• 4199 Citations
  • 29 Scopus h-Index
20032020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Article
Article

Absence of NUCKS augments paracrine effects of mesenchymal stem cells-mediated cardiac protection

Zhang, Y., Chiu, S., Liang, X., Chai, Y. H., Qin, Y., Wang, J., Li, X., Qiu, B., Tergaonkar, V., Tse, H. F. & Lian, Q., Jul 1 2017, In : Experimental Cell Research. 356, 1, p. 74-84 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

Acacetin causes a frequency- and use-dependent blockade of hKv1.5 channels by binding to the S6 domain

Wu, H. J., Wu, W., Sun, H. Y., Qin, G. W., Wang, H. B., Wang, P., Yalamanchili, H. K., Wang, J., Tse, H. F., Lau, C. P., Vanhoutte, P. M. & Li, G. R., Dec 1 2011, In : Journal of Molecular and Cellular Cardiology. 51, 6, p. 966-973 8 p.

Research output: Contribution to journalArticle

28 Scopus citations

Activation of E-prostanoid 3 receptor in macrophages facilitates cardiac healing after myocardial infarction

Yu, Y., Tang, J., Shen, Y., Chen, G., Wan, Q., Wang, K., Zhang, J., Qin, J., Liu, G., Zuo, S., Tao, B., Yu, Y., Wang, J. & Lazarus, M., Mar 3 2017, In : Nature Communications. 8, 14656.

Research output: Contribution to journalArticle

11 Scopus citations

A fast and accurate SNP detection algorithm for next-generation sequencing data

Xu, F., Wang, W., Wang, P., Jun Li, M., Chung Sham, P. & Wang, J., Dec 1 2012, In : Nature communications. 3, 1258.

Research output: Contribution to journalArticle

33 Scopus citations

A functional single-nucleotide polymorphism in the promoter of the gene encoding interleukin 6 is associated with susceptibility to tuberculosis

Zhang, G., Zhou, B., Wang, W., Zhang, M., Zhao, Y., Wang, Z., Yang, L., Zhai, J., Feng, C. G., Wang, J. & Chen, X., Jun 1 2012, In : Journal of Infectious Diseases. 205, 11, p. 1697-1704 8 p.

Research output: Contribution to journalArticle

34 Scopus citations

A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer

Hunter, D. J., Kraft, P., Jacobs, K. B., Cox, D. G., Yeager, M., Hankinson, S. E., Wacholder, S., Wang, Z., Welch, R., Hutchinson, A., Wang, J., Yu, K., Chatterjee, N., Orr, N., Willett, W. C., Colditz, G. A., Ziegler, R. G., Berg, C. D., Buys, S. S., McCarty, C. A. & 10 others, Feigelson, H. S., Calle, E. E., Thun, M. J., Hayes, R. B., Tucker, M., Gerhard, D. S., Fraumeni, J. F., Hoover, R. N., Thomas, G. & Chanock, S. J., Jul 1 2007, In : Nature Genetics. 39, 7, p. 870-874 5 p.

Research output: Contribution to journalArticle

1176 Scopus citations

A mammalian promoter model links cis elements to genetic networks

Wang, J. & Hannenhalli, S., Aug 18 2006, In : Biochemical and Biophysical Research Communications. 347, 1, p. 166-177 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Analysis of heritability and shared heritability based on genome-wide association studies for thirteen cancer types

