• 4199 Citations
  • 29 Scopus h-Index
20032020

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Article
2003

Exploring the sequence patterns in the α-helices of proteins

Wang, J. & Feng, J. A., Nov 1 2003, In : Protein Engineering. 16, 11, p. 799-807 9 p.

Research output: Contribution to journalArticle

39 Scopus citations
2004

Predictive models for protein crystallization

Rupp, B. & Wang, J., Nov 2004, In : Methods. 34, 3, p. 390-407 18 p.

Research output: Contribution to journalArticle

61 Scopus citations
2005

Generalizations of Markov model to characterize biological sequences

Wang, J. & Hannenhalli, S., Sep 6 2005, In : BMC bioinformatics. 6, 219.

Research output: Contribution to journalArticle

11 Scopus citations

NdPASA: A pairwise sequence alignment server for distantly related proteins

Li, W., Wang, J. & Feng, J. A., Oct 1 2005, In : Bioinformatics. 21, 19, p. 3803-3805 3 p.

Research output: Contribution to journalArticle

2 Scopus citations
10 Scopus citations
2006

A mammalian promoter model links cis elements to genetic networks

Wang, J. & Hannenhalli, S., Aug 18 2006, In : Biochemical and Biophysical Research Communications. 347, 1, p. 166-177 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Search for basonuclin target genes

Wang, J., Zhang, S., Schultz, R. M. & Tseng, H., Oct 6 2006, In : Biochemical and Biophysical Research Communications. 348, 4, p. 1261-1271 11 p.

Research output: Contribution to journalArticle

28 Scopus citations

Transcriptional genomics associates FOX transcription factors with human heart failure

Hannenhalli, S., Putt, M. E., Gilmore, J. M., Wang, J., Parmacek, M. S., Epstein, J. A., Morrisey, E. E., Margulies, K. B. & Cappola, T. P., Sep 1 2006, In : Circulation. 114, 12, p. 1269-1276 8 p.

Research output: Contribution to journalArticle

128 Scopus citations
2007

A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer

Hunter, D. J., Kraft, P., Jacobs, K. B., Cox, D. G., Yeager, M., Hankinson, S. E., Wacholder, S., Wang, Z., Welch, R., Hutchinson, A., Wang, J., Yu, K., Chatterjee, N., Orr, N., Willett, W. C., Colditz, G. A., Ziegler, R. G., Berg, C. D., Buys, S. S., McCarty, C. A. & 10 others, Feigelson, H. S., Calle, E. E., Thun, M. J., Hayes, R. B., Tucker, M., Gerhard, D. S., Fraumeni, J. F., Hoover, R. N., Thomas, G. & Chanock, S. J., Jul 1 2007, In : Nature Genetics. 39, 7, p. 870-874 5 p.

Research output: Contribution to journalArticle

1176 Scopus citations

Basonuclin regulates a subset of ribosomal RNA genes in HaCAT cells

Zhang, S., Wang, J. & Tseng, H., Sep 19 2007, In : PloS one. 2, 9, e902.

Research output: Contribution to journalArticle

15 Scopus citations

MetaProm: A neural network based meta-predictor for alternative human promoter prediction

Wang, J., Ungar, L. H., Tseng, H. & Hannenhalli, S., Oct 17 2007, In : BMC genomics. 8, 374.

Research output: Contribution to journalArticle

21 Scopus citations

Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation

Vardhanabhuti, S., Wang, J. & Hannenhalli, S., May 2007, In : Nucleic acids research. 35, 10, p. 3203-3213 11 p.

Research output: Contribution to journalArticle

44 Scopus citations
2008

Mouse ribosomal RNA genes contain multiple differentially regulated variants

Tseng, H., Chou, W., Wang, J., Zhang, X., Zhang, S. & Schultz, R. M., Mar 26 2008, In : PloS one. 3, 3, e1843.

Research output: Contribution to journalArticle

28 Scopus citations
2009

PU.1 can recruit BCL6 to DNA to repress gene expression in germinal center B cells

Wei, F., Zaprazna, K., Wang, J. & Atchison, M. L., Sep 1 2009, In : Molecular and cellular biology. 29, 17, p. 4612-4622 11 p.

