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• 2021

  Description of Pharmacogenomic Testing Among Patients Admitted to the Intensive Care Unit After Cardiovascular Surgery

  Peterson, P. E., Nicholson, W. T., Moyer, A. M., Arendt, C. J., Smischney, N. J., Seelhammer, T. G., Krecke, C. A., Haney, R. M., Yaw, E. J. & Chlan, L. L., Oct 2021, In: Journal of Intensive Care Medicine. 36, 11, p. 1281-1285 5 p.

  Research output: Contribution to journal › Article › peer-review

• Descriptive Epidemiology From the Research in Osteochondritis Dissecans of the Knee (ROCK) Prospective Cohort

  Nissen, C. W., Albright, J. C., Anderson, C. N., Busch, M. T., Carlson, C., Carsen, S., Chambers, H. G., Edmonds, E. W., Ellermann, J. M., Ellis, H. B., Erickson, J. B., Fabricant, P. D., Ganley, T. J., Green, D. W., Grimm, N. L., Heyworth, B. E., Po, J. H. H., Kocher, M. S., Kostyun, R. O., Krych, A. J. & 26 others, Latz, K. H., Loveland, D. M., Lyon, R. M., Mayer, S. W., Meenen, N. M., Milewski, M. D., Myer, G. D., Nelson, B. J., Nepple, J. J., Nguyen, J. C., Pace, J. L., Paterno, M. V., Pennock, A. T., Perkins, C. A., Polousky, J. D., Saluan, P., Shea, K. G., Shearier, E., Tompkins, M. A., Wall, E. J., Weiss, J. M., Willimon, S. C., Wilson, P. L., Wright, R. W., Zbojniewicz, A. M. & Carey, J. L., 2021, (Accepted/In press) In: American Journal of Sports Medicine.

  Research output: Contribution to journal › Article › peer-review

• Design and Implementation of a Skilled Nursing Facility COVID-19 Unit

  Verdoorn, B. P., Bartley, M. M., Baumbach, L. J., Chandra, A., McKenzie, K. M., De la Garza, M. M., Sanchez Pellecer, D. E., Small, T. C. & Hanson, G. J., May 2021, In: Journal of the American Medical Directors Association. 22, 5, p. 971-973.e1

  Research output: Contribution to journal › Article › peer-review

• Design and Rationale of the Global Phase 3 NEURO-TTRansform Study of Antisense Oligonucleotide AKCEA-TTR-L_Rx (ION-682884-CS3) in Hereditary Transthyretin-Mediated Amyloid Polyneuropathy

  Coelho, T., Ando, Y., Benson, M. D., Berk, J. L., Waddington-Cruz, M., Dyck, P. J., Gillmore, J. D., Khella, S. L., Litchy, W. J., Obici, L., Monteiro, C., Tai, L. J., Viney, N. J., Buchele, G., Brambatti, M., Jung, S. W., St. L. O’Dea, L., Tsimikas, S., Schneider, E., Geary, R. S. & 2 others, Monia, B. P. & Gertz, M., Jun 2021, In: Neurology and Therapy. 10, 1, p. 375-389 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Design and validation of a patient-reported outcome measure scale in acute pancreatitis: The PAN-PROMISE study

  De-Madaria, E., Sánchez-Marin, C., Carrillo, I., Vege, S. S., Chooklin, S., Bilyak, A., Mejuto, R., Mauriz, V., Hegyi, P., Márta, K., Kamal, A., Lauret-Braña, E., Barbu, S. T., Nunes, V., Ruiz-Rebollo, M. L., Garciá-Rayado, G., Lozada-Hernandez, E. E., Pereira, J., Negoi, I., Espina, S. & 7 others, Hollenbach, M., Litvin, A., Bolado-Concejo, F., Vargas, R. D., Pascual-Moreno, I., Singh, V. K. & Mira, J. J., Jan 1 2021, In: Gut. 70, 1, p. 139-147 9 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• Design considerations for workflow management systems use in production genomics research and the clinic

