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• Transcriptional Differences between Normal and Glioma-Derived Glial Progenitor Cells Identify a Core Set of Dysregulated Genes

  Auvergne, R. M., Sim, F. J., Wang, S., Chandler-Militello, D., Burch, J., AlFanek, Y., Davis, D., Benraiss, A., Walter, K., Achanta, P., Johnson, M., Quinones-Hinojosa, A., Natesan, S., Ford, H. L. & Goldman, S. A., Mar 27 2013, In: Cell reports. 3, 6, p. 2127-2141 15 p.

  Research output: Contribution to journal › Article › peer-review
  47 Scopus citations

• Transcriptional dysregulation in a transgenic model of Parkinson disease

  Yacoubian, T. A., Cantuti-Castelvetri, I., Bouzou, B., Asteris, G., McLean, P. J., Hyman, B. T. & Standaert, D. G., Mar 2008, In: Neurobiology of Disease. 29, 3, p. 515-528 14 p.

  Research output: Contribution to journal › Article › peer-review
  56 Scopus citations

• Transcriptional element H4‐site II of cell cycle regulated human H4 histone genes is a multipartite protein/DNA interaction site for factors HiNF‐D, HiNF‐M, and HiNF‐P: Involvement of phosphorylation

  van Wijnen, A. J., Ramsey‐Ewing, A. L., Bortell, R., Owen, T. A., Lian, J. B., Stein, J. L. & Stein, G. S., Jun 1991, In: Journal of cellular biochemistry. 46, 2, p. 174-189 16 p.

  Research output: Contribution to journal › Article › peer-review
  51 Scopus citations

• Transcriptional fingerprint of human whole blood at the site of coronary occlusion in acute myocardial infarction

  Muller, O., Delrue, L., Hamilos, M., Vercauteren, S., Ntalianis, A., Trana, C., Mangiacapra, F., Dierickx, K., De Bruyne, B., Wijns, W., Behfar, A., Barbato, E., Terzic, A., Vanderheyden, M. & Bartunek, J., Aug 1 2011, In: EuroIntervention. 7, 4, p. 458-466 9 p.

  Research output: Contribution to journal › Article › peer-review
  8 Scopus citations

• Transcriptional fingerprints of antigen-presenting cell subsets in the human vaginal mucosa and skin reflect tissue-specific immune microenvironments

  Duluc, D., Banchereau, R., Gannevat, J., Thompson-Snipes, L., Blanck, J. P., Zurawski, S., Zurawski, G., Hong, S., Rossello-Urgell, J., Pascual, V., Baldwin, N., Stecher, J., Carley, M., Boreham, M. & Oh, S. K., 2014, In: Genome medicine. 6, 11, 98.

  Research output: Contribution to journal › Article › peer-review
  9 Scopus citations

• Transcriptional genomics associates FOX transcription factors with human heart failure

  Hannenhalli, S., Putt, M. E., Gilmore, J. M., Wang, J., Parmacek, M. S., Epstein, J. A., Morrisey, E. E., Margulies, K. B. & Cappola, T. P., Sep 2006, In: Circulation. 114, 12, p. 1269-1276 8 p.

  Research output: Contribution to journal › Article › peer-review
  134 Scopus citations

• Transcriptional Induction of Periostin by a Sulfatase 2-TGFb1-SMAD Signaling Axis Mediates Tumor Angiogenesis in Hepatocellular Carcinoma

  Chen, G., Nakamura, I., Dhanasekaran, R., Iguchi, E., Tolosa, E. J., Romecin, P. A., Vera, R. E., Almada, L. L., Miamen, A. G., Chaiteerakij, R., Zhou, M., Asiedu, M. K., Moser, C. D., Han, S., Hu, C., Banini, B. A., Oseini, A. M., Chen, Y., Fang, Y., Yang, D., & 10 othersShaleh, H. M., Wang, S., Wu, D., Song, T., Lee, J. S., Thorgeirsson, S. S., Chevet, E., Shah, V. H., Fernandez-Zapico, M. E. & Roberts, L. R., Feb 1 2017, In: Cancer research. 77, 3, p. 632-645 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  35 Scopus citations

• Transcriptional induction of the osteocalcin gene during osteoblast differentiation involves acetylation of histones H3 and H4

  Shen, J., Hovhannisyan, H., Lian, J. B., Montecino, M. A., Stein, G. S., Stein, J. L. & Van Wijnen, A. J., Apr 1 2003, In: Molecular Endocrinology. 17, 4, p. 743-756 14 p.

