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• Using joint modelling to assess the association between a time-varying biomarker and a survival outcome: An illustrative example in respiratory medicine

  Chen, Y., Postmus, D., Cowie, M. R., Woehrle, H., Wegscheider, K., Simonds, A. K., Boezen, M., Somers, V. K., Teschler, H. & Eulenburg, C., Feb 1 2021, In: European Respiratory Journal. 57, 2, 2003206.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Using large clinical corpora for query expansion in text-based cohort identification

  Zhu, D., Wu, S., Carterette, B. & Liu, H., Jun 2014, In: Journal of Biomedical Informatics. 49, p. 275-281 7 p.

  Research output: Contribution to journal › Article › peer-review
  24 Scopus citations

• Using leucine zipper to facilitate α-synuclein assembly

  Jiang, P., Ko, L. W., Jansen, K. R., Golde, T. E. & Yen, S. H., Sep 2008, In: FASEB Journal. 22, 9, p. 3165-3174 10 p.

  Research output: Contribution to journal › Article › peer-review
  8 Scopus citations

• Using linkage and association to identify and model genetic effects: Summary of GAW15 group 4

  Yang, Q., Biernacka, J. M., Chen, M. H., Houwing-Duistermaat, J. J., Bergemann, T. L., Basu, S., Fan, R., Liu, L., Bourgey, M., Clerget-Darpoux, F., Lin, W. Y., Elston, R. C. & Cupples, L. A., 2007, In: Genetic epidemiology. 31, SUPPL. 1, p. S34-S42

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Using linked data for mining drug-drug interactions in electronic health records

  Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 682-686 5 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  21 Scopus citations

• Using log-linear models to test for associations among congenital malformations

  Beaty, T. H., Yang, P., Khoury, M. J., Harris, E. L. & Liang, K. Y., 1991, In: American journal of medical genetics. 39, 3, p. 299-306 8 p.

  Research output: Contribution to journal › Article › peer-review
  16 Scopus citations

• Using machine learning for concept extraction on clinical documents from multiple data sources

  Torii, M., Wagholikar, K. & Liu, H., Sep 2011, In: Journal of the American Medical Informatics Association. 18, 5, p. 580-587 8 p.

  Research output: Contribution to journal › Article › peer-review
  84 Scopus citations

• Using machine learning to improve the accuracy of patient deterioration predictions: Mayo Clinic Early Warning Score (MC-EWS)

  Romero-Brufau, S., Whitford, D., Johnson, M. G., Hickman, J., Morlan, B. W., Therneau, T., Naessens, J. & Huddleston, J. M., Jun 1 2021, In: Journal of the American Medical Informatics Association. 28, 6, p. 1207-1215 9 p.

  Research output: Contribution to journal › Article › peer-review

• Using magnetic resonance elastography to assess the dynamic mechanical properties of cartilage

  Lopez, O., Amrami, K., Rossman, P. & Ehman, R. L., Jul 5 2004, In: Proceedings of SPIE - The International Society for Optical Engineering. 5369, p. 51-61 11 p.

  Research output: Contribution to journal › Conference article › peer-review
  2 Scopus citations

• Using magnetic resonance microscopy to assess the osteogenesis in porous hydrogels

  Mishra, P., Dadsetan, M., Rajagopalan, S., Hefferan, T. E., Yaszemski, M. J. & Macura, S. I., Dec 1 2007, Magnetic Resonance in Material Science. p. 33-38 6 p. (Materials Research Society Symposium Proceedings; vol. 984).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Using mass spectrometry to monitor monoclonal immunoglobulins in patients with a monoclonal gammopathy

  Barnidge, D. R., Dasari, S., Botz, C. M., Murray, D. H., Snyder, M. R., Katzmann, J. A., Dispenzieri, A. & Murray, D. L., Mar 7 2014, In: Journal of Proteome Research. 13, 3, p. 1419-1427 9 p.

