• 3871 Citations
  • 33 Scopus h-Index
20042020

Research output per year

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Research Output

2004

High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results

Searle, B. O., Dasari, S., Turner, M., Reddy, A. P., Choi, D., Wilmarth, P. A., McCormack, A. L., David, L. L. & Nagalla, S. B., Apr 15 2004, In : Analytical Chemistry. 76, 8, p. 2220-2230 11 p.

Research output: Contribution to journalArticle

123 Scopus citations
2005

Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm

Searle, B. C., Dasari, S., Wilmarth, P. A., Turner, M., Reddy, A. P., David, L. L. & Nagalla, S. R., Mar 1 2005, In : Journal of Proteome Research. 4, 2, p. 546-554 9 p.

Research output: Contribution to journalArticle

95 Scopus citations
2006

Age-related changes in human crystalline determined from comparative analysis of post-translational modifications in young and aged lens: Does deamidation contribute to crystallin insolubility?

Wilmarth, P. A., Tanner, S., Dasari, S., Nagalla, S. R., Riviere, M. A., Bafha, V., Pevzner, P. A. & David, L. L., Oct 1 2006, In : Journal of Proteome Research. 5, 10, p. 2554-2566 13 p.

Research output: Contribution to journalArticle

194 Scopus citations
2007

Comprehensive proteomic analysis of human cervical-vaginal fluid

Dasari, S., Pereira, L., Reddy, A. P., Michaels, J. E. A., Lu, X., Jacob, T., Thomas, A., Rodland, M., Roberts, C. T., Gravett, M. G. & Nagalla, S. R., Apr 1 2007, In : Journal of Proteome Research. 6, 4, p. 1258-1268 11 p.

Research output: Contribution to journalArticle

98 Scopus citations

Comprehensive proteomic analysis of the human amniotic fluid proteome: Gestational age-dependent changes

Michaels, J. E. A., Dasari, S., Pereira, L., Reddy, A. P., Lapidus, J. A., Lu, X., Jacob, T., Thomas, A., Rodland, M., Roberts, C. T., Gravett, M. G. & Nagalla, S. R., Apr 1 2007, In : Journal of Proteome Research. 6, 4, p. 1277-1285 9 p.

Research output: Contribution to journalArticle

68 Scopus citations

Identification of novel protein biomarkers of preterm birth in human cervical-vaginal fluid

Pereira, L., Reddy, A. P., Jacob, T., Thomas, A., Schneider, K. A., Dasari, S., Lapidus, J. A., Lu, X., Rodland, M., Roberts, C. T., Gravett, M. G. & Nagalla, S. R., Apr 1 2007, In : Journal of Proteome Research. 6, 4, p. 1269-1276 8 p.

Research output: Contribution to journalArticle

101 Scopus citations

Proteomic analysis of cervical-vaginal fluid: Identification of novel biomarkers for detection of intra-amniotic infection

Gravett, M. G., Thomas, A., Schneider, K. A., Reddy, A. P., Dasari, S., Jacob, T., Lu, X., Rodland, M., Pereira, L., Sadowsky, D. W., Roberts, C. T., Novy, M. J. & Nagalla, S. R., Jan 1 2007, In : Journal of Proteome Research. 6, 1, p. 89-96 8 p.

Research output: Contribution to journalArticle

64 Scopus citations

Proteomic analysis of maternal serum in down syndrome: Identification of novel protein biomarkers

Nagalla, S. R., Canick, J. A., Jacob, T., Schneider, K. A., Reddy, A. P., Thomas, A., Dasari, S., Lu, X., Lapidus, J. A., Lambert-Messerlian, G. M., Gravett, M. G., Roberts, C. T., Luthy, D., Malone, F. D. & D'Alton, M. E., Apr 1 2007, In : Journal of Proteome Research. 6, 4, p. 1245-1257 13 p.

Research output: Contribution to journalArticle

85 Scopus citations

Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses

Dasari, S., Wilmarth, P. A., Rustvold, D. L., Riviere, M. A., Nagalla, S. R. & David, L. L., Sep 1 2007, In : Journal of Proteome Research. 6, 9, p. 3819-3826 8 p.

Research output: Contribution to journalArticle

27 Scopus citations
2008

Accurate annotation of peptide modifications through unrestrictive database search

Tanner, S., Payne, S. H., Dasari, S., Shen, Z., Wilmarth, P. A., David, L. L., Loomis, W. F., Briggs, S. P. & Bafna, V., Jan 1 2008, In : Journal of Proteome Research. 7, 1, p. 170-181 12 p.

