• 683 Citations
  • 14 Scopus h-Index
20072019

Research output per year

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Research Output

  • 683 Citations
  • 14 Scopus h-Index
  • 27 Article
  • 1 Chapter
2019
Open Access
1 Scopus citations
2017

NOTCH1-Dependent Nitric Oxide Signaling Deficiency in Hypoplastic Left Heart Syndrome Revealed Through Patient-Specific Phenotypes Detected in Bioengineered Cardiogenesis

Wanek Program Genetics Pipeline Group, Apr 1 2017, In : Stem Cells. 35, 4, p. 1106-1119 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Quantification of Etoposide Hypersensitivity: A Sensitive, Functional Method for Assessing Pluripotent Stem Cell Quality

Secreto, F. J., Li, X., Smith, A. J., Bruinsma, E. S., Perales-Clemente, E., Oommen, S., Hawse, G., Hrstka, S. C. L., Arendt, B. K., Brandt, E. B., Wigle, D. A. & Nelson, T. J., Oct 1 2017, In : Stem cells translational medicine. 6, 10, p. 1829-1839 11 p.

Research output: Contribution to journalArticle

2 Scopus citations
2016

Mapping transcriptome profiles of in vitro iPSC-derived cardiac differentiation to in utero heart development

Li, X., Campbell, K. A., Biendarra, S. M., Terzic, A. & Nelson, T. J., Mar 1 2016, In : Genomics Data. 7, p. 129-130 2 p.

Research output: Contribution to journalArticle

Modeling structural and functional deficiencies of RBM20 familial dilated cardiomyopathy using human induced pluripotent stem cells

Wyles, S. P., Li, X., Hrstka, S. C., Reyes, S., Oommen, S., Beraldi, R., Edwards, J., Terzic, A., Olson, T. M. & Nelson, T. J., Jan 15 2016, In : Human Molecular Genetics. 25, 2, p. 254-265 12 p., ddv468.

Research output: Contribution to journalArticle

38 Scopus citations
2015

Nos3<sup>-/-</sup> iPSCs model concordant signatures of in utero cardiac pathogenesis

Campbell, K. A., Li, X., Biendarra, S. M., Terzic, A. & Nelson, T. J., Oct 1 2015, In : Journal of Molecular and Cellular Cardiology. 87, p. 228-236 9 p., 8180.

Research output: Contribution to journalArticle

3 Scopus citations

Quality control of RNA-seq experiments

Li, X., Nair, A., Wang, S. & Wang, L., Jan 10 2015, RNA Bioinformatics. Springer New York, p. 137-146 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quality control of RNA-seq experiments

Li, X., Nair, A., Wang, S. & Wang, L., Jan 1 2015, In : Methods in Molecular Biology. 1269, p. 137-146 10 p.

Research output: Contribution to journalArticle

17 Scopus citations
13 Scopus citations

Systems-Based Technologies in Profiling the Stem Cell Molecular Framework for Cardioregenerative Medicine

Wyles, S. P., Faustino, R. S., Li, X., Terzic, A. & Nelson, T. J., Jun 4 2015, In : Stem Cell Reviews and Reports. 11, 3, p. 501-510 10 p.

Research output: Contribution to journalArticle

1 Scopus citations
2014

Endocytosis of collagen by hepatic stellate cells regulates extracellular matrix dynamics

Bi, Y., Mukhopadhyay, D., Drinane, M., Ji, B. D., Li, X., Cao, S. & Shah, V., Oct 1 2014, In : American Journal of Physiology - Cell Physiology. 307, 7, p. C622-C633

Research output: Contribution to journalArticle

6 Scopus citations

Rbm20-deficient cardiogenesis reveals early disruption of RNA processing and sarcomere remodeling establishing a developmental etiology for dilated cardiomyopathy

Beraldi, R., Li, X., Fernandez, A. M., Reyes, S., Secreto, F., Terzic, A., Olson, T. M. & Nelson, T. J., 2014, In : Human Molecular Genetics. 23, 14, p. 3779-3791 13 p., ddu091.

Research output: Contribution to journalArticle

29 Scopus citations

Selection via pluripotency-related transcriptional screen minimizes the influence of somatic origin on iPSC differentiation propensity

Hartjes, K. A., Li, X., Martinez-Fernandez, A., Roemmich, A. J., Larsen, B., Terzic, A. & Nelson, T. J., 2014, In : Stem Cells. 32, 9, p. 2350-2359 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

The inferred cardiogenic gene regulatory network in the mammalian heart

Bazil, J. N., Stamm, K. D., Li, X., Thiagarajan, R., Nelson, T. J., Tomita-Mitchell, A. & Beard, D. A., Jun 27 2014, In : PLoS One. 9, 6, e100842.