Sampson, J. N., Wheeler, W. A., Yeager, M., Panagiotou, O., Wang, Z., Berndt, S. I., Lan, Q., Abnet, C. C., Amundadottir, L. T., Figueroa, J. D., Landi, M. T., Mirabello, L., Savage, S. A., Taylor, P. R., De Vivo, I., McGlynn, K. A., Purdue, M. P., Rajaraman, P., Adami, H. O., Ahlbom, A. & 388 others, Albanes, D., Amary, M. F., An, S. J., Andersson, U., Andriole, G., Andrulis, I. L., Angelucci, E., Ansell, S. M., Arici, C., Armstrong, B. K., Arslan, A. A., Austin, M. A., Baris, D., Barkauskas, D. A., Bassig, B. A., Becker, N., Benavente, Y., Benhamou, S., Berg, C., Van Den Berg, D., Bernstein, L., Bertrand, K. A., Birmann, B. M., Black, A., Boeing, H., Boffetta, P., Boutron-Ruault, M. C., Bracci, P. M., Brinton, L., Brooks-Wilson, A. R., Bueno-De-Mesquita, H. B., Burdett, L., Buring, J., Butler, M. A., Cai, Q., Cancel-Tassin, G., Canzian, F., Carrato, A., Carreon, T., Carta, A., Chan, J. K. C., Chang, E. T., Chang, G. C., Chang, I. S., Chang, J., Chang-Claude, J., Chen, C. J., Chen, C. Y., Chen, C., Chen, C. H., Chen, C., Chen, H., Chen, K., Chen, K. Y., Chen, K. C., Chen, Y., Chen, Y. H., Chen, Y. S., Chen, Y. M., Chien, L. H., Chirlaque, M. D., Choi, J. E., Choi, Y. Y., Chow, W. H., Chung, C. C., Clavel, J., Clavel-Chapelon, F., Cocco, P., Colt, J. S., Comperat, E., Conde, L., Connors, J. M., Conti, D., Cortessis, V. K., Cotterchio, M., Cozen, W., Crouch, S., Crous-Bou, M., Cussenot, O., Davis, F. G., Ding, T., Diver, W. R., Dorronsoro, M., Dossus, L., Duell, E. J., Ennas, M. G., Erickson, R. L., Feychting, M., Flanagan, A. M., Foretova, L., Fraumeni, J. F., Freedman, N. D., Freeman, L. E. B., Fuchs, C., Gago-Dominguez, M., Gallinger, S., Gao, Y. T., Gapstur, S. M., Garcia-Closas, M., García-Closas, R., Gascoyne, R. D., Gastier-Foster, J., Gaudet, M. M., Gaziano, J. M., Giffen, C., Giles, G. G., Giovannucci, E., Glimelius, B., Goggins, M., Gokgoz, N., Goldstein, A. M., Gorlick, R., Gross, M., Grubb, R., Gu, J., Guan, P., Gunter, M., Guo, H., Habermann, T. M., Haiman, C. A., Halai, D., Hallmans, G., Hassan, M., Hattinger, C., He, Q., He, X., Helzlsouer, K., Henderson, B., Henriksson, R., Hjalgrim, H., Hoffman-Bolton, J., Hohensee, C., Holford, T. R., Holly, E. A., Hong, Y. C., Hoover, R. N., Horn-Ross, P. L., Hosain, G. M. M., Hosgood, H. D., Hsiao, C. F., Hu, N., Hu, W., Hu, Z., Huang, M. S., Huerta, J. M., Hung, J. Y., Hutchinson, A., Inskip, P. D., Jackson, R. D., Jacobs, E. J., Jenab, M., Jeon, H. S., Ji, B. T., Jin, G., Jin, L., Johansen, C., Johnson, A., Jung, Y. J., Kaaks, R., Kamineni, A., Kane, E., Kang, C. H., Karagas, M. R., Kelly, R. S., Khaw, K. T., Kim, C., Kim, H. N., Kim, J. H., Kim, J. S., Kim, Y. H., Kim, Y. T., Kim, Y. C., Kitahara, C. M., Klein, A. P., Klein, R. J., Kogevinas, M., Kohno, T., Kolonel, L. N., Kooperberg, C., Kricker, A., Krogh, V., Kunitoh, H., Kurtz, R. C., Kweon, S. S., La Croix, A., Lawrence, C., Lecanda, F., Lee, V. H. F., Li, D., Li, H., Li, J., Li, Y. J., Li, Y., Liao, L. M., Liebow, M., Lightfoot, T., Lim, W. Y., Lin, C. C., Lin, D., Lindstrom, S., Linet, M. S., Link, B. K., Liu, C., Liu, J., Liu, L., Ljungberg, B., Lloreta, J., Di Lollo, S., Lu, D., Lund, E., Malats, N., Mannisto, S., Marchand, L. L., Marina, N., Masala, G., Mastrangelo, G., Matsuo, K., Maynadie, M., McKay, J., McKean-Cowdin, R., Melbye, M., Melin, B. S., Michaud, D. S., Mitsudomi, T., Monnereau, A., Montalvan, R., Moore, L. E., Mortensen, L. M., Nieters, A., North, K. E., Novak, A. J., Oberg, A. L., Offit, K., Oh, I. J., Olson, S. H., Palli, D., Pao, W., Park, I. K., Park, J. Y., Park, K. H., Patiño-Garcia, A., Pavanello, S., Peeters, P. H. M., Perng, R. P., Peters, U., Petersen, G. M., Picci, P., Pike, M. C., Porru, S., Prescott, J., Prokunina-Olsson, L., Qian, B., Qiao, Y. L., Rais, M., Riboli, E., Riby, J., Risch, H. A., Rizzato, C., Rodabough, R., Roman, E., Roupret, M., Ruder, A. M., De Sanjose, S., Scelo, G., Schned, A., Schumacher, F., Schwartz, K., Schwenn, M., Scotlandi, K., Seow, A., Serra, C., Serra, M., Sesso, H. D., Setiawan, V. W., Severi, G., Severson, R. K., Shanafelt, T. D., Shen, H., Shen, W., Shin, M. H., Shiraishi, K., Shu, X. O., Siddiq, A., Sierrasesúmaga, L., Sihoe, A. D. L., Skibola, C. F., Smith, A., Smith, M. T., Southey, M. C., Spinelli, J. J., Staines, A., Stampfer, M., Stern, M. C., Stevens, V. L., Stolzenberg-Solomon, R. S., Su, J., Su, W. C., Sund, M., Sung, J. S., Sung, S. W., Tan, W., Tang, W., Tardón, A., Thomas, D., Thompson, C. A., Tinker, L. F., Tirabosco, R., Tjønneland, A., Travis, R. C., Trichopoulos, D., Tsai, F. Y., Tsai, Y. H., Tucker, M., Turner, J., Vajdic, C. M., Vermeulen, R. C. H., Villano, D. J., Vineis, P., Virtamo, J., Visvanathan, K., Wactawski-Wende, J., Wang, C., Wang, C. L., Wang, J. C., Wang, J., Wei, F., Weiderpass, E., Weiner, G. J., Weinstein, S., Wentzensen, N., White, E., Witzig, T. E., Wolpin, B. M., Wong, M. P., Wu, C., Wu, G., Wu, J., Wu, T., Wu, W., Wu, X., Wu, Y. L., Wunder, J. S., Xiang, Y. B., Xu, J., Xu, P., Yang, P. C., Yang, T. Y., Ye, Y., Yin, Z., Yokota, J., Yoon, H. I., Yu, C. J., Yu, H., Yu, K., Yuan, J. M., Zelenetz, A., Zeleniuch-Jacquotte, A., Zhang, X. C., Zhang, Y., Zhao, X., Zhao, Z., Zheng, H., Zheng, T., Zheng, W., Zhou, B., Zhu, M., Zucca, M., Boca, S. M., Cerhan, J. R., Ferri, G. M., Hartge, P., Hsiung, C. A., Magnani, C., Miligi, L., Morton, L. M., Smedby, K. E., Teras, L. R., Vijai, J., Wang, S. S., Brennan, P., Caporaso, N. E., Hunter, D. J., Kraft, P., Rothman, N., Silverman, D. T., Slager, S. L., Chanock, S. J. & Chatterjee, N., 2015, In : Journal of the National Cancer Institute. 107, 12

Research output: Contribution to journalArticle

71 Scopus citations

An integrative method to decode regulatory logics in gene transcription

Yan, B., Guan, D., Wang, C., Wang, J., He, B., Qin, J., Boheler, K. R., Lu, A., Zhang, G. & Zhu, H., Dec 1 2017, In : Nature communications. 8, 1, 1044.