  Research output: Contribution to journal › Article › peer-review
  83 Scopus citations

• Transcriptional landscape of human microglia implicates age, sex, and APOE-related immunometabolic pathway perturbations

  Patel, T., Carnwath, T. P., Wang, X., Allen, M., Lincoln, S. J., Lewis-Tuffin, LJ., Quicksall, Z. S., Lin, S., Tutor-New, F. Q., Ho, C. C. G., Min, Y., Malphrus, K. G., Nguyen, T. T., Martin, E., Garcia, C. A., Alkharboosh, R. M., Grewal, S., Chaichana, K., Wharen, R., Guerrero-Cazares, H., & 2 othersQuinones-Hinojosa, A. & Ertekin-Taner, N., 2022, (Accepted/In press) In: Aging Cell.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional profiling by sequencing of oropharyngeal cancer

  Laborde, R. R., Wang, V. W., Smith, T. M., Olson, N. E., Olsen, S. M., García, J. J., Olsen, K. D., Moore, E. J., Kasperbauer, J. L., Tombers, N. M. & Smith, D. I., Mar 2012, In: Mayo Clinic proceedings. 87, 3, p. 226-232 7 p.

  Research output: Contribution to journal › Article › peer-review
  11 Scopus citations

• Transcriptional profiling develops molecular signatures for ovarian tumors

  Smith, D. I., Jan 1 2002, In: Cytometry. 47, 1, p. 60-62 3 p.

  Research output: Contribution to journal › Article › peer-review
  17 Scopus citations

• Transcriptional Profiling of Synovial Macrophages Using Minimally Invasive Ultrasound-Guided Synovial Biopsies in Rheumatoid Arthritis

  Mandelin, A. M., Homan, P. J., Shaffer, A. M., Cuda, C. M., Dominguez, S. T., Bacalao, E., Carns, M., Hinchcliff, M., Lee, J., Aren, K., Thakrar, A., Montgomery, A. B., Bridges, S. L., Bathon, J. M., Atkinson, J. P., Fox, D. A., Matteson, E. L., Buckley, C. D., Pitzalis, C., Parks, D., & 16 othersHughes, L. B., Geraldino-Pardilla, L., Ike, R., Phillips, K., Wright, K., Filer, A., Kelly, S., Ruderman, E. M., Morgan, V., Abdala-Valencia, H., Misharin, A. V., Budinger, G. S., Bartom, E. T., Pope, R. M., Perlman, H. & Winter, D. R., Jun 2018, In: Arthritis and Rheumatology. 70, 6, p. 841-854 14 p.

  Research output: Contribution to journal › Article › peer-review
  23 Scopus citations

• Transcriptional profiling of testosterone-regulated genes in the skeletal muscle of human immunodeficiency virus-infected men experiencing weight loss

  Montano, M., Flanagan, J. N., Jiang, L., Sebastiani, P., Rarick, M., Lebrasseur, N. K., Morris, C. A., Jasuja, R. & Bhasin, S., Jul 2007, In: Journal of Clinical Endocrinology and Metabolism. 92, 7, p. 2793-2802 10 p.

  Research output: Contribution to journal › Article › peer-review
  24 Scopus citations

• Transcriptional profiling reveals that several common fragile-site genes are downregulated in ovarian cancer

  Denison, S. R., Becker, N. A., Ferber, M. J., Phillips, L. A., Kalli, K. R., Lee, J., Lillie, J., Smith, D. I. & Shridhar, V., 2002, In: Genes Chromosomes and Cancer. 34, 4, p. 406-415 10 p.

  Research output: Contribution to journal › Article › peer-review
  11 Scopus citations

• Transcriptional regulation and its misregulation in Alzheimer's disease

  Chen, X. F., Zhang, Y. W., Xu, H. & Bu, G., 2013, In: Molecular brain. 6, 1, 44.

  Research output: Contribution to journal › Review article › peer-review
  27 Scopus citations

• Transcriptional regulation by NR5A2 links differentiation and inflammation in the pancreas

  Cobo, I., Martinelli, P., Flández, M., Bakiri, L., Zhang, M., Carrillo-De-Santa-Pau, E., Jia, J., Lobo, V. J. S. A., Megías, D., Felipe, I., Del Pozo, N., Millán, I., Thommesen, L., Bruland, T., Olson, S. H., Smith, J., Schoonjans, K., Bamlet, W. R., Petersen, G. M., Malats, N., & 3 othersAmundadottir, L. T., Wagner, E. F. & Real, F. X., Feb 22 2018, In: Nature. 554, 7693, p. 533-537 5 p.