Research output: Contribution to journalArticle

45 Scopus citations
2009

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

Ma, Z. Q., Dasari, S., Chambers, M. C., Litton, M. D., Sobecki, S. M., Zimmerman, L. J., Halvey, P. J., Schilling, B., Drake, P. M., Gibson, B. W. & Tabb, D. L., Aug 7 2009, In : Journal of Proteome Research. 8, 8, p. 3872-3881 10 p.

Research output: Contribution to journalArticle

240 Scopus citations

Proteomic identification of salivary biomarkers of type-2 diabetes

Rao, P. V., Reddy, A. P., Lu, X., Dasari, S., Krishnaprasad, A., Biggs, E., Roberts, C. T. & Nagalla, S. R., Jan 1 2009, In : Journal of Proteome Research. 8, 1, p. 239-245 7 p.

Research output: Contribution to journalArticle

167 Scopus citations

Quantification of isotopically overlapping deamidated and 18O-labeled peptides using isotopic Envelope mixture modeling

Dasari, S., Wilmarth, P. A., Reddy, A. P., Robertson, L. J. G., Nagalla, S. R. & David, L. L., Mar 6 2009, In : Journal of Proteome Research. 8, 3, p. 1263-1270 8 p.

Research output: Contribution to journalArticle

32 Scopus citations

The bis-electrophile diepoxybutane cross-links DNA to human histones but does not result in enhanced mutagenesis in recombinant systems

Loecken, E. M., Dasari, S., Hill, S., Tabb, D. L. & Guengerich, F. P., Jun 15 2009, In : Chemical Research in Toxicology. 22, 6, p. 1069-1076 8 p.

Research output: Contribution to journalArticle

18 Scopus citations
2010

Comprehensive maternal serum proteomic profiles of preclinical and clinical preeclampsia

Rasanen, J., Girsen, A., Lu, X., Lapidus, J. A., Standley, M., Reddy, A., Dasari, S., Thomas, A., Jacob, T., Pouta, A., Surcel, H. M., Tolosa, J. E., Gravett, M. G. & Nagalla, S. R., Aug 6 2010, In : Journal of Proteome Research. 9, 8, p. 4274-4281 8 p.

Research output: Contribution to journalArticle

43 Scopus citations

Noninvasive diagnosis of intraamniotic infection: proteomic biomarkers in vaginal fluid

Hitti, J., Lapidus, J. A., Lu, X., Reddy, A. P., Jacob, T., Dasari, S., Eschenbach, D. A., Gravett, M. G. & Nagalla, S. R., Jul 2010, In : American journal of obstetrics and gynecology. 203, 1, p. 32.e1-32.e8

Research output: Contribution to journalArticle

32 Scopus citations

TagRecon: High-throughput mutation identification through sequence tagging

Dasari, S., Chambers, M. C., Slebos, R. J., Zimmerman, L. J., Ham, A. J. L. & Tabb, D. L., Apr 5 2010, In : Journal of Proteome Research. 9, 4, p. 1716-1726 11 p.

Research output: Contribution to journalArticle

77 Scopus citations
2011

Bioinformatics and Database Searching

Dasari, S. & Tabb, D. L., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 231-252 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sequence tagging reveals unexpected modifications in toxicoproteomics

Dasari, S., Chambers, M. C., Codreanu, S. G., Liebler, D. C., Collins, B. C., Pennington, S. R., Gallagher, W. M. & Tabb, D. L., Feb 18 2011, In : Chemical Research in Toxicology. 24, 2, p. 204-216 13 p.

Research output: Contribution to journalArticle

20 Scopus citations
2012

Chronic caloric restriction preserves mitochondrial function in senescence without increasing mitochondrial biogenesis

Lanza, I. R., Zabielski, P., Klaus, K. A., Morse, D. M., Heppelmann, C. J., Bergen, H. R., Dasari, S., Walrand, S., Short, K. R., Johnson, M. L., Robinson, M. M., Schimke, J. M., Jakaitis, D. R., Asmann, Y. W., Sun, Z. & Nair, K. S., Dec 5 2012, In : Cell Metabolism. 16, 6, p. 777-788 12 p.