  Ahmed, A. E., Allen, J. M., Bhat, T., Burra, P., Fliege, C. E., Hart, S. N., Heldenbrand, J. R., Hudson, M. E., Istanto, D. D., Kalmbach, M. T., Kapraun, G. D., Kendig, K. I., Kendzior, M. C., Klee, E. W., Mattson, N., Ross, C. A., Sharif, S. M., Venkatakrishnan, R., Fadlelmola, F. M. & Mainzer, L. S., Dec 2021, In: Scientific reports. 11, 1, 21680.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Designed architectural proteins that tune DNA looping in bacteria

  Tse, D. H., Becker, N. A., Young, R. T., Olson, W. K., Peters, J. P., Schwab, T. L., Clark, K. J. & Maher, L. J., Oct 11 2021, In: Nucleic acids research. 49, 18, p. 10382-10396 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Desirability of Outcome Ranking for the Management of Antimicrobial Therapy (DOOR MAT) Reveals Improvements in the Treatment of Bloodstream Infections Caused by Escherichia coli and Klebsiella pneumoniae in Patients from the Veterans Health Administration

  Perez, F., Colindres, R. V., Wilson, B. M., Saade, E., Jump, R. L. P., Banerjee, R., Patel, R., Evans, S. R. & Bonomo, R. A., Oct 5 2021, In: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 73, 7, p. 1231-1238 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Destruction of DNA-Binding Proteins by Programmable Oligonucleotide PROTAC (O'PROTAC): Effective Targeting of LEF1 and ERG

  Shao, J., Yan, Y., Ding, D., Wang, D., He, Y., Pan, Y., Yan, W., Kharbanda, A., Li, H. Y. & Huang, H., Oct 20 2021, In: Advanced Science. 8, 20, 2102555.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Detailed Reanalysis of 500 Breast Cancers with Equivocal HER2 Immunohistochemistry and Borderline ERBB2 Fluorescence in Situ Hybridization Results

  Geiersbach, K. B., Sill, D. R., Del Rosario, K. M., Meyer, R. G., Spears, G. M., Yuhas, J. A., Sukov, W. R., Jenkins, R. B., Ocal, I. T., Mounajjed, T. & Chen, B., Nov 1 2021, In: American journal of clinical pathology. 156, 5, p. 886-894 9 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of a Cryptic EP300/ZNF384 Gene Fusion by Chromosomal Microarray and Next-Generation Sequencing Studies in a Pediatric Patient with B-Lymphoblastic Leukemia

  Berg, H. E., Blackburn, P. R., Smadbeck, J. B., Swanson, K. E., Rice, C. S., Webley, M. R., Johnson, S. H., Vasmatzis, G., Xu, X., Greipp, P. T., Hoppman, N. L., Ketterling, R. P., Baughn, L. B., Boston, C. H., Sutton, L. M. & Peterson, J. F., May 1 2021, In: Laboratory Medicine. 52, 3, p. 297-302 6 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of a mosaic CDKL5 deletion and inversion by optical genome mapping ends an exhaustive diagnostic odyssey

  Undiagnosed Diseases Network, Jul 2021, In: Molecular Genetics and Genomic Medicine. 9, 7, e1665.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Detection of Asymptomatic Radiation Induced Optic Neuropathy with Optical Coherence Tomography

  Grosinger, A., Chen, J. J., Link, M. J. & Bhatti, M. T., 2021, In: Neuro-Ophthalmology. 45, 5, p. 339-342 4 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of bleeding complications after renal transplant biopsy

  Patel, A. G., Kriegshauser, J. S., Young, S. W., Dahiya, N. & Patel, M. D., Feb 2021, In: American Journal of Roentgenology. 216, 2, p. 428-435 8 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of Circulating RNA Using Nanopore Sequencing

