Intrinsically disordered chromatin protein NUPR1 binds to the C-terminal region of polycomb RING1B

Patricia Santofimia-Castaño, Bruno Rizzuti, Ángel L. Pey, Philippe Soubeyran, Miguel Vidal, Raúl Urrutia, Juan L. Iovanna, José L. Neira

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Intrinsically disordered proteins (IDPs) are ubiquitous in eukaryotes, and they are often associated with diseases in humans. The protein NUPR1 is a multifunctional IDP involved in chromatin remodeling and in the development and progression of pancreatic cancer; however, the details of such functions are unknown. Polycomb proteins are involved in specific transcriptional cascades and gene silencing. One of the proteins of the Polycomb complex is the Ring finger protein 1 (RING1). RING1 is related to aggressive tumor features in multiple cancer types. In this work we characterized the interaction between NUPR1 and the paralogue RING1B in vitro, in silico, and in cellulo. The interaction occurred through the C-terminal region of RING1B (C-RING1B), with an affinity in the low micromolar range (~10 µM). The binding region of NUPR1, mapped by NMR, was a hydrophobic polypeptide patch at the 30s region of its sequence, as pinpointed by computational results and site-directed mutagenesis at Ala33. The association between C-RING1B and wild-type NUPR1 also occurred in cellulo as tested by protein ligation assays; this interaction is inhibited by trifluoperazine, a drug known to hamper binding of wild-type NUPR1 with other proteins. Furthermore, the Thr68Gln and Ala33Gln/Thr68Gln mutants had a reduction in the binding toward C-RING1B as shown by in vitro, in silico, and in cellulo studies. This is an example of a well-folded partner of NUPR1, because its other interacting proteins are also unfolded. We hypothesize that NUPR1 plays an active role in chromatin remodeling and carcinogenesis, together with Polycomb proteins.

Original languageEnglish (US)
Pages (from-to)E6332-E6341
JournalProceedings of the National Academy of Sciences of the United States of America
Volume114
Issue number31
DOIs
StatePublished - Aug 1 2017

Fingerprint

Intrinsically Disordered Proteins
Chromatin
Proteins
Chromatin Assembly and Disassembly
Computer Simulation
Fingers
Trifluoperazine
Protein Unfolding
Gene Silencing
Site-Directed Mutagenesis
Eukaryota
Pancreatic Neoplasms
Ligation
Neoplasms
Carcinogenesis
Peptides

Keywords

  • IDP
  • NUPR1
  • Polycomb group
  • RING1B

ASJC Scopus subject areas

  • General

Cite this

Intrinsically disordered chromatin protein NUPR1 binds to the C-terminal region of polycomb RING1B. / Santofimia-Castaño, Patricia; Rizzuti, Bruno; Pey, Ángel L.; Soubeyran, Philippe; Vidal, Miguel; Urrutia, Raúl; Iovanna, Juan L.; Neira, José L.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, No. 31, 01.08.2017, p. E6332-E6341.

Research output: Contribution to journalArticle

Santofimia-Castaño, P, Rizzuti, B, Pey, ÁL, Soubeyran, P, Vidal, M, Urrutia, R, Iovanna, JL & Neira, JL 2017, 'Intrinsically disordered chromatin protein NUPR1 binds to the C-terminal region of polycomb RING1B', Proceedings of the National Academy of Sciences of the United States of America, vol. 114, no. 31, pp. E6332-E6341. https://doi.org/10.1073/pnas.1619932114
Santofimia-Castaño, Patricia ; Rizzuti, Bruno ; Pey, Ángel L. ; Soubeyran, Philippe ; Vidal, Miguel ; Urrutia, Raúl ; Iovanna, Juan L. ; Neira, José L. / Intrinsically disordered chromatin protein NUPR1 binds to the C-terminal region of polycomb RING1B. In: Proceedings of the National Academy of Sciences of the United States of America. 2017 ; Vol. 114, No. 31. pp. E6332-E6341.
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AU - Soubeyran, Philippe

AU - Vidal, Miguel

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AU - Iovanna, Juan L.

AU - Neira, José L.

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