Research output: Contribution to journalArticle

108 Scopus citations

IgG Fab fragments forming bivalent complexes by a conformational mechanism that is reversible by osmolytes

Nelson, A. D., Hoffmann, M. M., Parks, C. A., Dasari, S., Schrum, A. G. & Gil, D., Dec 14 2012, In : Journal of Biological Chemistry. 287, 51, p. 42936-42950 15 p.

Research output: Contribution to journalArticle

7 Scopus citations

Mapping serum albumin adducts of the food-borne carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5- b ]pyridine by data-dependent tandem mass spectrometry

Peng, L., Dasari, S., Tabb, D. L. & Turesky, R. J., Oct 15 2012, In : Chemical Research in Toxicology. 25, 10, p. 2179-2193 15 p.

Research output: Contribution to journalArticle

16 Scopus citations

Pepitome: Evaluating improved spectral library search for identification complementarity and quality assessment

Dasari, S., Chambers, M. C., Martinez, M. A., Carpenter, K. L., Ham, A. J. L., Vega-Montoto, L. J. & Tabb, D. L., Mar 2 2012, In : Journal of Proteome Research. 11, 3, p. 1686-1695 10 p.

Research output: Contribution to journalArticle

36 Scopus citations

QuaMeter: Multivendor performance metrics for LC-MS/MS proteomics instrumentation

Ma, Z. Q., Polzin, K. O., Dasari, S., Chambers, M. C., Schilling, B., Gibson, B. W., Tran, B. Q., Vega-Montoto, L., Liebler, D. C. & Tabb, D. L., Jul 17 2012, In : Analytical Chemistry. 84, 14, p. 5845-5850 6 p.

Research output: Contribution to journalArticle

41 Scopus citations

Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines

Chen, Y. Y., Dasari, S., Ma, Z. Q., Vega-Montoto, L. J., Li, M. & Tabb, D. L., Sep 1 2012, In : Analytical and bioanalytical chemistry. 404, 4, p. 1115-1125 11 p.

Research output: Contribution to journalArticle

5 Scopus citations
2013

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

Wang, D., Dasari, S., Chambers, M. C., Holman, J. D., Chen, K., Liebler, D. C., Orton, D. J., Purvine, S. O., Monroe, M. E., Chung, C. Y., Rose, K. L. & Tabb, D. L., Apr 1 2013, In : Genomics, Proteomics and Bioinformatics. 11, 2, p. 86-95 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

CPAT: Coding-potential assessment tool using an alignment-free logistic regression model

Wang, L., Park, H. J., Dasari, S., Wang, S., Kocher, J. P. & Li, W., Apr 2013, In : Nucleic acids research. 41, 6, p. e74

Research output: Contribution to journalArticle

597 Scopus citations

Informatics of protein and posttranslational modification detection via shotgun proteomics

Holman, J. D., Dasari, S. & Tabb, D. L., Dec 1 2013, Proteomics for Biomarker Discovery: Methods and Protocols. Zhou, M. & Veenstra, T. (eds.). p. 167-179 13 p. (Methods in Molecular Biology; vol. 1002).

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Scopus citations

Shotgun-proteomics-based clinical testing for diagnosis and classification of amyloidosis

Theis, J. D., Dasari, S., Vrana, J. A., Kurtin, P. J. & Dogan, A., Oct 1 2013, In : Journal of Mass Spectrometry. 48, 10, p. 1067-1077 11 p.

Research output: Contribution to journalReview article

41 Scopus citations
2014

Clinical diagnosis and typing of systemic amyloidosis in subcutaneous fat aspirates by mass spectrometry-based proteomics

Vrana, J. A., Theis, J. D., Dasari, S., Mereuta, O. M., Dispenzieri, A., Zeldenrust, S. R., Gertz, M. A., Kurtin, P. J., Grogg, K. L. & Dogan, A., Jul 1 2014, In : Haematologica. 99, 7, p. 1239-1247 9 p.

Research output: Contribution to journalArticle

72 Scopus citations

Clinical proteome informatics workbench detects pathogenic mutations in hereditary amyloidoses

Dasari, S., Theis, J. D., Vrana, J. A., Zenka, R. M., Zimmermann, M. T., Kocher, J. P. A., Highsmith, W. E., Kurtin, P. J. & Dogan, A. M., May 2 2014, In : Journal of Proteome Research. 13, 5, p. 2352-2358 7 p.