Research output: Contribution to journalArticle

9 Scopus citations

A novel neural response algorithm for protein function prediction

Yalamanchili, H. K., Xiao, Q. W. & Wang, J., Jul 16 2012, In : BMC Systems Biology. 6, SUPPL.1, S19.

Research output: Contribution to journalArticle

4 Scopus citations

An SNP selection strategy identified IL-22 associating with susceptibility to tuberculosis in Chinese

Zhang, G., Chen, X., Chan, L., Zhang, M., Zhu, B., Wang, L., Zhu, X., Zhang, J., Zhou, B. & Wang, J., Dec 1 2011, In : Scientific reports. 1, 20.

Research output: Contribution to journalArticle

30 Scopus citations

Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations

Seow, W. J., Matsuo, K., Hsiung, C. A., Shiraishi, K., Song, M., NamKim, H., Wong, M. P., Hong, Y. C., Dean Hosgood, H., Wang, Z., Chang, I. S., Wang, J. C., Chatterjee, N., Tucker, M., Wei, H., Mitsudomi, T., Zheng, W., Kim, J. H., Zhou, B., Caporaso, N. E. & 166 others, Albanes, D., Shin, M. H., Chung, L. P., An, S. J., Wang, P., Zheng, H., Yatabe, Y., Zhang, X. C., Kim, Y. T., Shu, X. O., Kim, Y. C., Bassig, B. A., Chang, J., Man Ho, J. C., Ji, B. T., Kubo, M., Daigo, Y., Ito, H., Momozawa, Y., Ashikawa, K., Kamatani, Y., Honda, T., Sakamoto, H., Kunitoh, H., Tsuta, K., Watanabe, S. I., Nokihara, H., Miyagi, Y., Nakayama, H., Matsumoto, S., Tsuboi, M., Goto, K., Yin, Z., Shi, J., Takahashi, A., Goto, A., Minamiya, Y., Shimizu, K., Tanaka, K., Wu, T., Wei, F., Wong, J. Y. Y., Matsuda, F., Su, J., Kim, Y. H., Oh, I. J., Song, F., Lee, V. H. F., Su, W. C., Chen, Y. M., Chang, G. C., Chen, K. Y., Huang, M. S., Yang, P. C., Lin, H. C., Xiang, Y. B., Seow, A., Park, J. Y., Kweon, S. S., Chen, C. J., Li, H., Gao, Y. T., Wu, C., Qian, B., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Wang, W. C., Chung, C. C., Lawrence, C., Burdett, L., Yeager, M., Jacobs, K. B., Hutchinson, A., Berndt, S. I., He, X., Wu, W., Wang, J., Li, Y., Choi, J. E., Park, K. H., Sung, S. W., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Yang, T. Y., Xu, J., Guan, P., Tan, W., Wang, C. L., Loon Sihoe, A. D., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Chen, C. Y., Vermeulen, R., Wu, J., Lim, W. Y., Chen, K. C., Chan, J. K. C., Chu, M., Li, Y. J., Li, J., Chen, H., Yu, C. J., Jin, L., Lo, Y. L., Chen, Y. H., Fraumeni, J. F., Liu, J., Yamaji, T., Yang, Y., Hicks, B., Wyatt, K., Li, S. A., Dai, J., Ma, H., Jin, G., Song, B., Wang, Z., Cheng, S., Li, X., Ren, Y., Cui, P., Iwasaki, M., Shimazu, T., Tsugane, S., Zhu, J., Jiang, G., Fei, K., Wu, G., Chien, L. H., Chen, H. L., Su, Y. C., Tsai, F. Y., Chen, Y. S., Yu, J., Stevens, V. L., Laird-Offringa, I. A., Marconett, C. N., Lin, D., Chen, K., Wu, Y. L., Landi, M. T., Shen, H., Rothman, N., Kohno, T., Chanock, S. J. & Lan, Q., 2017, In : Human molecular genetics. 26, 2, p. 454-465 12 p.

Research output: Contribution to journalArticle

22 Scopus citations

Basonuclin regulates a subset of ribosomal RNA genes in HaCAT cells

Zhang, S., Wang, J. & Tseng, H., Sep 19 2007, In : PloS one. 2, 9, e902.

Research output: Contribution to journalArticle

15 Scopus citations

Bayesian detection of embryonic gene expression onset in C. elegans

Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In : Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

Research output: Contribution to journalArticle

3 Scopus citations

Bio-coordination of bismuth in Helicobacter pylori revealed by immobilized metal affinity chromatography

Wang, Y., Tsang, C. N., Xu, F., Kong, P. W., Hu, L., Wang, J., Chu, I. K., Li, H. & Sun, H., 2015, In : Chemical Communications. 51, 92, p. 16479-16482 4 p.

Research output: Contribution to journalArticle

17 Scopus citations

Cepip: Context-dependent epigenomic weighting for prioritization of regulatory variants and disease-associated genes

Li, M. J., Li, M., Liu, Z., Yan, B., Pan, Z., Huang, D., Liang, Q., Ying, D., Xu, F., Yao, H., Wang, P., Kocher, J. P. A., Xia, Z., Sham, P. C., Liu, J. S. & Wang, J., Mar 16 2017, In : Genome biology. 18, 1, 52.

