Genetic diversity and function in the human cytosolic sulfotransferases

M. A T Hildebrandt, D. P. Carrington, B. A. Thomae, B. W. Eckloff, Daniel J Schaid, V. C. Yee, Richard M Weinshilboum, Eric D Wieben

Research output: Contribution to journalArticle

39 Citations (Scopus)

Abstract

Amino-acid substitutions, which result from common nonsynonymous (NS) polymorphisms, may dramatically alter the function of the encoded protein. Gaining insight into how these substitutions alter function is a step toward acquiring predictability. In this study, we incorporated gene resequencing, functional genomics, amino-acid characterization and crystal structure analysis for the cytosolic sulfotransferases (SULTs) to attempt to gain predictability regarding the function of variant allozymes. Previously, four SULT genes were resequenced in 118 DNA samples. With additional resequencing of the remaining eight SULT family members in the same DNA samples, a total of 217 polymorphisms were revealed. Of 64 polymorphisms identified within 8785 bp of coding regions from SULT genes examined, 25 were synonymous and 39 were NS. Overall, the proportion of synonymous changes was greater than expected from a random distribution of mutations, suggesting the presence of a selective pressure against amino-acid substitutions. Functional data for common variants of five SULT genes have been previously published. These data, together with the SULT1A1 variant allozyme data presented in this paper, showed that the major mechanism by which amino acid changes altered function in a transient expression system was through decreases in immunoreactive protein rather than changes in enzyme kinetics. Additional insight with regard to mechanisms by which NS single nucleotide polymorphisms alter function was sought by analysis of evolutionary conservation, physicochemical properties of the amino-acid substitutions and crystal structure analysis. Neither individual amino-acid characteristics nor structural models were able to accurately and reliably predict the function of variant allozymes. These results suggest that common amino-acid substitutions may not dramatically alter the protein structure, but affect interactions with the cellular environment that are currently not well understood.

Original languageEnglish (US)
Pages (from-to)133-143
Number of pages11
JournalPharmacogenomics Journal
Volume7
Issue number2
DOIs
StatePublished - Apr 2007

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Sulfotransferases
Amino Acid Substitution
Isoenzymes
Amino Acids
Genes
Proteins
Structural Models
DNA
Genomics
Single Nucleotide Polymorphism
Mutation
Enzymes

ASJC Scopus subject areas

  • Pharmacology
  • Molecular Medicine
  • Genetics

Cite this

Genetic diversity and function in the human cytosolic sulfotransferases. / Hildebrandt, M. A T; Carrington, D. P.; Thomae, B. A.; Eckloff, B. W.; Schaid, Daniel J; Yee, V. C.; Weinshilboum, Richard M; Wieben, Eric D.

In: Pharmacogenomics Journal, Vol. 7, No. 2, 04.2007, p. 133-143.

Research output: Contribution to journalArticle

Hildebrandt MAT, Carrington DP, Thomae BA, Eckloff BW, Schaid DJ, Yee VC et al. Genetic diversity and function in the human cytosolic sulfotransferases. Pharmacogenomics Journal. 2007 Apr;7(2):133-143. https://doi.org/10.1038/sj.tpj.6500404
Hildebrandt, M. A T ; Carrington, D. P. ; Thomae, B. A. ; Eckloff, B. W. ; Schaid, Daniel J ; Yee, V. C. ; Weinshilboum, Richard M ; Wieben, Eric D. / Genetic diversity and function in the human cytosolic sulfotransferases. In: Pharmacogenomics Journal. 2007 ; Vol. 7, No. 2. pp. 133-143.
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