4803
VL - 25
SP - 2860
EP - 2862
JO - Bioinformatics
JF - Bioinformatics
IS - 21
ER -