  Lindemann, J., Yan, I. K. & Patel, T., 2021, Methods in Molecular Biology. Humana Press Inc., p. 273-284 12 p. (Methods in Molecular Biology; vol. 2348).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Detection of hypertrophic cardiomyopathy by an artificial intelligence electrocardiogram in children and adolescents

  Siontis, K. C., Liu, K., Bos, J. M., Attia, Z. I., Cohen-Shelly, M., Arruda-Olson, A. M., Zanjirani Farahani, N., Friedman, P. A., Noseworthy, P. A. & Ackerman, M. J., Oct 1 2021, In: International Journal of Cardiology. 340, p. 42-47 6 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of Pathogenic Bacteria From Septic Patients Using 16S Ribosomal RNA Gene-Targeted Metagenomic Sequencing

  Fida, M., Wolf, M. J., Hamdi, A., Vijayvargiya, P., Esquer Garrigos, Z., Khalil, S., Greenwood-Quaintance, K. E., Thoendel, M. J. & Patel, R., Oct 5 2021, In: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 73, 7, p. 1165-1172 8 p.

  Research output: Contribution to journal › Article › peer-review

• Detection of Postcolonoscopy Colorectal Neoplasia by Multi-target Stool DNA

  Ebner, D. W., Eckmann, J. D., Burger, K. N., Mahoney, D. W., Bering, J., Kahn, A., Rodriguez, E. A., Prichard, D. O., Wallace, M. B., Kane, S. V., Finney Rutten, L. J., Gurudu, S. R. & Kisiel, J. B., Jun 18 2021, In: Clinical and translational gastroenterology. 12, 6, p. e00375

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Detection of tick-borne bacteria from whole blood using 16S ribosomal RNA gene PCR followed by next-generation sequencing

  Rodino, K. G., Wolf, M. J., Sheldon, S., Kingry, L. C., Petersen, J. M., Patel, R. & Pritt, B. S., May 2021, In: Journal of clinical microbiology. 59, 5, e03129-20.

  Research output: Contribution to journal › Article › peer-review

• Determinants and consequences of heart rate and stroke volume response to exercise in patients with heart failure and preserved ejection fraction

  Wolsk, E., Kaye, D. M., Komtebedde, J., Shah, S. J., Borlaug, B. A., Burkhoff, D., Kitzman, D. W., Cleland, J. G., Hasenfuß, G., Hassager, C., Møller, J. E. & Gustafsson, F., May 2021, In: European Journal of Heart Failure. 23, 5, p. 754-764 11 p.

  Research output: Contribution to journal › Article › peer-review

• Determinants of morbidity and mortality associated with isolated tricuspid valve surgery

  Kawsara, A., Alqahtani, F., Nkomo, V. T., Eleid, M. F., Pislaru, S. V., Rihal, C. S., Nishimura, R. A., Schaff, H. V., Crestanello, J. A. & Alkhouli, M., 2021, In: Journal of the American Heart Association. 10, 2, p. 1-18 18 p., e018417.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Determinants of pain interference and headache impact in patients who have chronic migraine with medication overuse: Results from the MOTS trial

  on behalf of the MOTS Investigators, Sep 2021, In: Cephalalgia. 41, 10, p. 1053-1064 12 p.

  Research output: Contribution to journal › Article › peer-review

• Determination of posterolateral oropharyngeal wall thickness and the potential implications for transoral surgical margins in tonsil cancer

  Tomblinson, C. M., Fletcher, G. P., Hu, L. S., Mi, L., Howard, B. E., Nagel, T. H., Hinni, M. L. & Hoxworth, J. M., Jul 2021, In: Head and Neck. 43, 7, p. 2185-2192 8 p.