Research output: Contribution to journalArticle

25 Scopus citations
2010

FastPval: A fast and memory efficient program to calculate very low P-values from empirical distribution

Li, M. J., Sham, P. C. & Wang, J., Nov 2010, In : Bioinformatics. 26, 22, p. 2897-2899 3 p.

Research output: Contribution to journalArticle

16 Scopus citations
2011

Acacetin causes a frequency- and use-dependent blockade of hKv1.5 channels by binding to the S6 domain

Wu, H. J., Wu, W., Sun, H. Y., Qin, G. W., Wang, H. B., Wang, P., Yalamanchili, H. K., Wang, J., Tse, H. F., Lau, C. P., Vanhoutte, P. M. & Li, G. R., Dec 1 2011, In : Journal of Molecular and Cellular Cardiology. 51, 6, p. 966-973 8 p.

Research output: Contribution to journalArticle

28 Scopus citations

An SNP selection strategy identified IL-22 associating with susceptibility to tuberculosis in Chinese

Zhang, G., Chen, X., Chan, L., Zhang, M., Zhu, B., Wang, L., Zhu, X., Zhang, J., Zhou, B. & Wang, J., Dec 1 2011, In : Scientific reports. 1, 20.

Research output: Contribution to journalArticle

30 Scopus citations

ChIP-Array: Combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor

Qin, J., Li, M. J., Wang, P., Zhang, M. Q. & Wang, J., Jul 1 2011, In : Nucleic acids research. 39, SUPPL. 2, p. W430-W436

Research output: Contribution to journalArticle

45 Scopus citations

Correlated evolution of transcription factors and their binding sites

Yang, S., Yalamanchili, H. K., Li, X., Yao, K. M., Sham, P. C., Zhang, M. Q. & Wang, J., Nov 1 2011, In : Bioinformatics. 27, 21, p. 2972-2978 7 p., btr503.

Research output: Contribution to journalArticle

17 Scopus citations

EpiRegNet: Constructing epigenetic regulatory network from high throughput gene expression data for humans

Wang, L. Y., Wang, P., Li, M. J., Qin, J., Wang, X., Zhang, M. Q. & Wang, J., Jan 1 2011, In : Epigenetics. 6, 12, p. 1505-1512 8 p.

Research output: Contribution to journalArticle

16 Scopus citations
2012

A fast and accurate SNP detection algorithm for next-generation sequencing data

Xu, F., Wang, W., Wang, P., Jun Li, M., Chung Sham, P. & Wang, J., Dec 1 2012, In : Nature communications. 3, 1258.

Research output: Contribution to journalArticle

33 Scopus citations

A functional single-nucleotide polymorphism in the promoter of the gene encoding interleukin 6 is associated with susceptibility to tuberculosis

Zhang, G., Zhou, B., Wang, W., Zhang, M., Zhao, Y., Wang, Z., Yang, L., Zhai, J., Feng, C. G., Wang, J. & Chen, X., Jun 1 2012, In : Journal of Infectious Diseases. 205, 11, p. 1697-1704 8 p.

Research output: Contribution to journalArticle

34 Scopus citations

A novel neural response algorithm for protein function prediction

Yalamanchili, H. K., Xiao, Q. W. & Wang, J., Jul 16 2012, In : BMC Systems Biology. 6, SUPPL.1, S19.