Research output: Contribution to journalArticle

17 Scopus citations

ChIP-Array: Combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor

Qin, J., Li, M. J., Wang, P., Zhang, M. Q. & Wang, J., Jul 1 2011, In : Nucleic acids research. 39, SUPPL. 2, p. W430-W436

Research output: Contribution to journalArticle

45 Scopus citations

ChIP-Array 2: Integrating multiple omics data to construct gene regulatory networks

Wang, P., Qin, J., Qin, Y., Zhu, Y., Wang, L. Y., Li, M. J., Zhang, M. Q. & Wang, J., 2015, In : Nucleic acids research. 43, W1, p. W264-W269

Research output: Contribution to journalArticle

12 Scopus citations

Chronic Cardiovascular Disease-Associated Gene Network Analysis in Human Umbilical Vein Endothelial Cells Exposed to 2,3,7,8-Tetrachlorodibenzo-p-dioxin

Yu, Y., Qin, J., Chen, D., Wang, H., Wang, J. & Yu, Y., Jan 1 2015, In : Cardiovascular toxicology. 15, 2, p. 157-171 15 p.

Research output: Contribution to journalArticle

7 Scopus citations

CMGRN: A web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data

Guan, D., Shao, J., Deng, Y., Wang, P., Zhao, Z., Liang, Y., Wang, J. & Yan, B., Jan 1 2014, In : Bioinformatics. 30, 8, p. 1190-1192 3 p.

Research output: Contribution to journalArticle

18 Scopus citations

Colonoscopy surveillance for high risk polyps does not always prevent colorectal cancer

Mouchli, M. A., Ouk, L., Scheitel, M. R., Chaudhry, A. P., Felmlee-Devine, D., Grill, D. E., Rashtak, S., Wang, P., Wang, J., Chaudhry, R., Smyrk, T. C., Oberg, A. L., Druliner, B. R. & Boardman, L. A., Feb 28 2018, In : World journal of gastroenterology. 24, 8, p. 905-916 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

Common colorectal cancer risk alleles contribute to the multiple colorectal adenoma phenotype, but do not influence colonic polyposis in FAP

Cheng, T. H. T., Gorman, M., Martin, L., Barclay, E., Casey, G., Newcomb, P. A., Conti, D. V., Schumacher, F. R., Gallinger, S., Lindor, N. M., Hopper, J., Jenkins, M., Hunter, D. J., Kraft, P., Jacobs, K. B., Cox, D. G., Yeager, M., Hankinson, S. E., Wacholder, S., Wang, Z. & 146 others, Welch, R., Hutchinson, A., Wang, J., Yu, K., Chatterjee, N., Orr, N., Willett, W. C., Colditz, G. A., Ziegler, R. G., Berg, C. D., Buys, S. S., McCarty, C. A., Feigelson, H. S., Calle, E. E., Thun, M. J., Hayes, R. B., Tucker, M., Gerhard, D. S., Fraumeni, J. F., Hoover, R. N., Thomas, G., Chanock, S. J., Ciampa, J., Gonzalez-Bosquet, J., Berndt, S., Amundadottir, L., Diver, W. R., Albanes, D., Virtamo, J., Weinstein, S. J., Cancel-Tassin, G., Cussenot, O., Valeri, A., Andriole, G. L., Crawford, E. D., Haiman, C. A., Henderson, B., Kolonel, L., Marchand, L. L., Siddiq, A., Riboli, E., Key, T. J., Kaaks, R., Isaacs, W., Isaacs, S., Wiley, K. E., Gronberg, H., Wiklund, F., Stattin, P., Xu, J., Zheng, S. L., Sun, J., Vatten, L. J., Hveem, K., Kumle, M., Purdue, M. P., Johansson, M., Zelenika, D., Toro, J. R., Scelo, G., Moore, L. E., Prokhortchouk, E., Wu, X., Kiemeney, L. A., Gaborieau, V., Chow, W. H., Zaridze, D., Matveev, V., Lubinski, J., Trubicka, J., Szeszenia-Dabrowska, N., Lissowska, J., Rudnai, P., Fabianova, E., Bucur, A., Bencko, V., Foretova, L., Janout, V., Boffetta, P., Colt, J. S., Davis, F. G., Schwartz, K. L., Banks, R. E., Selby, P. J., Harnden, P., Hsing, A. W., Grubb, R. L., Boeing, H., Vineis, P., Clavel-Chapelon, F., Palli, D., Tumino, R., Krogh, V., Panico, S., Duell, E. J., Quirós, J. R., Sanchez, M. J., Navarro, C., Ardanaz, E., Dorronsoro, M., Khaw, K. T., Allen, N. E., Bueno-de-Mesquita, H. B., Peeters, P. H. M., Trichopoulos, D., Linseisen, J., Ljungberg, B., Overvad, K., Tjønneland, A., Romieu, I., Mukeria, A., Shangina, O., Stevens, V. L., Gapstur, S. M., Pharoah, P. D., Easton, D. F., Njølstad, I., Tell, G. S., Stoltenberg, C., Kumar, R., Koppova, K., Benhamou, S., Oosterwijk, E., Vermeulen, S. H., Aben, K. K. H., Van Der Marel, S. L., Ye, Y., Wood, C. G., Pu, X., Mazur, A. M., Boulygina, E. S., Chekanov, N. N., Foglio, M., Lechner, D., Gut, I., Heath, S., Blanche, H., Skryabin, K. G., McKay, J. D., Rothman, N., Lathrop, M., Brennan, P., Saunders, B., Thomas, H., Clark, S. & Tomlinson, I., Feb 20 2015, In : European Journal of Human Genetics. 23, 2, p. 260-263 4 p.