  Research output: Contribution to journal › Article › peer-review
  42 Scopus citations

• Transcriptional regulation during myelopoiesis

  Lenny, N., Westendorf, J. J. & Hiebert, S. W., Aug 1997, In: Molecular Biology Reports. 24, 3, p. 157-168 12 p.

  Research output: Contribution to journal › Review article › peer-review
  61 Scopus citations

• Transcriptional regulation of Bim by FoxO3A mediates hepatocyte lipoapoptosis

  Barreyro, F. J., Kobayashi, S., Bronk, S. F., Werneburg, N. W., Malhi, H. & Gores, G. J., Sep 14 2007, In: Journal of Biological Chemistry. 282, 37, p. 27141-27154 14 p.

  Research output: Contribution to journal › Article › peer-review
  157 Scopus citations

• Transcriptional regulation of CXC-ELR chemokines KC and MIP-2 in mouse pancreatic acini

  Orlichenko, L. S., Behari, J., Yeh, T. H., Liu, S., Stolz, D. B., Saluja, A. K. & Singh, V. P., Oct 2010, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 299, 4, p. G867-G876

  Research output: Contribution to journal › Article › peer-review
  34 Scopus citations

• Transcriptional regulation of human FE65, a ligand of Alzheimer's disease amyloid precursor protein, by Sp1

  Yu, H. T., Chan, W. W. L., Chai, K. H., Lee, C. W. C., Chang, R. C. C., Yu, M. S., McLoughlin, D. M., Miller, C. C. J. & Lau, K. F., Mar 1 2010, In: Journal of cellular biochemistry. 109, 4, p. 782-793 12 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Transcriptional regulation of murine Slc22a1 (Oct1) by peroxisome proliferator agonist receptor-α and -γ

  Nie, W., Sweetser, S., Rinella, M. & Green, R. M., Feb 2005, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 288, 2 51-2, p. G207-G212

  Research output: Contribution to journal › Article › peer-review
  30 Scopus citations

• Transcriptional regulation of Smad2 is required for enhancement of TGFβ/Smad signaling by TGFβ inducible early gene

  Johnsen, S. A., Subramaniam, M., Katagiri, T., Janknecht, R. & Spelsberg, T. C., 2002, In: Journal of cellular biochemistry. 87, 2, p. 233-241 9 p.

  Research output: Contribution to journal › Article › peer-review
  66 Scopus citations

• Transcriptional regulation of the human FasL promoter-enhancer region

  Holtz-Heppelmann, C. J., Algeciras, A., Badley, A. D. & Paya, C. V., Feb 20 1998, In: Journal of Biological Chemistry. 273, 8, p. 4416-4423 8 p.

  Research output: Contribution to journal › Article › peer-review
  133 Scopus citations

• Transcriptional regulation of the Ikzf1 locus

  Yoshida, T., Landhuis, E., Dose, M., Hazan, I., Zhang, J., Naito, T., Jackson, A. F., Wu, J., Perotti, E. A., Kaufmann, C., Gounari, F., Morgan, B. A. & Georgopoulos, K., 2013, In: Blood. 122, 18, p. 3149-3159 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of the MUC1 mucin gene in colon carcinoma cells by a soluble factor. Identification of a regulatory element

  Shirotani, K., Taylor-Papadimitriou, J., Gendler, S. J. & Irimura, T., 1994, In: Journal of Biological Chemistry. 269, 21, p. 15030-15035 6 p.

  Research output: Contribution to journal › Article › peer-review
  27 Scopus citations

• Transcriptional regulation of the small nuclear ribonucleoprotein E protein gene. Identification of cis-acting sequences with homology to genes encoding ribosomal proteins

  Fautsch, M. P. & Wieben, E. D., 1991, In: Journal of Biological Chemistry. 266, 34, p. 23288-23295 8 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Transcriptional Regulation of the Steroid Receptor Genes

  Kumar, M. V. & Tindall, D. J., 1997, Progress in Nucleic Acid Research and Molecular Biology. C ed. p. 289-306 18 p. (Progress in Nucleic Acid Research and Molecular Biology; vol. 59, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  33 Scopus citations

• Transcriptional Regulation of the Xenopus laevis Bβ Fibrinogen Subunit Gene by Glucocorticoids and Hepatocyte Nuclear Factor 1: Analysis by Transfection into Primary Liver Cells

  Roberts, L. R., Nichols, L. A. & Holland, L. J., 1993, In: Biochemistry. 32, 43, p. 11627-11637 11 p.