Research output: Contribution to journalArticle

4 Scopus citations

Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia

Lan, Q., Hsiung, C. A., Matsuo, K., Hong, Y. C., Seow, A., Wang, Z., Hosgood, H. D., Chen, K., Wang, J. C., Chatterjee, N., Hu, W., Wong, M. P., Zheng, W., Caporaso, N., Park, J. Y., Chen, C. J., Kim, Y. H., Kim, Y. T., Landi, M. T., Shen, H. & 111 others, Lawrence, C., Burdett, L., Yeager, M., Yuenger, J., Jacobs, K. B., Chang, I. S., Mitsudomi, T., Kim, H. N., Chang, G. C., Bassig, B. A., Tucker, M., Wei, F., Yin, Z., Wu, C., An, S. J., Qian, B., Lee, V. H. F., Lu, D., Liu, J., Jeon, H. S., Hsiao, C. F., Sung, J. S., Kim, J. H., Gao, Y. T., Tsai, Y. H., Jung, Y. J., Guo, H., Hu, Z., Hutchinson, A., Wang, W. C., Klein, R., Chung, C. C., Oh, I. J., Chen, K. Y., Berndt, S. I., He, X., Wu, W., Chang, J., Zhang, X. C., Huang, M. S., Zheng, H., Wang, J., Zhao, X., Li, Y., Choi, J. E., Su, W. C., Park, K. H., Sung, S. W., Shu, X. O., Chen, Y. M., Liu, L., Kang, C. H., Hu, L., Chen, C. H., Pao, W., Kim, Y. C., Yang, T. Y., Xu, J., Guan, P., Tan, W., Su, J., Wang, C. L., Li, H., Sihoe, A. D. L., Zhao, Z., Chen, Y., Choi, Y. Y., Hung, J. Y., Kim, J. S., Yoon, H. I., Cai, Q., Lin, C. C., Park, I. K., Xu, P., Dong, J., Kim, C., He, Q., Perng, R. P., Kohno, T., Kweon, S. S., Chen, C. Y., Vermeulen, R., Wu, J., Lim, W. Y., Chen, K. C., Chow, W. H., Ji, B. T., Chan, J. K. C., Chu, M., Li, Y. J., Yokota, J., Li, J., Chen, H., Xiang, Y. B., Yu, C. J., Kunitoh, H., Wu, G., Jin, L., Lo, Y. L., Shiraishi, K., Chen, Y. H., Lin, H. C., Wu, T., Wu, Y. L., Yang, P. C., Zhou, B., Shin, M. H., Fraumeni, J. F., Lin, D., Chanock, S. J. & Rothman, N., Dec 2012, In : Nature Genetics. 44, 12, p. 1330-1335 6 p.

Research output: Contribution to journalArticle

198 Scopus citations

GWASdb: A database for human genetic variants identified by genome-wide association studies

Li, M. J., Wang, P., Liu, X., Lim, E. L., Wang, Z., Yeager, M., Wong, M. P., Sham, P. C., Chanock, S. J. & Wang, J., Jan 2012, In : Nucleic acids research. 40, D1, p. D1047-D1054

Research output: Contribution to journalArticle

125 Scopus citations

Improved cell survival and paracrine capacity of human embryonic stem cell-derived mesenchymal stem cells promote therapeutic potential for pulmonary arterial hypertension

Zhang, Y., Liao, S., Yang, M., Liang, X., Poon, M. W., Wong, C. Y., Wang, J., Zhou, Z., Cheong, S. K., Lee, C. N., Tse, H. F. & Lian, Q., Dec 7 2012, In : Cell Transplantation. 21, 10, p. 2225-2239 15 p.

Research output: Contribution to journalArticle

50 Scopus citations
2013

GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.

Li, M. J., Wang, L. Y., Xia, Z., Sham, P. C. & Wang, J., Jul 2013, In : Unknown Journal. 41, Web Server issue, p. W150-158

Research output: Contribution to journalArticle

73 Scopus citations

Histidine-rich proteins in prokaryotes: Metal homeostasis and environmental habitat-related occurrence

Cheng, T., Xia, W., Wang, P., Huang, F., Wang, J. & Sun, H., Oct 1 2013, In : Metallomics. 5, 10, p. 1423-1429 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Hyperglycemia-Induced Protein Kinase C β2 Activation Induces Diastolic Cardiac Dysfunction in Diabetic Rats by Impairing Caveolin-3 Expression and Akt/eNOS Signaling

Lei, S., Li, H., Xu, J., Liu, Y., Gao, X., Wang, J., Ng, K. F. J., Lau, W. B., Ma, X. L., Rodrigues, B., Irwin, M. G. & Xia, Z., Jul 2013, In : Diabetes. 62, 7, p. 2318-2328 11 p.

