A web application towards semiotic-based evaluation of biomedical ontologies

Muhamamd Amith, Cui Tao

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

With the emerging importance of biomedical ontology re-search impacting Big Biomedical Data, there will be a need for knowl-edgebase evaluation that is both systematic and also engage a community of experts. This paper will introduce a prototype in production to evalu-ate the quality of formal ontologies through an online web tool, using the semiotic-inuenced metrics to grade ontology quality. Here we introduce the Semiotic-based Evaluation Management System (SEMS), which is designed for (1) automatic generation of various quality scores of an up-loaded ontology and recommendations for improvement for the ontology, and (2) a GUI for experts to conduct manual review and provide feed-back. In this paper, we will discuss the current status of the tool as well as the course for its continued development.

Original languageEnglish (US)
Title of host publicationCEUR Workshop Proceedings
PublisherCEUR-WS
Volume1428
StatePublished - 2015
Externally publishedYes
EventInternational Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs, BDM2I 2015 - co-located with the 14th International Semantic Web Conference, ISWC 2015 - Bethlehem, United States
Duration: Oct 11 2015 → …

Other

OtherInternational Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs, BDM2I 2015 - co-located with the 14th International Semantic Web Conference, ISWC 2015
CountryUnited States
CityBethlehem
Period10/11/15 → …

Fingerprint

Semiotics
Ontology
Graphical user interfaces
Feedback

Keywords

  • Big data
  • Knowledge engineering
  • Knowledge management
  • Ontology
  • Ontology evaluation
  • Semiotics

ASJC Scopus subject areas

  • Computer Science(all)

Cite this

Amith, M., & Tao, C. (2015). A web application towards semiotic-based evaluation of biomedical ontologies. In CEUR Workshop Proceedings (Vol. 1428). CEUR-WS.

A web application towards semiotic-based evaluation of biomedical ontologies. / Amith, Muhamamd; Tao, Cui.

CEUR Workshop Proceedings. Vol. 1428 CEUR-WS, 2015.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amith, M & Tao, C 2015, A web application towards semiotic-based evaluation of biomedical ontologies. in CEUR Workshop Proceedings. vol. 1428, CEUR-WS, International Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs, BDM2I 2015 - co-located with the 14th International Semantic Web Conference, ISWC 2015, Bethlehem, United States, 10/11/15.
Amith M, Tao C. A web application towards semiotic-based evaluation of biomedical ontologies. In CEUR Workshop Proceedings. Vol. 1428. CEUR-WS. 2015
Amith, Muhamamd ; Tao, Cui. / A web application towards semiotic-based evaluation of biomedical ontologies. CEUR Workshop Proceedings. Vol. 1428 CEUR-WS, 2015.
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