Research output: Contribution to journalArticle

23 Scopus citations

Leukocyte cell-derived chemotaxin 2 (LECT2)-associated amyloidosis is a frequent cause of hepatic amyloidosis in the United States

Mereuta, O. M., Theis, J. D., Vrana, J. A., Law, M. E., Grogg, K. L., Dasari, S., Chandan, V. S., Wu, T. T., Jimenez-Zepeda, V. H., Fonseca, R., Dispenzieri, A., Kurtin, P. J. & Dogan, A. M., Mar 6 2014, In : Blood. 123, 10, p. 1479-1482 4 p.

Research output: Contribution to journalArticle

41 Scopus citations

Phenotyping polyclonal kappa and lambda light chain molecular mass distributions in patient serum using mass spectrometry

Barnidge, D. R., Dasari, S., Ramirez-Alvarado, M., Fontan, A., Willrich, M. A. V., Tschumper, R. C., Jelinek, D. F., Snyder, M. R., Dispenzieri, A., Katzmann, J. A. & Murray, D. L., Nov 7 2014, In : Journal of Proteome Research. 13, 11, p. 5198-5205 8 p.

Research output: Contribution to journalArticle

20 Scopus citations

Using mass spectrometry to monitor monoclonal immunoglobulins in patients with a monoclonal gammopathy

Barnidge, D. R., Dasari, S., Botz, C. M., Murray, D. H., Snyder, M. R., Katzmann, J. A., Dispenzieri, A. & Murray, D. L., Mar 7 2014, In : Journal of Proteome Research. 13, 3, p. 1419-1427 9 p.

Research output: Contribution to journalArticle

56 Scopus citations
2015

C4 Glomerulopathy: A Disease Entity Associated With C4d Deposition

Sethi, S. M., Quint, P. S., O'Seaghdha, C. M., Fervenza, F. C., Bijol, V., Dorman, A., Dasari, S., Smith, R. J. H., Kurtin, P. J. & Rennke, H. G., Sep 14 2015, (Accepted/In press) In : American Journal of Kidney Diseases.

Research output: Contribution to journalArticle

13 Scopus citations

Correlation of histomorphological pattern of cardiac amyloid deposition with amyloid type: a histological and proteomic analysis of 108 cases

Larsen, B. T., Mereuta, O. M., Dasari, S., Fayyaz, A. U., Theis, J. D., Vrana, J. A., Grogan, M., Dogan, A. M., Dispenzieri, A., Edwards, W. D., Kurtin, P. J. & Maleszewski, J. J., 2015, (Accepted/In press) In : Histopathology.

Research output: Contribution to journalArticle

16 Scopus citations

Differential Effect of Endurance Training on Mitochondrial Protein Damage, Degradation, and Acetylation in the Context of Aging

Johnson, M. L., Irving, B. A., Lanza, I. R., Vendelbo, M. H., Konopka, A. R., Robinson, M. M., Henderson, G. C., Klaus, K. A., Morse, D. M., Heppelmann, C., Bergen, H. R. B. III., Dasari, S., Schimke, J. M., Jakaitis, D. R. & Nair, K. S., Nov 1 2015, In : Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 70, 11, p. 1386-1393 8 p.

Research output: Contribution to journalArticle

36 Scopus citations

Eicosapentaenoic acid but not docosahexaenoic acid restores skeletal muscle mitochondrial oxidative capacity in old mice

Johnson, M. L., Lalia, A. Z., Dasari, S., Pallauf, M., Fitch, M., Hellerstein, M. K. & Lanza, I. R., Oct 1 2015, In : Aging Cell. 14, 5, p. 734-743 10 p.

Research output: Contribution to journalArticle

26 Scopus citations

Proteomic detection of immunoglobulin light chain variable region peptides from amyloidosis patient biopsies

Dasari, S., Theis, J. D., Vrana, J. A., Meureta, O. M., Quint, P. S., Muppa, P., Zenka, R. M., Tschumper, R. C., Jelinek, D. F., Davila, J. I., Sarangi, V., Kurtin, P. J. & Dogan, A., Apr 3 2015, In : Journal of Proteome Research. 14, 4, p. 1957-1967 11 p.

Research output: Contribution to journalArticle

26 Scopus citations

Subset of Kappa and Lambda Germline Sequences Result in Light Chains with a Higher Molecular Mass Phenotype

Barnidge, D. R., Lundström, S. L., Zhang, B., Dasari, S., Murray, D. L. & Zubarev, R. A., Dec 4 2015, In : Journal of Proteome Research. 14, 12, p. 5283-5290 8 p.