Research output: Contribution to journalArticle

76 Scopus citations

Inference of Gene-Phenotype Associations via Protein-Protein Interaction and Orthology

Wang, P., Lai, W. F., Li, M. J., Xu, F., Yalamanchili, H. K., Lovell-Badge, R. & Wang, J., Oct 23 2013, In : PloS one. 8, 10, e77478.

Research output: Contribution to journalArticle

6 Scopus citations

Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant

Song, Y. Q., Karasugi, T., Cheung, K. M. C., Chiba, K., Ho, D. W. H., Miyake, A., Kao, P. Y. P., Sze, K. L., Yee, A., Takahashi, A., Kawaguchi, Y., Mikami, Y., Matsumoto, M., Togawa, D., Kanayama, M., Shi, D., Dai, J., Jiang, Q., Wu, C., Tian, W. & 24 others, Wang, N., Leong, J. C. Y., Luk, K. D. K., Yip, S. P., Cherny, S. S., Wang, J., Mundlos, S., Kelempisioti, A., Eskola, P. J., Männikkö, M., Mäkelä, P., Karppinen, J., Järvelin, M. R., O'Reilly, P. F., Kubo, M., Kimura, T., Kubo, T., Toyama, Y., Mizuta, H., Cheah, K. S. E., Tsunoda, T., Sham, P. C., Ikegawa, S. & Chan, D., Nov 1 2013, In : Journal of Clinical Investigation. 123, 11, p. 4909-4917 9 p.

Research output: Contribution to journalArticle

60 Scopus citations

Lung cancer tumorigenicity and drug resistance are maintained through ALDHhiCD44hi tumor initiating cells

Liu, J., Xiao, Z., Wong, S. K. M., Tin, V. P. C., Ho, K. Y., Wang, J., Sham, M. H. & Wong, M. P., Oct 1 2013, In : Oncotarget. 4, 10, p. 1686-1699 14 p.

Research output: Contribution to journalArticle

52 Scopus citations

N-Acetylcysteine and allopurinol up-regulated the Jak/STAT3 and PI3K/Akt pathways via adiponectin and attenuated myocardial postischemic injury in diabetes

Wang, T., Mao, X., Li, H., Qiao, S., Xu, A., Wang, J., Lei, S., Liu, Z., Ng, K. F. J., Wong, G. T., Vanhoutte, P. M., Irwin, M. G. & Xia, Z., Jan 1 2013, In : Free Radical Biology and Medicine. 63, p. 291-303 13 p.

Research output: Contribution to journalArticle

65 Scopus citations

ProteoMirExpress: Inferring MicroRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data

Qin, J., Li, M. J., Wang, P., Wong, N. S., Wong, M. P., Xia, Z., Tsao, G. S. W., Zhang, M. Q. & Wang, J., Nov 1 2013, In : Molecular and Cellular Proteomics. 12, 11, p. 3379-3387 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Susceptibility to myocardial ischemia reperfusion injury at early stage of type 1 diabetes in rats

Li, H., Liu, Z., Wang, J., Wong, G. T., Cheung, C. W., Zhang, L., Chen, C., Xia, Z. & Irwin, M. G., Sep 2013, In : Cardiovascular diabetology. 12, 1, 133.

Research output: Contribution to journalArticle

52 Scopus citations

YY1 controls Igκ repertoire and B-cell development, and localizes with condensin on the Igκ locus

Pan, X., Papasani, M., Hao, Y., Calamito, M., Wei, F., Quinn, W. J., Basu, A., Wang, J., Hodawadekar, S., Zaprazna, K., Liu, H., Shi, Y., Allman, D., Cancro, M. & Atchison, M. L., Apr 17 2013, In : EMBO Journal. 32, 8, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

35 Scopus citations
2014

CMGRN: A web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data

Guan, D., Shao, J., Deng, Y., Wang, P., Zhao, Z., Liang, Y., Wang, J. & Yan, B., Jan 1 2014, In : Bioinformatics. 30, 8, p. 1190-1192 3 p.