  Research output: Contribution to journal › Article › peer-review
  12 Scopus citations

• Transcriptional repression by the HDAC4-RelB-p52 complex regulates multiple myeloma survival and growth

  Vallabhapurapu, S. D., Noothi, S. K., Pullum, D. A., Lawrie, C. H., Pallapati, R., Potluri, V., Kuntzen, C., Khan, S., Plas, D. R., Orlowski, R. Z., Chesi, M., Kuehl, W. M., Bergsagel, P. L., Karin, M. & Vallabhapurapu, S., Oct 12 2015, In: Nature communications. 6, 8428.

  Research output: Contribution to journal › Article › peer-review
  35 Scopus citations

• Transcriptional repression of ifn regulatory factor 7 by myc is critical for type i ifn production in human plasmacytoid dendritic cells

  Kim, T. W., Hong, S., Lin, Y., Murat, E., Joo, H., Kim, T., Pascual, V. & Liu, Y. J., Oct 15 2016, In: Journal of Immunology. 197, 8, p. 3348-3359 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  22 Scopus citations

• Transcriptional repression of the α1(I) collagen gene by ras is mediated in part by an intronic AP1 site

  Slack, J. L., Parker, M. I. & Bornstein, P., Jul 1995, In: Journal of cellular biochemistry. 58, 3, p. 380-392 13 p.

  Research output: Contribution to journal › Article › peer-review
  19 Scopus citations

• Transcriptional repression of WEE1 by Kruppel-like factor 2 is involved in DNA damage-induced apoptosis

  Wang, F., Zhu, Y., Huang, Y., McAvoy, S., Johnson, W. B., Cheung, T. H., Chung, T. K. H., Lo, K. W. K., Yim, S. F., Yu, M. M. Y., Ngan, H. Y. S., Wong, Y. F. & Smith, D. I., Jun 2 2005, In: Oncogene. 24, 24, p. 3875-3885 11 p.

  Research output: Contribution to journal › Article › peer-review
  66 Scopus citations

• Transcriptional repressors, corepressors and chromatin modifying enzymes in T cell development

  Shapiro, M. J. & Shapiro, V. S., Mar 2011, In: Cytokine. 53, 3, p. 271-281 11 p.

  Research output: Contribution to journal › Review article › peer-review
  3 Scopus citations

• Transcriptional signatures associated with rubella virus-specific humoral immunity after a third dose of MMR vaccine in women of childbearing age

  Haralambieva, I. H., Eberhard, K. G., Ovsyannikova, I. G., Grill, D. E., Schaid, D. J., Kennedy, R. B. & Poland, G. A., Jul 2021, In: European Journal of Immunology. 51, 7, p. 1824-1838 15 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional signatures of influenza A/H1N1-specific IgG memory-like B cell response in older individuals

  Haralambieva, I. H., Ovsyannikova, I. G., Kennedy, R. B., Zimmermann, M. T., Grill, D. E., Oberg, A. L. & Poland, G. A., Jul 25 2016, In: Vaccine. 34, 34, p. 3993-4002 10 p.

  Research output: Contribution to journal › Article › peer-review
  23 Scopus citations

• Transcriptional silencing of zinc finger protein 185 identified by expression profiling is associated with prostate cancer progression

  Vanaja, D. K., Cheville, J. C., Iturria, S. J. & Young, C. Y. F., Jul 15 2003, In: Cancer research. 63, 14, p. 3877-3882 6 p.

  Research output: Contribution to journal › Article › peer-review
  240 Scopus citations

• Transcriptional specialization of human dendritic cell subsets in response to microbial vaccines

  Banchereau, R., Baldwin, N., Cepika, A. M., Athale, S., Xue, Y., Yu, C. I., Metang, P., Cheruku, A., Berthier, I., Gayet, I., Wang, Y., Ohouo, M., Snipes, L. A., Xu, H., Obermoser, G., Blankenship, D., Oh, S., Ramilo, O., Chaussabel, D., Banchereau, J., & 2 othersPalucka, K. & Pascual, V., Oct 22 2014, In: Nature communications. 5, 5283.

  Research output: Contribution to journal › Article › peer-review
  35 Scopus citations

• Transcriptional suppression of mir-29b-1/mir-29a promoter by c-Myc, hedgehog, and NF-kappaB

  Mott, J. L., Kurita, S., Cazanave, S. C., Bronk, S. F., Werneburg, N. W. & Fernandez-Zapico, M. E., Aug 1 2010, In: Journal of cellular biochemistry. 110, 5, p. 1155-1164 10 p.

  Research output: Contribution to journal › Article › peer-review
  213 Scopus citations

• Transcriptional targets of hepatocyte growth factor signaling and Ki-ras oncogene activation in colorectal cancer

  Seiden-Long, I. M., Brown, K. R., Shih, W., Wigle, D. A., Radulovich, N., Jurisica, I. & Tsao, M. S., Jan 5 2006, In: Oncogene. 25, 1, p. 91-102 12 p.