Research output: Contribution to journalArticle

9 Scopus citations

Correlated evolution of transcription factors and their binding sites

Yang, S., Yalamanchili, H. K., Li, X., Yao, K. M., Sham, P. C., Zhang, M. Q. & Wang, J., Nov 1 2011, In : Bioinformatics. 27, 21, p. 2972-2978 7 p., btr503.

Research output: Contribution to journalArticle

17 Scopus citations

CTCF controls HOXA cluster silencing and mediates PRC2-repressive higher-order chromatin structure in NT2/D1 cells

Xu, M., Zhao, G. N., Lv, X., Liu, G., Wang, L. Y., Hao, D. L., Wang, J., Liu, D. P. & Liang, C. C., Jan 1 2014, In : Molecular and cellular biology. 34, 20, p. 3867-3879 13 p.

Research output: Contribution to journalArticle

20 Scopus citations

Current trend of annotating single nucleotide variation in humans - A case study on SNVrap

Li, M. J. & Wang, J., Jun 1 2015, In : Methods. 79, p. 32-40 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Dataset of TWIST1-regulated genes in the cranial mesoderm and a transcriptome comparison of cranial mesoderm and cranial neural crest

Bildsoe, H., Fan, X., Wilkie, E. E., Ashoti, A., Jones, V. J., Power, M., Qin, J., Wang, J., Tam, P. P. L. & Loebel, D. A. F., Dec 2016, In : Data in Brief. 9, p. 372-375 4 p.

Research output: Contribution to journalArticle

DbPSHP: A database of recent positive selection across human populations

Li, M. J., Wang, L. Y., Xia, Z., Wong, M. P., Sham, P. C. & Wang, J., Jan 1 2014, In : Nucleic acids research. 42, D1, p. D910-D916

Research output: Contribution to journalArticle

29 Scopus citations

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment

Yalamanchili, H. K., Yan, B., Li, M. J., Qin, J., Zhao, Z., Chin, F. Y. L. & Wang, J., Feb 1 2014, In : Bioinformatics. 30, 3, p. 377-383 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

EpiRegNet: Constructing epigenetic regulatory network from high throughput gene expression data for humans

Wang, L. Y., Wang, P., Li, M. J., Qin, J., Wang, X., Zhang, M. Q. & Wang, J., Jan 1 2011, In : Epigenetics. 6, 12, p. 1505-1512 8 p.

Research output: Contribution to journalArticle

16 Scopus citations

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

Yip, S. H., Sham, P. C. & Wang, J., Mar 27 2018, In : Briefings in bioinformatics. 20, 4, p. 1583-1589 7 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Evolution of Drug-resistant Acinetobacter baumannii after DCD Renal Transplantation

Jiang, H., Cao, L., Qu, L., Qu, T., Liu, G., Wang, R., Li, B., Wang, Y., Ying, C., Chen, M., Lu, Y., Feng, S., Xiao, Y., Wang, J., Wu, J. & Chen, J., Dec 1 2017, In : Scientific reports. 7, 1, 1968.

Research output: Contribution to journalArticle

2 Scopus citations

Exploring genetic associations with ceRNA regulation in the human genome

Li, M. J., Zhang, J., Liang, Q., Xuan, C., Wu, J., Jiang, P., Li, W., Zhu, Y., Wang, P., Fernandez, D., Shen, Y., Chen, Y., Kocher, J. P. A., Yu, Y., Sham, P. C., Wang, J., Liu, J. S. & Liu, X. S., 2017, In : Nucleic acids research. 45, 10, p. 5653-5665 13 p.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Exploring the function of genetic variants in the non-coding genomic regions: Approaches for identifying human regulatory variants affecting gene expression

Li, M. J., Yan, B., Sham, P. C. & Wang, J., Aug 2 2014, In : Briefings in bioinformatics. 16, 3, p. 393-412 20 p., bbu018.

Research output: Contribution to journalArticle

25 Scopus citations

Exploring the sequence patterns in the α-helices of proteins

Wang, J. & Feng, J. A., Nov 1 2003, In : Protein Engineering. 16, 11, p. 799-807 9 p.

Research output: Contribution to journalArticle

39 Scopus citations

FaSD-somatic: A fast and accurate somatic SNV detection algorithm for cancer genome sequencing data

Wang, W., Wang, P., Xu, F., Luo, R., Wong, M. P., Lam, T. W. & Wang, J., Sep 1 2014, In : Bioinformatics. 30, 17, p. 2498-2500 3 p.

Research output: Contribution to journalArticle

10 Scopus citations

FastPval: A fast and memory efficient program to calculate very low P-values from empirical distribution

Li, M. J., Sham, P. C. & Wang, J., Nov 2010, In : Bioinformatics. 26, 22, p. 2897-2899 3 p.

Research output: Contribution to journalArticle

16 Scopus citations

Five endometrial cancer risk loci identified through genome-wide association analysis