  Research output: Contribution to journal › Article › peer-review
  71 Scopus citations

• Using Mass Spectrometry to Quantify Rituximab and Perform Individualized Immunoglobulin Phenotyping in ANCA-Associated Vasculitis

  Mills, J. R., Cornec, D., Dasari, S., Ladwig, P. M., Hummel, A. M., Cheu, M., Murray, D. L., Willrich, M. A., Snyder, M. R., Hoffman, G. S., Kallenberg, C. G. M., Langford, C. A., Merkel, P. A., Monach, P. A., Seo, P., Spiera, R. F., St Clair, E. W., Stone, J. H., Specks, U. & Barnidge, D. R., Jun 21 2016, In: Analytical Chemistry. 88, 12, p. 6317-6325 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  15 Scopus citations

• Using mathematical modeling to predict survival of low-grade gliomas [1]

  Alvord, E. C. & Swanson, K. R., May 2007, In: Annals of neurology. 61, 5, 1 p.

  Research output: Contribution to journal › Letter › peer-review
  6 Scopus citations

• Using mechanical homogenization to isolate microglia from mouse brain tissue to preserve transcriptomic integrity

  Herron, S., Delpech, J. C., Madore, C. & Ikezu, T., Dec 16 2022, In: STAR Protocols. 3, 4, 101670.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Using mitral 'annulus reversus' to diagnose constrictive pericarditis

  Reuss, C. S., Wilansky, S. M., Lester, S. J., Lusk, J. L., Grill, D. E., Oh, J. K. & Tajik, A. J., May 2009, In: European Journal of Echocardiography. 10, 3, p. 372-375 4 p.

  Research output: Contribution to journal › Article › peer-review
  66 Scopus citations

• Using molecules to measure nuclear spin-dependent parity violation

  Demille, D., Cahn, S. B., Murphree, D., Rahmlow, D. A. & Kozlov, M. G., Jan 17 2008, In: Physical Review Letters. 100, 2, 023003.

  Research output: Contribution to journal › Article › peer-review
  140 Scopus citations

• Using mosaicing and visualwords

  André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B. & Ayache, N., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 1419-1422 4 p. 5490265. (2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  16 Scopus citations

• Using motion of the whole-body center of mass to assess the balance during gait of children with spastic cerebral palsy

  Cherng, R. J., Chou, L. S., Su, F. C., Shaughnessy, W. J. & Kaufman, K. R., Sep 1 2007, In: Journal of Medical and Biological Engineering. 27, 3, p. 150-155 6 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• Using motor learning guided theory and augmentative and alternative communication to improve speech production in profound apraxia: A case example

  Lasker, J. P., Stierwalt, J. A. G., Hageman, C. F. & La Pointe, L. L., Dec 1 2008, In: Journal of Medical Speech-Language Pathology. 16, 4, p. 225-231 7 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Using MR elastography to assess portal hypertension and response to beta-blockers in patients with cirrhosis

  Danielsen, K. V., Hove, J. D., Nabilou, P., Yin, M., Chen, J., Zhao, M., Kallemose, T., Teisner, A. S., Siebner, H. R., Ehman, R. L., Møller, S. & Bendtsen, F., Sep 2021, In: Liver International. 41, 9, p. 2149-2158 10 p.

  Research output: Contribution to journal › Article › peer-review

• Using MR Enterography and CT Enterography for Routine Crohn’s Surveillance: How We Do It Now, and How We Hope to Do it in the Future

  Kwapisz, L., Bruining, D. H. & Fletcher, J. G., Jan 2022, In: Korean Journal of Radiology. 23, 1, p. 1-5 5 p.

  Research output: Contribution to journal › Editorial › peer-review

• Using multiple anchor- and distribution-based estimates to evaluate clinically meaningful change on the functional assessment of cancer therapy-biologic response modifiers (FACT-BRM) instrument

  Yost, K. J., Sorensen, M. V., Hahn, E. A., Glendenning, G. A., Gnanasakthy, A. & Cella, D., 2005, In: Value in Health. 8, 2, p. 117-127 11 p.