  Research output: Contribution to journal › Article › peer-review
  60 Scopus citations

• Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance

  Bildsoe, H., Fan, X., Wilkie, E. E., Ashoti, A., Jones, V. J., Power, M., Qin, J., Wang, J., Tam, P. P. L. & Loebel, D. A. F., Oct 1 2016, In: Developmental Biology. 418, 1, p. 189-203 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  12 Scopus citations

• Transcription and histone modifications in the recombination-free region spanning a rice centromere

  Yan, H., Jin, W., Nagaki, K., Tian, S., Ouyang, S., Buell, C. R., Talbert, P. B., Henikoff, S. & Jiang, J., 2005, In: Plant Cell. 17, 12, p. 3227-3238 12 p.

  Research output: Contribution to journal › Article › peer-review
  92 Scopus citations

• Transcription-associated histone pruning demarcates macroH2A chromatin domains

  Sun, Z., Filipescu, D., Andrade, J., Gaspar-Maia, A., Ueberheide, B. & Bernstein, E., Oct 1 2018, In: Nature Structural and Molecular Biology. 25, 10, p. 958-970 13 p.

  Research output: Contribution to journal › Article › peer-review
  11 Scopus citations

• Transcription elongation factor AFF2/FMR2 regulates expression of expanded GGGGCC repeat-containing C9ORF72 allele in ALS/FTD

  Yuva-Aydemir, Y., Almeida, S., Krishnan, G., Gendron, T. F. & Gao, F. B., Dec 1 2019, In: Nature communications. 10, 1, 5466.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  16 Scopus citations

• Transcription factor 7-like 2 (TCF7L2) gene polymorphism and progression from single to multiple autoantibody positivity in individuals at risk for type 1 diabetes

  Type 1 Diabetes TrialNet Study Group, Dec 1 2018, In: Diabetes care. 41, 12, p. 2480-2486 7 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Transcription factor 7-like 2 regulates β-cell survival and function in human pancreatic islets

  Shu, L., Sauter, N. S., Schulthess, F. T., Matveyenko, A. V., Oberholzer, J. & Maedler, K., Mar 2008, In: Diabetes. 57, 3, p. 645-653 9 p.

  Research output: Contribution to journal › Article › peer-review
  208 Scopus citations

• Transcription factor ATF4 directs basal and stress-induced gene expression in the unfolded protein response and cholesterol metabolism in the liver

  Fusakio, M. E., Willy, J. A., Wang, Y., Mirek, E. T., Baghdadi, R. J. T. A., Adams, C. M., Anthony, T. G. & Wek, R. C., May 1 2016, In: Molecular biology of the cell. 27, 9, p. 1536-1551 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor B cell lineage-specific activator protein regulates the gene for human X-box binding protein 1

  Reimold, A. M., Ponath, P. D., Li, Y. S., Hardy, R. R., David, C. S., Strominger, J. L. & Glimcher, L. H., Feb 1 1996, In: Journal of Experimental Medicine. 183, 2, p. 393-401 9 p.

  Research output: Contribution to journal › Article › peer-review
  147 Scopus citations

• Transcription factor EBF restricts alternative lineage options and promotes B cell fate commitment independently of Pax5

  Pongubala, J. M. R., Northrup, D. L., Lancki, D. W., Medina, K. L., Treiber, T., Bertolino, E., Thomas, M., Grosschedl, R., Allman, D. & Singh, H., Feb 2008, In: Nature immunology. 9, 2, p. 203-215 13 p.

  Research output: Contribution to journal › Article › peer-review
  183 Scopus citations

• Transcription Factor Foxo1 Represses T-bet-Mediated Effector Functions and Promotes Memory CD8 ⁺ T Cell Differentiation

  Rao, R. R., Li, Q., Bupp, M. R. G. & Shrikant, P. A., Mar 23 2012, In: Immunity. 36, 3, p. 374-387 14 p.

  Research output: Contribution to journal › Article › peer-review
  169 Scopus citations

• Transcription-factor-mediated epigenetic control of cell fate and lineage commitment

  Stein, G. S., Zaidi, S. K., Stein, J. L., Lian, J. B., Van Wijnen, A. J., Montecino, M., Young, D. W., Javed, A., Pratap, J., Choi, J. Y., Ali, S. A., Pande, S. & Hassan, M. Q., Feb 2009, In: Biochemistry and Cell Biology. 87, 1, p. 1-6 6 p.

  Research output: Contribution to journal › Review article › peer-review
  19 Scopus citations