Cheng, T. H. T., Thompson, D. J., O'Mara, T. A., Painter, J. N., Glubb, D. M., Flach, S., Lewis, A., French, J. D., Freeman-Mills, L., Church, D., Gorman, M., Martin, L., Hodgson, S., MWebb, P., Attia, J., Holliday, E. G., McEvoy, M., Scott, R. J., KHenders, A., Martin, N. G. & 67 others, Montgomery, G. W., Nyholt, D. R., Ahmed, S., Healey, C. S., Shah, M., Dennis, J., Fasching, P. A., Beckmann, M. W., Hein, A., Ekici, A. B., Hall, P., Czene, K., Darabi, H., Li, J., Dörk, T., Dürst, M., Hillemanns, P., Runnebaum, I., Amant, F., Schrauwen, S., Zhao, H., Lambrechts, D., Depreeuw, J., Dowdy, S. C., Goode, E. L., Fridley, B. L., Winham, S. J., NjØlstad, T. S., Salvesen, H. B., Trovik, J., Werner, H. M. J., Ashton, K., Otton, G., Proietto, T., Liu, T., Mints, M., Tham, E., Li, M. J., Yip, S. H., Wang, J., KBolla, M., Michailidou, K., Wang, Q., Tyrer, J. P., Dunlop, M., Houlston, R., Palles, C., Hopper, J. L., Peto, J., Swerdlow, A. J., Burwinkel, B., Brenner, H., Meindl, A., Brauch, H., Lindblom, A., Chang-Claude, J., Couch, F. J., Giles, G. G., Kristensen, V. N., Cox, A., MCunningham, J., Pharoah, P. D. P., Dunning, A. M., Edwards, S. L., Easton, D. F., Tomlinson, I. & Spurdle, A. B., Jun 1 2016, In : Nature Genetics. 48, 6, p. 667-674 8 p.

Research output: Contribution to journalArticle

35 Scopus citations

Functional networks of aging markers in the glomeruli of IgA nephropathy: A new therapeutic opportunity

Jiang, H., Liang, L., Qin, J., Lu, Y., Li, B., Wang, Y., Lin, C., Zhou, Q., Feng, S., Yip, S. H., Xu, F., Lai, E. Y., Wang, J. & Chen, J., Jun 7 2016, In : Oncotarget. 7, 23, p. 33616-33626 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Generalizations of Markov model to characterize biological sequences

Wang, J. & Hannenhalli, S., Sep 6 2005, In : BMC bioinformatics. 6, 219.

Research output: Contribution to journalArticle

11 Scopus citations

Genetic variants associated with longer telomere length are associated with increased lung cancer risk among never-smoking women in Asia: A report from the female lung cancer consortium in Asia

Machiela, M. J., Hsiung, C. A., Shu, X. O., Seow, W. J., Wang, Z., Matsuo, K., Hong, Y. C., Seow, A., Wu, C., Hosgood, H. D., Chen, K., Wang, J. C., Wen, W., Cawthon, R., Chatterjee, N., Hu, W., Caporaso, N. E., Park, J. Y., Chen, C. J., Kim, Y. H. & 112 others, Kim, Y. T., Landi, M. T., Shen, H., Lawrence, C., Burdett, L., Yeager, M., Chang, I. S., Mitsudomi, T., Kim, H. N., Chang, G. C., Bassig, B. A., Tucker, M., Wei, F., Yin, Z., An, S. J., Qian, B., Lee, V. H. F., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Kim, J. H., Gao, Y. T., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Hutchinson, A., Wang, W. C., Klein, R. J., Chung, C. C., Oh, I. J., Chen, K. Y., Berndt, S. I., Wu, W., Chang, J., Zhang, X. C., Huang, M. S., Zheng, H., Wang, J., Zhao, X., Li, Y., Choi, J. E., Su, W. C., Park, K. H., Sung, S. W., Chen, Y. M., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Pao, W., Kim, Y. C., Yang, T. Y., Xu, J., Guan, P., Tan, W., Su, J., Wang, C. L., Li, H., Sihoe, A. D. L., Zhao, Z., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Kohno, T., Kweon, S. S., Chen, C. Y., Vermeulen, R. C. H., Wu, J., Lim, W. Y., Chen, K. C., Chow, W. H., Ji, B. T., Chan, J. K. C., Chu, M., Li, Y. J., Yokota, J., Li, J., Chen, H., Xiang, Y. B., Yu, C. J., Kunitoh, H., Wu, G., Jin, L., Lo, Y. L., Shiraishi, K., Chen, Y. H., Lin, H. C., Wu, T., Wong, M. P., Wu, Y. L., Yang, P. C., Zhou, B., Shin, M. H., Fraumeni, J. F., Zheng, W., Lin, D., Chanock, S. J., Rothman, N. & Lan, Q., Jul 15 2015, In : International Journal of Cancer. 137, 2, p. 311-319 9 p.

Research output: Contribution to journalArticle

52 Scopus citations

Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia

Lan, Q., Hsiung, C. A., Matsuo, K., Hong, Y. C., Seow, A., Wang, Z., Hosgood, H. D., Chen, K., Wang, J. C., Chatterjee, N., Hu, W., Wong, M. P., Zheng, W., Caporaso, N., Park, J. Y., Chen, C. J., Kim, Y. H., Kim, Y. T., Landi, M. T., Shen, H. & 111 others, Lawrence, C., Burdett, L., Yeager, M., Yuenger, J., Jacobs, K. B., Chang, I. S., Mitsudomi, T., Kim, H. N., Chang, G. C., Bassig, B. A., Tucker, M., Wei, F., Yin, Z., Wu, C., An, S. J., Qian, B., Lee, V. H. F., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Kim, J. H., Gao, Y. T., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Hutchinson, A., Wang, W. C., Klein, R., Chung, C. C., Oh, I. J., Chen, K. Y., Berndt, S. I., He, X., Wu, W., Chang, J., Zhang, X. C., Huang, M. S., Zheng, H., Wang, J., Zhao, X., Li, Y., Choi, J. E., Su, W. C., Park, K. H., Sung, S. W., Shu, X. O., Chen, Y. M., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Pao, W., Kim, Y. C., Yang, T. Y., Xu, J., Guan, P., Tan, W., Su, J., Wang, C. L., Li, H., Sihoe, A. D. L., Zhao, Z., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Kohno, T., Kweon, S. S., Chen, C. Y., Vermeulen, R., Wu, J., Lim, W. Y., Chen, K. C., Chow, W. H., Ji, B. T., Chan, J. K. C., Chu, M., Li, Y. J., Yokota, J., Li, J., Chen, H., Xiang, Y. B., Yu, C. J., Kunitoh, H., Wu, G., Jin, L., Lo, Y. L., Shiraishi, K., Chen, Y. H., Lin, H. C., Wu, T., Wu, Y. L., Yang, P. C., Zhou, B., Shin, M. H., Fraumeni, J. F., Lin, D., Chanock, S. J. & Rothman, N., Dec 2012, In : Nature Genetics. 44, 12, p. 1330-1335 6 p.