Research output: Contribution to journalArticle

18 Scopus citations

CTCF controls HOXA cluster silencing and mediates PRC2-repressive higher-order chromatin structure in NT2/D1 cells

Xu, M., Zhao, G. N., Lv, X., Liu, G., Wang, L. Y., Hao, D. L., Wang, J., Liu, D. P. & Liang, C. C., Jan 1 2014, In : Molecular and cellular biology. 34, 20, p. 3867-3879 13 p.

Research output: Contribution to journalArticle

20 Scopus citations

DbPSHP: A database of recent positive selection across human populations

Li, M. J., Wang, L. Y., Xia, Z., Wong, M. P., Sham, P. C. & Wang, J., Jan 1 2014, In : Nucleic acids research. 42, D1, p. D910-D916

Research output: Contribution to journalArticle

29 Scopus citations

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment

Yalamanchili, H. K., Yan, B., Li, M. J., Qin, J., Zhao, Z., Chin, F. Y. L. & Wang, J., Feb 1 2014, In : Bioinformatics. 30, 3, p. 377-383 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Exploring the function of genetic variants in the non-coding genomic regions: Approaches for identifying human regulatory variants affecting gene expression

Li, M. J., Yan, B., Sham, P. C. & Wang, J., Aug 2 2014, In : Briefings in bioinformatics. 16, 3, p. 393-412 20 p., bbu018.

Research output: Contribution to journalArticle

25 Scopus citations

FaSD-somatic: A fast and accurate somatic SNV detection algorithm for cancer genome sequencing data

Wang, W., Wang, P., Xu, F., Luo, R., Wong, M. P., Lam, T. W. & Wang, J., Sep 1 2014, In : Bioinformatics. 30, 17, p. 2498-2500 3 p.