  Research output: Contribution to journal › Article › peer-review
  62 Scopus citations

• Using multiple diffusion MRI measures to predict alzheimer’s disease with a TV-L1 prior

  The Alzheimer’S Disease Neuroimaging Initiative (ADNI), 2017, Computational Diffusion MRI - MICCAI Workshop. Fuster, A., Rathi, Y., Reisert, M., Kaden, E. & Ghosh, A. (eds.). Springer Heidelberg, p. 157-166 10 p. (Mathematics and Visualization).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Using Naïve Bayesian Analysis to Determine Imaging Characteristics of KRAS Mutations in Metastatic Colon Cancer

  Pershad, Y., Govindan, S., Hara, A. K., Borad, M. J., Bekaii-Saab, T., Wallace, A., Albadawi, H. & Oklu, R., Sep 2017, In: Diagnostics. 7, 3, 50.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Using natural language processing for identification of pneumonia cases from clinical records of patients with serologically proven influenza.

  Wahner-Roedler, D. L., Welsh, G. A., Trusko, B. E., Froehling, D. A., Temesgen, Z. & Elkin, P. L., 2008, In: AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Using Natural Language Processing of Free-Text Radiology Reports to Identify Type 1 Modic Endplate Changes

  Huhdanpaa, H. T., Tan, W. K., Rundell, S. D., Suri, P., Chokshi, F. H., Comstock, B. A., Heagerty, P. J., James, K. T., Avins, A. L., Nedeljkovic, S. S., Nerenz, D. R., Kallmes, D. F., Luetmer, P. H., Sherman, K. J., Organ, N. L., Griffith, B., Langlotz, C. P., Carrell, D., Hassanpour, S. & Jarvik, J. G., Feb 1 2018, In: Journal of Digital Imaging. 31, 1, p. 84-90 7 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Using network analysis to model the effects of the SARS Cov2 pandemic on acute patient care within a healthcare system

  Kohler, K., Jankowski, M. D., Bashford, T., Goyal, D. G., Habermann, E. B. & Walker, L. E., Dec 2022, In: Scientific reports. 12, 1, 10050.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Using nine degrees-of-freedom registration to correct for changes in voxel size in serial MRI studies

  Whitwell, J. L., Schott, J. M., Lewis, E. B., MacManus, D. G. & Fox, N. C., Sep 2004, In: Magnetic Resonance Imaging. 22, 7, p. 993-999 7 p.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Using N-of-1 trials in evidence-based clinical practice reply

  Montori, V. M. & Guyatt, G. H., Mar 11 2009, In: JAMA. 301, 10, p. 1023 1 p.

  Research output: Contribution to journal › Letter › peer-review
  3 Scopus citations

• Using Novel Agents and Stem Cell Transplantation to Optimally Manage Immunoglobulin Light Chain Amyloidosis

  Gertz, M. A., Aug 1 2015, In: Biology of Blood and Marrow Transplantation. 21, 8, p. 1339-1340 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  1 Scopus citations

• Using O*NET to estimate the association between work exposures and chronic diseases

  Dembe, A. E., Yao, X., Wickizer, T. M., Shoben, A. B. & Dong, X., Sep 2014, In: American Journal of Industrial Medicine. 57, 9, p. 1022-1031 10 p.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Using one's head to treat menopausal symptoms

  Barton, D. L. & Loprinzi, C. L., Nov 20 2012, In: Journal of Clinical Oncology. 30, 33, p. 4059-4060 2 p.

  Research output: Contribution to journal › Editorial › peer-review

• Using ontology fingerprints to disambiguate gene name entities in the biomedical literature

  Chen, G., Zhao, J., Cohen, T., Tao, C., Sun, J., Xu, H., Bernstam, E. V., Lawson, A., Zeng, J., Johnson, A. M., Holla, V., Bailey, A. M., Meric-Bernstam, F. & Zheng, W. J., 2014, CEUR Workshop Proceedings. CEUR-WS, Vol. 1327. p. 66 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature

  Chen, G., Zhao, J., Cohen, T., Tao, C., Sun, J., Xu, H., Bernstam, E. V., Lawson, A., Zeng, J., Johnson, A. M., Holla, V., Bailey, A. M., Lara-Guerra, H., Litzenburger, B., Meric-Bernstam, F. & Zheng, W. J., 2015, In: Database. 2015, bav034.