Research output: Contribution to journalArticle

198 Scopus citations

GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.

Li, M. J., Wang, L. Y., Xia, Z., Sham, P. C. & Wang, J., Jul 2013, In : Unknown Journal. 41, Web Server issue, p. W150-158

Research output: Contribution to journalArticle

73 Scopus citations

GWAS4D: Multidimensional analysis of context-specific regulatory variant for human complex diseases and traits

Huang, D., Yi, X., Zhang, S., Zheng, Z., Wang, P., Xuan, C., Sham, P. C., Wang, J. & Li, M. J., Jul 2 2018, In : Nucleic acids research. 46, W1, p. W114-W120

Research output: Contribution to journalArticle

9 Scopus citations

GWASdb: A database for human genetic variants identified by genome-wide association studies

Li, M. J., Wang, P., Liu, X., Lim, E. L., Wang, Z., Yeager, M., Wong, M. P., Sham, P. C., Chanock, S. J. & Wang, J., Jan 2012, In : Nucleic acids research. 40, D1, p. D1047-D1054

Research output: Contribution to journalArticle

125 Scopus citations

GWASdb v2: An update database for human genetic variants identified by genome-wide association studies

Li, M. J., Liu, Z., Wang, P., Wong, M. P., Nelson, M. R., Kocher, J. P. A., Yeager, M., Sham, P. C., Chanock, S. J., Xia, Z. & Wang, J., 2016, In : Nucleic acids research. 44, D1, p. D869-D876

Research output: Contribution to journalArticle

77 Scopus citations

Histidine-rich proteins in prokaryotes: Metal homeostasis and environmental habitat-related occurrence

Cheng, T., Xia, W., Wang, P., Huang, F., Wang, J. & Sun, H., Oct 1 2013, In : Metallomics. 5, 10, p. 1423-1429 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Human ocular epithelial cells endogenously expressing SOX2 and OCT4 yield high efficiency of pluripotency reprogramming

Poon, M. W., He, J., Fang, X., Zhang, Z., Wang, W., Wang, J., Qiu, F., Tse, H. F., Li, W., Liu, Z. & Lian, Q., Jul 1 2015, In : PloS one. 10, 7, e0131288.

Research output: Contribution to journalArticle

9 Scopus citations

Hyperglycemia-Induced Protein Kinase C β2 Activation Induces Diastolic Cardiac Dysfunction in Diabetic Rats by Impairing Caveolin-3 Expression and Akt/eNOS Signaling

Lei, S., Li, H., Xu, J., Liu, Y., Gao, X., Wang, J., Ng, K. F. J., Lau, W. B., Ma, X. L., Rodrigues, B., Irwin, M. G. & Xia, Z., Jul 2013, In : Diabetes. 62, 7, p. 2318-2328 11 p.

Research output: Contribution to journalArticle

76 Scopus citations

Improved cell survival and paracrine capacity of human embryonic stem cell-derived mesenchymal stem cells promote therapeutic potential for pulmonary arterial hypertension

Zhang, Y., Liao, S., Yang, M., Liang, X., Poon, M. W., Wong, C. Y., Wang, J., Zhou, Z., Cheong, S. K., Lee, C. N., Tse, H. F. & Lian, Q., Dec 7 2012, In : Cell Transplantation. 21, 10, p. 2225-2239 15 p.