Research output: Contribution to journalArticle

5 Scopus citations
2016

Altered skeletal muscle mitochondrial proteome as the basis of disruption of mitochondrial function in diabetic mice

Zabielski, P., Lanza, I. R., Gopala, S., Heppelmann, C. J. H., Bergen, H. R., Dasari, S. & Nair, K. S., Mar 2016, In : Diabetes. 65, 3, p. 561-573 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

Clinical, biopsy, and mass spectrometry characteristics of renal apolipoprotein A-IV amyloidosis

Dasari, S., Amin, M. S., Kurtin, P. J., Vrana, J. A., Theis, J. D., Grogg, K. L., Alexander, M. P., Nasr, S. H., Fervenza, F. C., Leung, N. & Sethi, S. M., Sep 1 2016, In : Kidney International. 90, 3, p. 658-664 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Clonotypic light chain peptides identified for monitoring minimal residual disease in multiple myeloma without bone marrow aspiration

Robert Bergen, H., Dasari, S., Dispenzieri, A., Mills, J. R., Ramirez-Alvarado, M., Tschumper, R. C., Jelinek, D. F., Barnidge, D. R. & Murray, D. L., Jan 2016, In : Clinical chemistry. 62, 1, p. 243-251 9 p.

Research output: Contribution to journalArticle

25 Scopus citations

Comparative proteomic analysis of extracellular vesicles isolated from porcine adipose tissue-derived mesenchymal stem/stromal cells

Eirin, A., Zhu, X. Y., Puranik, A. S., Woollard, J. R., Tang, H., Dasari, S., Lerman, A., van Wijnen, A. J. & Lerman, L. O., Oct 27 2016, In : Scientific Reports. 6, 36120.

Research output: Contribution to journalArticle

58 Scopus citations

Comprehensive assessment of M-proteins using nanobody enrichment coupled to MALDI-TOF mass spectrometry

Mills, J. R., Kohlhagen, M. C., Dasari, S., Vanderboom, P. M., Kyle, R. A., Katzmann, J. A., Willrich, M. A. V., Barnidge, D. R., Dispenzieri, A. & Murray, D. L., Oct 2016, In : Clinical chemistry. 62, 10, p. 1334-1344 11 p.

Research output: Contribution to journalArticle

46 Scopus citations

Functional and proteomic alterations of plasma high density lipoproteins in type 1 diabetes mellitus

Manjunatha, S., Distelmaier, K., Dasari, S., Carter, R. E., Kudva, Y. C. & Nair, K. S., Sep 1 2016, In : Metabolism: Clinical and Experimental. 65, 9, p. 1421-1431 11 p.

Research output: Contribution to journalArticle

26 Scopus citations

Hepatic adenomas with synchronous or metachronous fibrolamellar carcinomas: Both are characterized by LFABP loss

Graham, R., Terracciano, L. M., Meves, A., Vanderboom, P. M., Dasari, S., Yeh, M. M., Torbenson, M. & Cruise, M. W., Jun 1 2016, In : Modern Pathology. 29, 6, p. 607-615 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Integrated mate-pair and RNA sequencing identifies novel, targetable gene fusions in peripheral T-cell lymphoma

Boddicker, R. L., Razidlo, G. L., Dasari, S., Zeng, Y., Hu, G., Knudson, R. A., Greipp, P. T., Davila, J. I., Johnson, S. H., Porcher, J. C., Smadbeck, J. B., Eckloff, B. W., Billadeau, D. D., Kurtin, P. J., McNiven, M. A., Link, B. K., Ansell, S. M., Cerhan, J. R., Asmann, Y. W., Vasmatzis, G. & 1 others, Feldman, A. L., Sep 1 2016, In : Blood. 128, 9, p. 1234-1245 12 p.

Research output: Contribution to journalArticle

52 Scopus citations

Label-free proteomic analysis of protein changes in the striatum during chronic ethanol use and early withdrawal

Ayers-Ringler, J. R., Oliveros, A., Qiu, Y., Lindberg, D. M., Hinton, D. J., Moore, R. M., Dasari, S. & Choi, D. S., Mar 11 2016, In : Frontiers in Behavioral Neuroscience. 10, MAR, 46.

Research output: Contribution to journalArticle

9 Scopus citations