Research output: Contribution to journalArticle

9 Scopus citations

Transcriptional atlas of cardiogenesis maps congenital heart disease interactome

Li, X., Martinez-Fernandez, A., Hartjes, K. A., Kocher, J-P., Olson, T. M., Terzic, A. & Nelson, T. J., Jul 1 2014, In : Physiological Genomics. 46, 13, p. 482-495 14 p.

Research output: Contribution to journalArticle

28 Scopus citations
32 Scopus citations
2013

Disease-causing mitochondrial Heteroplasmy segregated within induced pluripotent stem cell clones derived from a patient with MELAS

Folmes, C., Martinez-Fernandez, A., Perales-Clemente, E., Li, X., McDonald, A., Oglesbee, D., Hrstka, S. C., Terzic, C. M., Terzic, A. & Nelson, T. J., Jul 2013, In : Stem Cells. 31, 7, p. 1298-1308 11 p.

Research output: Contribution to journalArticle

74 Scopus citations

Mathematical model for radial expansion and conflation of intratumoral infectious centers predicts curative oncolytic virotherapy parameters

Bailey, K. R., Kirk, A., Naik, S., Nace, R., Steele, M. B., Suksanpaisan, L., Li, X., Federspiel, M. J., Peng, K-W., Kirk, D. & Russell, S. J., Sep 11 2013, In : PLoS One. 8, 9, e73759.

Research output: Contribution to journalArticle

20 Scopus citations

Natural cardiogenesis-based template predicts cardiogenic potential of induced pluripotent stem cell lines

Martinez-Fernandez, A., Li, X., Hartjes, K. A., Terzic, A. & Nelson, T. J., Oct 2013, In : Circulation: Cardiovascular Genetics. 6, 5, p. 462-471 10 p.

Research output: Contribution to journalArticle

14 Scopus citations
2012

Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer

Asmann, Y., Necela, B. M., Kalari, K. R., Hossain, A., Baker, T. R., Carr, J. M., Davis, C., Getz, J. E., Hostetter, G., Li, X., McLaughlin, S. A., Radisky, D. C., Schroth, G. P., Cunliffe, H. E., Perez, E. A. & Thompson, E. A., Apr 15 2012, In : Cancer Research. 72, 8, p. 1921-1928 8 p.

Research output: Contribution to journalArticle

62 Scopus citations

SAAP-RRBS: Streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

Sun, Z. D., Baheti, S., Middha, S., Kanwar, R., Zhang, Y., Li, X., Beutler, A. S., Klee, E. W., Asmann, Y., Thompson, E. A. & Kocher, J-P., Aug 2012, In : Bioinformatics. 28, 16, p. 2180-2181 2 p., bts337.

Research output: Contribution to journalArticle

32 Scopus citations
2011

Hedgehog signaling controls homeostasis of adult intestinal smooth muscle

Zacharias, W. J., Madison, B. B., Kretovich, K. E., Walton, K. D., Richards, N., Udager, A. M., Li, X. & Gumucio, D. L., Jan 1 2011, In : Developmental Biology. 355, 1, p. 152-162 11 p.

Research output: Contribution to journalArticle

39 Scopus citations
2010

Hedgehog Is an Anti-Inflammatory Epithelial Signal for the Intestinal Lamina Propria

Zacharias, W. J., Li, X., Madison, B. B., Kretovich, K., Kao, J. Y., Merchant, J. L. & Gumucio, D. L., Jan 1 2010, In : Gastroenterology. 138, 7

Research output: Contribution to journalArticle

53 Scopus citations
2009

Dynamic patterning at the pylorus: Formation of an epithelial intestine-stomach boundary in late fetal life

Li, X., Udager, A. M., Hu, C., Qiao, X. T., Richards, N. & Gumucio, D. L., Dec 1 2009, In : Developmental Dynamics. 238, 12, p. 3205-3217 13 p.

Research output: Contribution to journalArticle

27 Scopus citations

Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin

Gudjonsson, J. E., Ding, J., Li, X., Nair, R. P., Tejasvi, T., Qin, Z. S., Ghosh, D., Aphale, A., Gumucio, D. L., Voorhees, J. J., Abecasis, G. R. & Elder, J. T., Jul 3 2009, In : Journal of Investigative Dermatology. 129, 12, p. 2795-2804 10 p.

Research output: Contribution to journalArticle

110 Scopus citations
2007

Deconvoluting the intestine: Molecular evidence for a major role of the mesenchyme in the modulation of signaling cross talk

Li, X., Madison, B. B., Zacharias, W., Kolterud, Å., States, D. & Gumucio, D. L., Jun 27 2007, In : Physiological Genomics. 29, 3, p. 290-301 12 p.

Research output: Contribution to journalArticle

60 Scopus citations