  Research output: Contribution to journal › Article › peer-review
  9 Scopus citations

• Using operative features to identify surgical complexity: A case in breast surgery practice

  Kilinc, D., Shahraki, N., Gel, E. S., Degnim, A. C., Hoskin, T., Sir, M. Y. & Pasupathy, K. S., Jul 2020, 42nd Annual International Conferences of the IEEE Engineering in Medicine and Biology Society: Enabling Innovative Technologies for Global Healthcare, EMBC 2020. Institute of Electrical and Electronics Engineers Inc., p. 6070-6073 4 p. 9176030. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2020-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  1 Scopus citations

• Using Pareto fronts to evaluate polyp detection algorithms for CT colonography

  Huang, A., Li, J., Summers, R. M., Petrick, N. & Hara, A. K., 2007, Medical Imaging 2007: Computer-Aided Diagnosis. PART 1 ed. 651407. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6514, no. PART 1).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  3 Scopus citations

• Using peptide nucleic acids as gene-expression modifiers to reduce β-amyloid levels

  McMahon, B. M., Stewart, J., Fauq, A., Younkin, S., Younkin, L. & Richelson, E., Jan 1 2002, In: Journal of Molecular Neuroscience. 19, 1-2, p. 71-76 6 p.

  Research output: Contribution to journal › Article › peer-review
  17 Scopus citations

• Using polygenic scores and clinical data for bipolar disorder patient stratification and lithium response prediction: machine learning approach

  Cearns, M., Amare, A. T., Schubert, K. O., Thalamuthu, A., Frank, J., Streit, F., Adli, M., Akula, N., Akiyama, K., Ardau, R., Arias, B., Aubry, J. M., Backlund, L., Bhattacharjee, A. K., Bellivier, F., Benabarre, A., Bengesser, S., Biernacka, J. M., Birner, A., Brichant-Petitjean, C., & 97 othersCervantes, P., Chen, H. C., Chillotti, C., Cichon, S., Cruceanu, C., Czerski, P. M., Dalkner, N., Dayer, A., Degenhardt, F., Zompo, M. D., Depaulo, J. R., Étain, B., Falkai, P., Forstner, A. J., Frisen, L., Frye, M. A., Fullerton, J. M., Gard, S., Garnham, J. S., Goes, F. S., Grigoroiu-Serbanescu, M., Grof, P., Hashimoto, R., Hauser, J., Heilbronner, U., Herms, S., Hoffmann, P., Hofmann, A., Hou, L., Hsu, Y. H., Jamain, S., Jiménez, E., Kahn, J. P., Kassem, L., Kuo, P. H., Kato, T., Kelsoe, J., Kittel-Schneider, S., Kliwicki, S., König, B., Kusumi, I., Laje, G., Landén, M., Lavebratt, C., Leboyer, M., Leckband, S. G., Maj, M., Manchia, M., Martinsson, L., McCarthy, M. J., McElroy, S., Colom, F., Mitjans, M., Mondimore, F. M., Monteleone, P., Nievergelt, C. M., Nöthen, M. M., Novák, T., O'Donovan, C., Ozaki, N., Millischer, V., Papiol, S., Pfennig, A., Pisanu, C., Potash, J. B., Reif, A., Reininghaus, E., Rouleau, G. A., Rybakowski, J. K., Schalling, M., Schofield, P. R., Schweizer, B. W., Severino, G., Shekhtman, T., Shilling, P. D., Shimoda, K., Simhandl, C., Slaney, C. M., Squassina, A., Stamm, T., Stopkova, P., Tekola-Ayele, F., Tortorella, A., Turecki, G., Veeh, J., Vieta, E., Witt, S. H., Roberts, G., Zandi, P. P., Alda, M., Bauer, M., McMahon, F. J., Mitchell, P. B., Schulze, T. G., Rietschel, M., Clark, S. R. & Baune, B. T., Apr 9 2022, In: British Journal of Psychiatry. 220, 4, p. 219-228 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Using prehospital electrocardiograms to improve door-to-balloon time for transferred patients with st-elevation myocardial infarction a case of extreme perf