Research output: Contribution to journalArticle

10 Scopus citations

Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

Wang, Z., Zhu, B., Zhang, M., Parikh, H., Jia, J., Chung, C. C., Sampson, J. N., Hoskins, J. W., Hutchinson, A., Burdette, L., Ibrahim, A., Hautman, C., Raj, P. S., Abnet, C. C., Adjei, A. A., Ahlbom, A., Albanes, D., Allen, N. E., Ambrosone, C. B., Aldrich, M. & 331 others, Amiano, P., Amos, C., Andersson, U., Gerald Andriole, G. A., Andrulis, I. L., Arici, C., Arslan, A. A., Austin, M. A., Baris, D., Barkauskas, D. A., Bassig, B. A., Freeman, L. E. B., Berg, C. D., Berndt, S. I., Bertazzi, P. A., Biritwum, R. B., Black, A., Blot, W., Boeing, H., Boffetta, P., Bolton, K., Boutron-Ruault, M. C., Bracci, P. M., Brennan, P., Brinton, L. A., Brotzman, M., Bueno-de-Mesquita, H. B., Buring, J. E., Butler, M. A., Cai, Q., Cancel-Tassin, G., Canzian, F., Cao, G., Caporaso, N. E., Carrato, A., Carreon, T., Carta, A., Chang, G. C., Chang, I. S., Chang-Claude, J., Che, X., Chen, C. J., Chen, C. Y., Chen, C. H., Chen, C., Chen, K. Y., Chen, Y. M., Chokkalingam, A. P., Chu, L. W., Clavel-Chapelon, F., Colditz, G. A., Colt, J. S., Conti, D., Cook, M. B., Cortessis, V. K., Crawford, E. D., Cussenot, O., Davis, F. G., De Vivo, I., Deng, X., Ding, T., Dinney, C. P., Di Stefano, A. L., Diver, W. R., Duell, E. J., Elena, J. W., Fan, J. H., Feigelson, H. S., Feychting, M., Figueroa, J. D., Flanagan, A. M., Fraumeni, J. F., Freedman, N. D., Fridley, B. L., Fuchs, C. S., Gago-Dominguez, M., Gallinger, S., Gao, Y. T., Gapstur, S. M., Garcia-Closas, M., Garcia-Closas, R., Gastier-Foster, J. M., Gaziano, J. M., Gerhard, D. S., Giffen, C. A., Giles, G. G., Gillanders, E. M., Giovannucci, E. L., Goggins, M., Gokgoz, N., Goldstein, A. M., Gonzalez, C., Gorlick, R., Greene, M. H., Gross, M., Grossman, H. B., Grubb, R., Gu, J., Guan, P., Haiman, C. A., Hallmans, G., Hankinson, S. E., Harris, C. C., Hartge, P., Hattinger, C., Hayes, R. B., He, Q., Helman, L., Henderson, B. E., Henriksson, R., Hoffman-Bolton, J., Hohensee, C., Holly, E. A., Hong, Y. C., Hoover, R. N., Dean Hosgood, H., Hsiao, C. F., Hsing, A. W., Hsiung, C. A., Hu, N., Hu, W., Hu, Z., Huang, M. S., Hunter, D. J., Inskip, P. D., Ito, H., Jacobs, E. J., Jacobs, K. B., Jenab, M., Ji, B. T., Johansen, C., Johansson, M., Johnson, A., Kaaks, R., Kamat, A. M., Kamineni, A., Karagas, M., Khanna, C., Khaw, K. T., Kim, C., Kim, I. S., Kim, J. H., Kim, Y. H., Kim, Y. C., Kim, Y. T., Kang, C. H., Jung, Y. J., Kitahara, C. M., Klein, A. P., Klein, R., Kogevinas, M., Koh, W. P., Kohno, T., Kolonel, L. N., Kooperberg, C., Kratz, C. P., Krogh, V., Kunitoh, H., Kurtz, R. C., Kurucu, N., Lan, Q., Lathrop, M., Lau, C. C., Lecanda, F., Lee, K. M., Lee, M. P., Marchand, L. L., Lerner, S. P., Li, D., Liao, L. M., Lim, W. Y., Lin, D., Lin, J., Lindstrom, S., Linet, M. S., Lissowska, J., Liu, J., Ljungberg, B., Lloreta, J., Lu, D., Ma, J., Malats, N., Mannisto, S., Marina, N., Mastrangelo, G., Matsuo, K., McGlynn, K. A., McKean-Cowdin, R., McNeil, L. H., McWilliams, R. R., Melin, B. S., Meltzer, P. S., Mensah, J. E., Miao, X., Michaud, D. S., Mondul, A. M., Moore, L. E., Muir, K., Niwa, S., Olson, S. H., Orr, N., Panico, S., Park, J. Y., Patel, A. V., Patino-Garcia, A., Pavanello, S., Peeters, P. H. M., Peplonska, B., Peters, U., Petersen, G. M., Picci, P., Pike, M. C., Porru, S., Prescott, J., Pu, X., Purdue, M. P., Qiao, Y. L., Rajaraman, P., Riboli, E., Risch, H. A., Rodabough, R. J., Rothman, N., Ruder, A. M., Ryu, J. S., Sanson, M., Schned, A., Schumacher, F. R., Schwartz, A. G., Schwartz, K. L., Schwenn, M., Scotlandi, K., Seow, A., Serra, C., Serra, M., Sesso, H. D., Severi, G., Shen, H., Shen, M., Shete, S., Shiraishi, K., Shu, X. O., Siddiq, A., Sierrasesumaga, L., Sierri, S., Sihoe, A. D. L., Silverman, D. T., Simon, M., Southey, M. C., Spector, L., Spitz, M., Stampfer, M., Stattin, P., Stern, M. C., Stevens, V. L., Stolzenberg-Solomon, R. Z., Stram, D. O., Strom, S. S., Su, W. C., Sund, M., Sung, S. W., Swerdlow, A., Tan, W., Tanaka, H., Tang, W., Tang, Z. Z., Tardon, A., Tay, E., Taylor, P. R., Tettey, Y., Thomas, D. M., Tirabosco, R., Tjonneland, A., Tobias, G. S., Toro, J. R., Travis, R. C., Trichopoulos, D., Troisi, R., Truelove, A., Tsai, Y. H., Tucker, M. A., Tumino, R., Van Den Berg, D., Van Den Eeden, S. K., Vermeulen, R., Vineis, P., Visvanathan, K., Vogel, U., Wang, C., Wang, C., Wang, J., Wang, S. S., Weiderpass, E., Weinstein, S. J., Wentzensen, N., Wheeler, W., White, E., Wiencke, J. K., Wolk, A., Wolpin, B. M., Wong, M. P., Wrensch, M., Wu, C., Wu, T., Wu, X., Wu, Y. L., Wunder, J. S., Xiang, Y. B., Xu, J., Yang, H. P., Yang, P. C., Yatabe, Y., Ye, Y., Yeboah, E. D., Yin, Z., Ying, C., Yu, C. J., Yu, K., Yuan, J. M., Zanetti, K. A., Zeleniuch-Jacquotte, A., Zheng, W., Zhou, B., Mirabello, L., Savage, S. A., Kraft, P., Chanock, S. J., Yeager, M., Landi, M. T., Shi, J., Chatterjee, N. & Amundadottir, L. T., Nov 15 2014, In : Human molecular genetics. 23, 24, p. 6616-6633 18 p.