  Research output: Contribution to journal › Article › peer-review

• Determining age and sex-specific distribution of pancreatic whole-gland CT attenuation using artificial intelligence aided image segmentation: Associations with body composition and pancreatic cancer risk

  Janssens, L. P., Weston, A. D., Singh, D., Spears, G., Harmsen, W. S., Takahashi, N., Philbrick, K. A., Erickson, B. J., Abu Dayyeh, B. K., Chari, S. T., Chandrasekhara, V., Gleeson, F. C., Levy, M. J., Pearson, R. K., Petersen, B. T., Vege, S. S. & Majumder, S., Dec 2021, In: Pancreatology. 21, 8, p. 1524-1530 7 p.

  Research output: Contribution to journal › Article › peer-review

• Determining mutational burden and signature using RNA-seq from tumor-only samples

  Jessen, E., Liu, Y., Davila, J., Kocher, J. P. & Wang, C., Dec 2021, In: BMC medical genomics. 14, 1, 65.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Detrusor overactivity assessment using ultrasound bladder vibrometry

  Rosen, D. P., Husmann, D. A., Mynderse, L. A., Kelly, T. F., Alizad, A. & Fatemi, M., Oct 2021, In: Physiological Measurement. 42, 10, 105012.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Developing a model for estimating the activity of colonic microbes after intestinal surgeries

  Marcus, A., Davis, T. L., Rittmann, B. E., DiBaise, J. K., Carnero, E. A., Corbin, K., Smith, S. R. & Krajmalnik-Brown, R., Jul 2021, In: PloS one. 16, 7 July, e0253542.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Developing and Establishing Biomechanical Variables as Risk Biomarkers for Preventable Gait-Related Falls and Assessment of Intervention Effectiveness

  Grabiner, M. D. & Kaufman, K. R., Sep 22 2021, In: Frontiers in Sports and Active Living. 3, 722363.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Developing an Index of Medical Conditions Associated with Outcomes after Moderate-to-Severe Traumatic Brain Injury

  Whiteneck, G. G., Ketchum, J. M., Almeida, E. J., Goldstein, R., Brown, A. W., Corrigan, J. D., Hammond, F. M., Weintraub, A. H. & Tefertiller, C., Mar 2021, In: Journal of neurotrauma. 38, 5, p. 593-603 11 p.

  Research output: Contribution to journal › Article › peer-review

• Developing an IV Ketamine Clinic for Treatment-Resistant Depression: a Primer

  Parikh, S. V., Lopez, D., Vande Voort, J. L., Rico, J., Achtyes, E., Coryell, W., Goddard, A., Goes, F., Greden, J. F., Singh, B., Kaplin, A., Frye, M. A., Maixner, D., Watson, B., Drake, K., Tarnal, V., Riva-Posse, P., Bobo, W. V. & Bio-K Study Team, S. T., Jun 1 2021, In: Psychopharmacology bulletin. 51, 3, p. 109-124 16 p.

  Research output: Contribution to journal › Review article › peer-review

• Developing a Novel Framework for an Undergraduate Cancer Research Education and Engagement Program for Underrepresented Minority Students: the Florida-California CaRE² Research Education Core (REC) Training Program

  Mochona, B., Lyon, D., Offringa, I. A., Redda, K. K., Reams, R. R., Odedina, F., Wilkie, D. J., Stern, M. C. & Carpten, J. D., Oct 2021, In: Journal of Cancer Education. 36, 5, p. 914-919 6 p.

  Research output: Contribution to journal › Article › peer-review

• Developing a RadLex-based named entity recognition tool for mining textual radiology reports:development and performance evaluation study

  Tsuji, S., Wen, A., Takahashi, N., Zhang, H., Ogasawara, K. & Jiang, G., Oct 2021, In: Journal of medical Internet research. 23, 10, e25378.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Developing a Social Media Intervention to Connect Alaska Native People Who Smoke with Resources and Support to Quit Smoking: The Connecting Alaska Native Quit Study

  Merculieff, Z. T., Koller, K. R., Sinicrope, P. S., Hughes, C. A., Bock, M. J., Decker, P. A., Resnicow, K., Flanagan, C. A., Meade, C. D., McConnell, C. R., Prochaska, J. J., Thomas, T. K. & Patten, C. A., Jun 1 2021, In: Nicotine and Tobacco Research. 23, 6, p. 1002-1009 8 p.