  Pitta, S. R., Myers, L. A., Bjerke, C. M., White, R. D. & Ting, H. H., Jan 2010, In: Circulation: Cardiovascular Quality and Outcomes. 3, 1, p. 93-97 5 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Using Proton Beam Therapy in the Elderly Population: A Snapshot of Current Perception and Practice

  Thariat, J., Sio, T., Blanchard, P., Patel, S., Demizu, Y., Ampil, F., Guihard, S., Miller, R. C., Karlsson, U., Krengli, M., Giap, H. & Nguyen, N., Jul 15 2017, In: International Journal of Radiation Oncology Biology Physics. 98, 4, p. 840-842 3 p.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Using quality-improvement techniques to enhance patient education and counselling of diagnosis and management

  Varkey, P., Sathananthan, A., Scheifer, A., Bhagra, S., Fujiyoshi, A., Tom, A. & Murad, M. H., 2009, In: Quality in Primary Care. 17, 3, p. 205-213 9 p.

  Research output: Contribution to journal › Article › peer-review
  8 Scopus citations

• Using quantitative seroproteomics to identify antibody biomarkers in pancreatic cancer

  Jhaveri, D. T., Kim, M. S., Thompson, E. D., Huang, L., Sharma, R., Klein, A. P., Zheng, L., Le, D. T., Laheru, D. A., Pandey, A., Jaffee, E. M. & Anders, R. A., Mar 2016, In: Cancer Immunology Research. 4, 3, p. 225-233 9 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Using reconfigurable microfluidics to study the role of HGF in autocrine and paracrine signaling of hepatocytes

  Patel, D., Haque, A., Gao, Y. & Revzin, A., Jul 1 2015, In: Integrative Biology (United Kingdom). 7, 7, p. 815-824 10 p.

  Research output: Contribution to journal › Article › peer-review
  10 Scopus citations

• Using reinforcement learning for filter fusion in image enhancement

  Sahba, F., Tizhoosh, H. R. & Salama, M. M. A., 2005, Proceedings of the IASTED International Conference on Computational Intelligence. p. 262-266 5 p. (Proceedings of the IASTED International Conference on Computational Intelligence; vol. 2005).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Using reinforcement learning for image thresholding

  Shokri, M. & Tizhoosh, H. R., 2003, In: Canadian Conference on Electrical and Computer Engineering. 2, p. 1231-1234 4 p.

  Research output: Contribution to journal › Conference article › peer-review

• Using Research Metrics to Improve Timelines: Proceedings from the 2nd Annual CTSA Clinical Research Management Workshop

  Johnson, T., Joyner, M., DePourcq, F., Drezner, M., Hutchinson, R., Newton, K., Uscinski, K. T. & Toussant, K., Dec 2010, In: Clinical and translational science. 3, 6, p. 305-308 4 p.

  Research output: Contribution to journal › Article › peer-review
  6 Scopus citations

• Using research outcomes to develop evidence-based clinical recommendations

  Grover, L. L. & Grover, M., Jul 2008, In: Optometry. 79, 7, p. 355-359 5 p.

  Research output: Contribution to journal › Editorial › peer-review
  1 Scopus citations

• Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project.

  Pathak, J., Murphy, S. P., Willaert, B. N., Kremers, H. M., Yawn, B. P., Rocca, W. A. & Chute, C. G., 2011, In: AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2011, p. 1089-1098 10 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

  Pathak, J., Murphy, S. P., Willaert, B. N., Kremers, H. M., Chute, C. G., Yawn, B. P. & Rocca, W. A., Dec 1 2011, In: CEUR Workshop Proceedings. 833, p. 266-268 3 p.

  Research output: Contribution to journal › Conference article › peer-review

• Using secure messaging to update medications list in ambulatory care setting

  Raghu, T. S., Frey, K., Chang, Y. H., Cheng, M. R., Freimund, S. & Patel, A., Oct 1 2015, In: International Journal of Medical Informatics. 84, 10, p. 754-762 9 p.

  Research output: Contribution to journal › Article › peer-review
  9 Scopus citations