Deep Learning Identification of Asthma Inhaler Techniques in Clinical Notes

Bhavani Singh Agnikula Kshatriya, Elham Sagheb, Chung II Wi, Jungwon Yoon, Hee Yun Seol, Young Juhn, Sunghwan Sohn

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

There are significant variabilities in clinicians' guideline-concordant documentation in asthma care. However, assessing clinicians' documentation is not feasible using only structured data but requires labor intensive chart review of electronic health records. Although the national asthma guidelines are available it is still challenging to use them as a real-time tool for providing feedback on adhering documentation guidelines for asthma care improvement. A certain guideline element, such as teaching or reviewing inhaler techniques, is difficult to capture by handcrafted rules since it requires contextual understanding of clinical narratives. This study examined a deep learning based natural language model, Bidirectional Encoder Representations from Transformers (BERT) coupled with distant supervision to identify inhaler techniques from clinical narratives. The BERT model with distant supervision outperformed the rule-based approach and achieved performance gain compared with the BERT without distant supervision.

Original languageEnglish (US)
Title of host publicationProceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020
EditorsTaesung Park, Young-Rae Cho, Xiaohua Tony Hu, Illhoi Yoo, Hyun Goo Woo, Jianxin Wang, Julio Facelli, Seungyoon Nam, Mingon Kang
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages1736-1739
Number of pages4
ISBN (Electronic)9781728162157
DOIs
StatePublished - Dec 16 2020
Event2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020 - Virtual, Seoul, Korea, Republic of
Duration: Dec 16 2020Dec 19 2020

Publication series

NameProceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020

Conference

Conference2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020
Country/TerritoryKorea, Republic of
CityVirtual, Seoul
Period12/16/2012/19/20

Keywords

  • adherence to asthma guidelines
  • deep learning
  • documentation variations
  • natural language processing

ASJC Scopus subject areas

  • Computer Science Applications
  • Information Systems and Management
  • Medicine (miscellaneous)
  • Health Informatics

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