Research output: Contribution to journalArticle

62 Scopus citations

Inferring gene regulatory networks by integrating ChIP-seq/chip and transcriptome data via LASSO-type regularization methods

Qin, J., Hu, Y., Xu, F., Yalamanchili, H. K. & Wang, J., Jun 1 2014, In : Methods. 67, 3, p. 294-303 10 p.

Research output: Contribution to journalArticle

25 Scopus citations

Inhibition of KAP1 enhances hypoxia-induced Kaposi's sarcoma-associated herpesvirus reactivation through RBP-Jk

Zhang, L., Zhu, C., Guo, Y., Wei, F., Lu, J., Qin, J., Banerjee, S., Wang, J., Shang, H., Verma, S. C., Yuan, Z., Robertson, E. S. & Cai, Q., Jun 2014, In : Journal of virology. 88, 12, p. 6873-6884 12 p.

Research output: Contribution to journalArticle

34 Scopus citations

PTHGRN: Unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data

Guan, D., Shao, J., Zhao, Z., Wang, P., Qin, J., Deng, Y., Boheler, K. R., Wang, J. & Yan, B., Jul 1 2014, In : Nucleic acids research. 42, W1, p. W130-W136

Research output: Contribution to journalArticle

16 Scopus citations

SpliceNet: Recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples

Yalamanchili, H. K., Li, Z., Wang, P., Wong, M. P., Yao, J. & Wang, J., 2014, In : Nucleic acids research. 42, 15, p. e121

Research output: Contribution to journalArticle

12 Scopus citations

Vitamin D inhibits cox-2 expression and inflammatory response by targeting thioesterase superfamily member 4

Wang, Q., He, Y., Shen, Y., Zhang, Q., Chen, D., Zuo, C., Qin, J., Wang, H., Wang, J. & Yu, Y., Apr 25 2014, In : Journal of Biological Chemistry. 289, 17, p. 11681-11694 14 p.

Research output: Contribution to journalArticle

60 Scopus citations
2015

Analysis of heritability and shared heritability based on genome-wide association studies for thirteen cancer types