  Research output: Contribution to journal › Article › peer-review

• Developing image analysis pipelines of whole-slide images: Pre- And post-processing

  Smith, B., Hermsen, M., Lesser, E., Ravichandar, D. & Kremers, W., 2021, (Accepted/In press) In: Journal of Clinical and Translational Science.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Developing methods to detect and diagnose chronic traumatic encephalopathy during life: rationale, design, and methodology for the DIAGNOSE CTE Research Project

  for the DIAGNOSE CTE Research Project Investigators, Dec 2021, In: Alzheimer's Research and Therapy. 13, 1, 136.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Developing the ATX(N) classification for use across the Alzheimer disease continuum

  Hampel, H., Cummings, J., Blennow, K., Gao, P., Jack, C. R. & Vergallo, A., Sep 2021, In: Nature Reviews Neurology. 17, 9, p. 580-589 10 p.

  Research output: Contribution to journal › Review article › peer-review

• Developing univariate neurodegeneration biomarkers with low-rank and sparse subspace decomposition

  for the Alzheimer's Disease Neuroimaging Initiative, Jan 2021, In: Medical Image Analysis. 67, 101877.

  Research output: Contribution to journal › Article › peer-review

• Developmental partitioning of SYK and ZAP70 prevents autoimmunity and cancer

  Sadras, T., Martin, M., Kume, K., Robinson, M. E., Saravanakumar, S., Lenz, G., Chen, Z., Song, J. Y., Siddiqi, T., Oksa, L., Knapp, A. M., Cutler, J., Cosgun, K. N., Klemm, L., Ecker, V., Winchester, J., Ghergus, D., Soulas-Sprauel, P., Kiefer, F., Heisterkamp, N. & 10 others, Pandey, A., Ngo, V., Wang, L., Jumaa, H., Buchner, M., Ruland, J., Chan, W. C., Meffre, E., Martin, T. & Müschen, M., May 20 2021, In: Molecular Cell. 81, 10, p. 2094-2111.e9

  Research output: Contribution to journal › Article › peer-review

• Development and application of novel immunoassays for eosinophil granule major basic proteins to evaluate eosinophilia and myeloproliferative disorders

  Squillace, D. L., Checkel, J. L., Tefferi, A., Kita, H. & Gleich, G. J., Jun 2021, In: Journal of Immunological Methods. 493, 113015.

  Research output: Contribution to journal › Article › peer-review

• Development and characterization of novel endoxifen-resistant breast cancer cell lines highlight numerous differences from tamoxifen-resistant models

  Jones, C. J., Subramaniam, M., Emch, M. J., Bruinsma, E. S., Ingle, J. N., Goetz, M. P. & Hawse, J. R., Jun 2021, In: Molecular Cancer Research. 19, 6, p. 1026-1039 14 p.

  Research output: Contribution to journal › Article › peer-review

• Development and evaluation of deep learning–based segmentation of histologic structures in the kidney cortex with multiple histologic stains

  The Nephrotic Syndrome Study Network (NEPTUNE), Jan 2021, In: Kidney international. 99, 1, p. 86-101 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• Development and initial validation of a deep learning algorithm to quantify histological features in colorectal carcinoma including tumour budding/poorly differentiated clusters

  Pai, R. K., Hartman, D., Schaeffer, D. F., Rosty, C., Shivji, S., Kirsch, R. & Pai, R. K., Sep 2021, In: Histopathology. 79, 3, p. 391-405 15 p.

