Age-related changes in human crystalline determined from comparative analysis of post-translational modifications in young and aged lens

Does deamidation contribute to crystallin insolubility?

P. A. Wilmarth, S. Tanner, Surendra Dasari, S. R. Nagalla, M. A. Riviere, V. Bafha, P. A. Pevzner, L. L. David

Research output: Contribution to journalArticle

179 Citations (Scopus)

Abstract

We have employed recently developed blind modification search techniques to generate the most comprehensive map of post-translational modifications (PTMs) in human lens constructed to date. Three aged lenses, two of which had moderate cataract, and one young control lens were analyzed using multidimensional liquid chromatography mass spectrometry. In total, 491 modification sites in lens proteins were identified, There were 155 in vivo PTM sites in crystalline: 77 previously reported sites and 78 newly detected PTM sites. Several of these sites had modifications previously undetected by mass spectrometry in lens including carboxymethyl lysine (+58 Da), carboxyethyl lysine (+72 Da), and an arginine modification of +55 Da with yet unknown chemical structure. These new modifications were observed in all three aged lenses but were not found in the young lens. Several new sites of cysteine methylation were identified indicating this modification is more extensive in lens than previously thought. The results were used to estimate the extent of modification at specific sites by spectral counting. We tested the long-standing hypothesis that PTMs contribute to age-related loss of crystallin solubility by comparing spectral counts between the water-soluble and water-insoluble fractions of the aged lenses and found that the extent of deamidation was significantly increased in the water-insoluble fractions. On the basis of spectral counting, the most abundant PTMs in aged lenses were deamidations and methylated cysteines with other PTMs present at lower levels.

Original languageEnglish (US)
Pages (from-to)2554-2566
Number of pages13
JournalJournal of Proteome Research
Volume5
Issue number10
DOIs
StatePublished - Oct 2006
Externally publishedYes

Fingerprint

Crystallins
Post Translational Protein Processing
Lenses
Solubility
Crystalline materials
Mass spectrometry
Cysteine
Water
Mass Spectrometry
Methylation
Liquid chromatography
Liquid Chromatography
Cataract
Lysine
Arginine

Keywords

  • Aging
  • Cataract
  • Crystallin
  • Human lens
  • Mass spectrometry
  • Modification abundance
  • Post-translational modification
  • Proteomics
  • Spectral counting

ASJC Scopus subject areas

  • Genetics
  • Biotechnology
  • Biochemistry

Cite this

Age-related changes in human crystalline determined from comparative analysis of post-translational modifications in young and aged lens : Does deamidation contribute to crystallin insolubility? / Wilmarth, P. A.; Tanner, S.; Dasari, Surendra; Nagalla, S. R.; Riviere, M. A.; Bafha, V.; Pevzner, P. A.; David, L. L.

In: Journal of Proteome Research, Vol. 5, No. 10, 10.2006, p. 2554-2566.

Research output: Contribution to journalArticle

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