TY - JOUR
T1 - Interactome of a cardiopoietic precursor.
AU - Faustino, Randolph S.
AU - Terzic, Andre
N1 - Funding Information:
Acknowledgments This work was supported by the National Institutes of Health, Marriott Heart Disease Research Program, Marriott Foundation, Ted Nash Long Life Foundation, Ralph Wilson Medical Research Foundation, and Asper Foundation.
PY - 2008/6
Y1 - 2008/6
N2 - Pluripotency is a hallmark feature of embryonic stem cells, but concomitantly expressed transcripts confound resolution of specific developmental signaling axes. Ratification of a molecular fingerprint critical to cardiogenesis mandated investigation of gene expression in stem-cell-derived cardiac precursors undergoing guided differentiation to define genomic networks responsible for cardiogenic progression. Upregulated transcripts organized into a discrete network with enhanced themes of "cardiovascular development" and "cellular movement", while downregulated transcripts demonstrated significant overrepresentation of "oncogenesis" and "gene expression". Ontological characterization of molecular functions revealed robust enrichment of binding factor classifications that bolstered upregulated themes of cardiovascular development and cellular movement, and significant nonstochastic overrepresentation of gene metabolism that drove oncogenic and gene expression network themes in downregulated transcripts. Collectively, these global adjustments engaged a systems biology repertoire switch towards functional specification. Thus, resolution of a precursor pedigree reveals coordinated themes that facilitate a nascent interactome which guides embryonic stem cell cardiopoiesis.
AB - Pluripotency is a hallmark feature of embryonic stem cells, but concomitantly expressed transcripts confound resolution of specific developmental signaling axes. Ratification of a molecular fingerprint critical to cardiogenesis mandated investigation of gene expression in stem-cell-derived cardiac precursors undergoing guided differentiation to define genomic networks responsible for cardiogenic progression. Upregulated transcripts organized into a discrete network with enhanced themes of "cardiovascular development" and "cellular movement", while downregulated transcripts demonstrated significant overrepresentation of "oncogenesis" and "gene expression". Ontological characterization of molecular functions revealed robust enrichment of binding factor classifications that bolstered upregulated themes of cardiovascular development and cellular movement, and significant nonstochastic overrepresentation of gene metabolism that drove oncogenic and gene expression network themes in downregulated transcripts. Collectively, these global adjustments engaged a systems biology repertoire switch towards functional specification. Thus, resolution of a precursor pedigree reveals coordinated themes that facilitate a nascent interactome which guides embryonic stem cell cardiopoiesis.
UR - http://www.scopus.com/inward/record.url?scp=54349124399&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=54349124399&partnerID=8YFLogxK
U2 - 10.1007/s12265-008-9019-z
DO - 10.1007/s12265-008-9019-z
M3 - Review article
C2 - 20559906
AN - SCOPUS:54349124399
SN - 1937-5387
VL - 1
SP - 120
EP - 126
JO - Journal of Cardiovascular Translational Research
JF - Journal of Cardiovascular Translational Research
IS - 2
ER -