  Research output: Contribution to journal › Article › peer-review

• Development and morphologic aspects of the cardiac conduction system in normal hearts and congenital heart defects

  Sugrue, A., Shadrin, I. Y. & Asirvatham, S. J., Dec 31 2021, Catheter Ablation of Cardiac Arrhythmias in Children and Patients with Congenital Heart Disease. CRC Press, p. 2-16 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Development and Pilot Testing of Decision Aid for Shared Decision Making in Barrett's Esophagus with Low-Grade Dysplasia

  Krishnamoorthi, R., Hargraves, I., Gopalakrishnan, N., Blevins, C. H., Priyan, H., Johnson, M. L., Maixner, K. A., Wang, K. K., Katzka, D. A., Talwalkar, J. A., Leblanc, A. & Iyer, P. G., Jan 2021, In: Journal of clinical gastroenterology. 55, 1, p. 36-42 7 p.

  Research output: Contribution to journal › Article › peer-review

• Development and Use of Natural Language Processing for Identification of Distant Cancer Recurrence and Sites of Distant Recurrence Using Unstructured Electronic Health Record Data

  Karimi, Y. H., Blayney, D. W., Kurian, A. W., Shen, J., Yamashita, R., Rubin, D. & Banerjee, I., Apr 1 2021, In: JCO Clinical Cancer Informatics. 5, p. 469-478 10 p.

  Research output: Contribution to journal › Article › peer-review

• Development and validation of a modified full age spectrum creatinine-based equation to estimate glomerular filtration rate

  Pottel, H., Björk, J., Courbebaisse, M., Couzi, L., Ebert, N., Eriksen, B. O., Dalton, R. N., Dubourg, L., Gaillard, F., Garrouste, C., Grubb, A., Jacquemont, L., Hansson, M., Kamar, N., Lamb, E. J., Legendre, C., Littmann, K., Mariat, C., Melsom, T., Rostaing, L. & 12 others, Rule, A. D., Schaeffner, E., Sundin, P. O., Turner, S., Bökenkamp, A., Berg, U., Åsling-Monemi, K., Selistre, L., Åkesson, A., Larsson, A., Nyman, U. & Delanaye, P., Feb 1 2021, In: Annals of internal medicine. 174, 2, p. 183-191 9 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Development and Validation of a Novel TP53 Mutation Signature That Predicts Risk of Metastasis in Primary Prostate Cancer

  Chipidza, F. E., Alshalalfa, M., Mahal, B. A., Karnes, R. J., Liu, Y., Davicioni, E., Martin, N. E., Mouw, K. W., Feng, F. Y., Nguyen, P. L. & Muralidhar, V., Jun 2021, In: Clinical Genitourinary Cancer. 19, 3, p. 246-254.e5

  Research output: Contribution to journal › Article › peer-review

• Development and validation of a rapidly deployable CT-guided stereotactic system for external ventricular drainage: preclinical study

  Barath, A. S., Rusheen, A. E., Cabrera, J. M. R., Shin, H., Blaha, C. D., Bennet, K. E., Goerss, S. J., Lee, K. H. & Oh, Y., Dec 2021, In: Scientific reports. 11, 1, 17492.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Development and Validation of Test for “Leaky Gut” Small Intestinal and Colonic Permeability Using Sugars in Healthy Adults

  Khoshbin, K., Khanna, L., Maselli, D., Atieh, J., Breen-Lyles, M., Arndt, K., Rhoten, D., Dyer, R. B., Singh, R. J., Nayar, S., Bjerkness, S., Harmsen, W. S., Busciglio, I. & Camilleri, M., Aug 2021, In: Gastroenterology. 161, 2, p. 463-475.e13

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Development and validation pathways of artificial intelligence tools evaluated in randomised clinical trials

  Siontis, G. C. M., Sweda, R., Noseworthy, P. A., Friedman, P. A., Siontis, K. C. & Patel, C. J., Dec 27 2021, In: BMJ Health and Care Informatics. 28, 1, e100466.

  Research output: Contribution to journal › Article › peer-review

  Open Access