Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

Heidi Bildsoe; Xiaochen Fan; Emilie E. Wilkie; Ator Ashoti; Vanessa J. Jones; Melinda Power; Jing Qin; Junwen Wang; Patrick P.L. Tam; David A.F. Loebel

doi:10.1016/j.dib.2016.09.001

Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

Heidi Bildsoe, Xiaochen Fan, Emilie E. Wilkie, Ator Ashoti, Vanessa J. Jones, Melinda Power, Jing Qin, Junwen Wang, Patrick P.L. Tam, David A.F. Loebel

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Research output: Contribution to journal › Article › peer-review

Abstract

This article contains data related to the research article entitled “Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance” by Bildsoe et al. (2016) [1]. The data presented here are derived from: (1) a microarray-based comparison of sorted cranial mesoderm (CM) and cranial neural crest (CNC) cells from E9.5 mouse embryos; (2) comparisons of transcription profiles of head tissues from mouse embryos with a CM-specific loss-of-function of Twist1 and control mouse embryos collected at E8.5 and E9.5; (3) ChIP-seq using a TWIST1-specific monoclonal antibody with chromatin extracts from TWIST1-expressing MDCK cells, a model for a TWIST1-dependent mesenchymal state.

Original language	English (US)
Pages (from-to)	372-375
Number of pages	4
Journal	Data in Brief
Volume	9
DOIs	https://doi.org/10.1016/j.dib.2016.09.001
State	Published - Dec 2016

Keywords

ChIP-seq
Cranial mesenchyme
Craniofacial
Embryo
Transcriptional target
Twist1

ASJC Scopus subject areas

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10.1016/j.dib.2016.09.001

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title = "Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest",

abstract = "This article contains data related to the research article entitled “Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance” by Bildsoe et al. (2016) [1]. The data presented here are derived from: (1) a microarray-based comparison of sorted cranial mesoderm (CM) and cranial neural crest (CNC) cells from E9.5 mouse embryos; (2) comparisons of transcription profiles of head tissues from mouse embryos with a CM-specific loss-of-function of Twist1 and control mouse embryos collected at E8.5 and E9.5; (3) ChIP-seq using a TWIST1-specific monoclonal antibody with chromatin extracts from TWIST1-expressing MDCK cells, a model for a TWIST1-dependent mesenchymal state.",

keywords = "ChIP-seq, Cranial mesenchyme, Craniofacial, Embryo, Transcriptional target, Twist1",

author = "Heidi Bildsoe and Xiaochen Fan and Wilkie, {Emilie E.} and Ator Ashoti and Jones, {Vanessa J.} and Melinda Power and Jing Qin and Junwen Wang and Tam, {Patrick P.L.} and Loebel, {David A.F.}",

note = "Publisher Copyright: {\textcopyright} 2016 The Authors",

year = "2016",

month = dec,

doi = "10.1016/j.dib.2016.09.001",

language = "English (US)",

volume = "9",

pages = "372--375",

journal = "Data in Brief",

issn = "2352-3409",

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T1 - Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

AU - Bildsoe, Heidi

AU - Fan, Xiaochen

AU - Wilkie, Emilie E.

AU - Ashoti, Ator

AU - Jones, Vanessa J.

AU - Power, Melinda

AU - Qin, Jing

AU - Wang, Junwen

AU - Tam, Patrick P.L.

AU - Loebel, David A.F.

PY - 2016/12

Y1 - 2016/12

N2 - This article contains data related to the research article entitled “Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance” by Bildsoe et al. (2016) [1]. The data presented here are derived from: (1) a microarray-based comparison of sorted cranial mesoderm (CM) and cranial neural crest (CNC) cells from E9.5 mouse embryos; (2) comparisons of transcription profiles of head tissues from mouse embryos with a CM-specific loss-of-function of Twist1 and control mouse embryos collected at E8.5 and E9.5; (3) ChIP-seq using a TWIST1-specific monoclonal antibody with chromatin extracts from TWIST1-expressing MDCK cells, a model for a TWIST1-dependent mesenchymal state.

AB - This article contains data related to the research article entitled “Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance” by Bildsoe et al. (2016) [1]. The data presented here are derived from: (1) a microarray-based comparison of sorted cranial mesoderm (CM) and cranial neural crest (CNC) cells from E9.5 mouse embryos; (2) comparisons of transcription profiles of head tissues from mouse embryos with a CM-specific loss-of-function of Twist1 and control mouse embryos collected at E8.5 and E9.5; (3) ChIP-seq using a TWIST1-specific monoclonal antibody with chromatin extracts from TWIST1-expressing MDCK cells, a model for a TWIST1-dependent mesenchymal state.

KW - ChIP-seq

KW - Cranial mesenchyme

KW - Craniofacial

KW - Embryo

KW - Transcriptional target

KW - Twist1

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VL - 9

SP - 372

EP - 375

JO - Data in Brief

JF - Data in Brief

ER -

Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

Abstract

Keywords

ASJC Scopus subject areas

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