Research output: Contribution to journalArticle

50 Scopus citations

Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

Wang, Z., Zhu, B., Zhang, M., Parikh, H., Jia, J., Chung, C. C., Sampson, J. N., Hoskins, J. W., Hutchinson, A., Burdette, L., Ibrahim, A., Hautman, C., Raj, P. S., Abnet, C. C., Adjei, A. A., Ahlbom, A., Albanes, D., Allen, N. E., Ambrosone, C. B., Aldrich, M. & 331 others, Amiano, P., Amos, C., Andersson, U., Gerald Andriole, G. A., Andrulis, I. L., Arici, C., Arslan, A. A., Austin, M. A., Baris, D., Barkauskas, D. A., Bassig, B. A., Freeman, L. E. B., Berg, C. D., Berndt, S. I., Bertazzi, P. A., Biritwum, R. B., Black, A., Blot, W., Boeing, H., Boffetta, P., Bolton, K., Boutron-Ruault, M. C., Bracci, P. M., Brennan, P., Brinton, L. A., Brotzman, M., Bueno-de-Mesquita, H. B., Buring, J. E., Butler, M. A., Cai, Q., Cancel-Tassin, G., Canzian, F., Cao, G., Caporaso, N. E., Carrato, A., Carreon, T., Carta, A., Chang, G. C., Chang, I. S., Chang-Claude, J., Che, X., Chen, C. J., Chen, C. Y., Chen, C. H., Chen, C., Chen, K. Y., Chen, Y. M., Chokkalingam, A. P., Chu, L. W., Clavel-Chapelon, F., Colditz, G. A., Colt, J. S., Conti, D., Cook, M. B., Cortessis, V. K., Crawford, E. D., Cussenot, O., Davis, F. G., De Vivo, I., Deng, X., Ding, T., Dinney, C. P., Di Stefano, A. L., Diver, W. R., Duell, E. J., Elena, J. W., Fan, J. H., Feigelson, H. S., Feychting, M., Figueroa, J. D., Flanagan, A. M., Fraumeni, J. F., Freedman, N. D., Fridley, B. L., Fuchs, C. S., Gago-Dominguez, M., Gallinger, S., Gao, Y. T., Gapstur, S. M., Garcia-Closas, M., Garcia-Closas, R., Gastier-Foster, J. M., Gaziano, J. M., Gerhard, D. S., Giffen, C. A., Giles, G. G., Gillanders, E. M., Giovannucci, E. L., Goggins, M., Gokgoz, N., Goldstein, A. M., Gonzalez, C., Gorlick, R., Greene, M. H., Gross, M., Grossman, H. B., Grubb, R., Gu, J., Guan, P., Haiman, C. A., Hallmans, G., Hankinson, S. E., Harris, C. C., Hartge, P., Hattinger, C., Hayes, R. B., He, Q., Helman, L., Henderson, B. E., Henriksson, R., Hoffman-Bolton, J., Hohensee, C., Holly, E. A., Hong, Y. C., Hoover, R. N., Dean Hosgood, H., Hsiao, C. F., Hsing, A. W., Hsiung, C. A., Hu, N., Hu, W., Hu, Z., Huang, M. S., Hunter, D. J., Inskip, P. D., Ito, H., Jacobs, E. J., Jacobs, K. B., Jenab, M., Ji, B. T., Johansen, C., Johansson, M., Johnson, A., Kaaks, R., Kamat, A. M., Kamineni, A., Karagas, M., Khanna, C., Khaw, K. T., Kim, C., Kim, I. S., Kim, J. H., Kim, Y. H., Kim, Y. C., Kim, Y. T., Kang, C. H., Jung, Y. J., Kitahara, C. M., Klein, A. P., Klein, R., Kogevinas, M., Koh, W. P., Kohno, T., Kolonel, L. N., Kooperberg, C., Kratz, C. P., Krogh, V., Kunitoh, H., Kurtz, R. C., Kurucu, N., Lan, Q., Lathrop, M., Lau, C. C., Lecanda, F., Lee, K. M., Lee, M. P., Marchand, L. L., Lerner, S. P., Li, D., Liao, L. M., Lim, W. Y., Lin, D., Lin, J., Lindstrom, S., Linet, M. S., Lissowska, J., Liu, J., Ljungberg, B., Lloreta, J., Lu, D., Ma, J., Malats, N., Mannisto, S., Marina, N., Mastrangelo, G., Matsuo, K., McGlynn, K. A., McKean-Cowdin, R., McNeil, L. H., McWilliams, R. R., Melin, B. S., Meltzer, P. S., Mensah, J. E., Miao, X., Michaud, D. S., Mondul, A. M., Moore, L. E., Muir, K., Niwa, S., Olson, S. H., Orr, N., Panico, S., Park, J. Y., Patel, A. V., Patino-Garcia, A., Pavanello, S., Peeters, P. H. M., Peplonska, B., Peters, U., Petersen, G. M., Picci, P., Pike, M. C., Porru, S., Prescott, J., Pu, X., Purdue, M. P., Qiao, Y. L., Rajaraman, P., Riboli, E., Risch, H. A., Rodabough, R. J., Rothman, N., Ruder, A. M., Ryu, J. S., Sanson, M., Schned, A., Schumacher, F. R., Schwartz, A. G., Schwartz, K. L., Schwenn, M., Scotlandi, K., Seow, A., Serra, C., Serra, M., Sesso, H. D., Severi, G., Shen, H., Shen, M., Shete, S., Shiraishi, K., Shu, X. O., Siddiq, A., Sierrasesumaga, L., Sierri, S., Sihoe, A. D. L., Silverman, D. T., Simon, M., Southey, M. C., Spector, L., Spitz, M., Stampfer, M., Stattin, P., Stern, M. C., Stevens, V. L., Stolzenberg-Solomon, R. Z., Stram, D. O., Strom, S. S., Su, W. C., Sund, M., Sung, S. W., Swerdlow, A., Tan, W., Tanaka, H., Tang, W., Tang, Z. Z., Tardon, A., Tay, E., Taylor, P. R., Tettey, Y., Thomas, D. M., Tirabosco, R., Tjonneland, A., Tobias, G. S., Toro, J. R., Travis, R. C., Trichopoulos, D., Troisi, R., Truelove, A., Tsai, Y. H., Tucker, M. A., Tumino, R., Van Den Berg, D., Van Den Eeden, S. K., Vermeulen, R., Vineis, P., Visvanathan, K., Vogel, U., Wang, C., Wang, C., Wang, J., Wang, S. S., Weiderpass, E., Weinstein, S. J., Wentzensen, N., Wheeler, W., White, E., Wiencke, J. K., Wolk, A., Wolpin, B. M., Wong, M. P., Wrensch, M., Wu, C., Wu, T., Wu, X., Wu, Y. L., Wunder, J. S., Xiang, Y. B., Xu, J., Yang, H. P., Yang, P. C., Yatabe, Y., Ye, Y., Yeboah, E. D., Yin, Z., Ying, C., Yu, C. J., Yu, K., Yuan, J. M., Zanetti, K. A., Zeleniuch-Jacquotte, A., Zheng, W., Zhou, B., Mirabello, L., Savage, S. A., Kraft, P., Chanock, S. J., Yeager, M., Landi, M. T., Shi, J., Chatterjee, N. & Amundadottir, L. T., Nov 15 2014, In : Human molecular genetics. 23, 24, p. 6616-6633 18 p.

Research output: Contribution to journalArticle

62 Scopus citations