Sampson, J. N., Wheeler, W. A., Yeager, M., Panagiotou, O., Wang, Z., Berndt, S. I., Lan, Q., Abnet, C. C., Amundadottir, L. T., Figueroa, J. D., Landi, M. T., Mirabello, L., Savage, S. A., Taylor, P. R., De Vivo, I., McGlynn, K. A., Purdue, M. P., Rajaraman, P., Adami, H. O., Ahlbom, A. & 388 others, Albanes, D., Amary, M. F., An, S. J., Andersson, U., Andriole, G., Andrulis, I. L., Angelucci, E., Ansell, S. M., Arici, C., Armstrong, B. K., Arslan, A. A., Austin, M. A., Baris, D., Barkauskas, D. A., Bassig, B. A., Becker, N., Benavente, Y., Benhamou, S., Berg, C., Van Den Berg, D., Bernstein, L., Bertrand, K. A., Birmann, B. M., Black, A., Boeing, H., Boffetta, P., Boutron-Ruault, M. C., Bracci, P. M., Brinton, L., Brooks-Wilson, A. R., Bueno-De-Mesquita, H. B., Burdett, L., Buring, J., Butler, M. A., Cai, Q., Cancel-Tassin, G., Canzian, F., Carrato, A., Carreon, T., Carta, A., Chan, J. K. C., Chang, E. T., Chang, G. C., Chang, I. S., Chang, J., Chang-Claude, J., Chen, C. J., Chen, C. Y., Chen, C., Chen, C. H., Chen, C., Chen, H., Chen, K., Chen, K. Y., Chen, K. C., Chen, Y., Chen, Y. H., Chen, Y. S., Chen, Y. M., Chien, L. H., Chirlaque, M. D., Choi, J. E., Choi, Y. Y., Chow, W. H., Chung, C. C., Clavel, J., Clavel-Chapelon, F., Cocco, P., Colt, J. S., Comperat, E., Conde, L., Connors, J. M., Conti, D., Cortessis, V. K., Cotterchio, M., Cozen, W., Crouch, S., Crous-Bou, M., Cussenot, O., Davis, F. G., Ding, T., Diver, W. R., Dorronsoro, M., Dossus, L., Duell, E. J., Ennas, M. G., Erickson, R. L., Feychting, M., Flanagan, A. M., Foretova, L., Fraumeni, J. F., Freedman, N. D., Freeman, L. E. B., Fuchs, C., Gago-Dominguez, M., Gallinger, S., Gao, Y. T., Gapstur, S. M., Garcia-Closas, M., García-Closas, R., Gascoyne, R. D., Gastier-Foster, J., Gaudet, M. M., Gaziano, J. M., Giffen, C., Giles, G. G., Giovannucci, E., Glimelius, B., Goggins, M., Gokgoz, N., Goldstein, A. M., Gorlick, R., Gross, M., Grubb, R., Gu, J., Guan, P., Gunter, M., Guo, H., Habermann, T. M., Haiman, C. A., Halai, D., Hallmans, G., Hassan, M., Hattinger, C., He, Q., He, X., Helzlsouer, K., Henderson, B., Henriksson, R., Hjalgrim, H., Hoffman-Bolton, J., Hohensee, C., Holford, T. R., Holly, E. A., Hong, Y. C., Hoover, R. N., Horn-Ross, P. L., Hosain, G. M. M., Hosgood, H. D., Hsiao, C. F., Hu, N., Hu, W., Hu, Z., Huang, M. S., Huerta, J. M., Hung, J. Y., Hutchinson, A., Inskip, P. D., Jackson, R. D., Jacobs, E. J., Jenab, M., Jeon, H. S., Ji, B. T., Jin, G., Jin, L., Johansen, C., Johnson, A., Jung, Y. J., Kaaks, R., Kamineni, A., Kane, E., Kang, C. H., Karagas, M. R., Kelly, R. S., Khaw, K. T., Kim, C., Kim, H. N., Kim, J. H., Kim, J. S., Kim, Y. H., Kim, Y. T., Kim, Y. C., Kitahara, C. M., Klein, A. P., Klein, R. J., Kogevinas, M., Kohno, T., Kolonel, L. N., Kooperberg, C., Kricker, A., Krogh, V., Kunitoh, H., Kurtz, R. C., Kweon, S. S., La Croix, A., Lawrence, C., Lecanda, F., Lee, V. H. F., Li, D., Li, H., Li, J., Li, Y. J., Li, Y., Liao, L. M., Liebow, M., Lightfoot, T., Lim, W. Y., Lin, C. C., Lin, D., Lindstrom, S., Linet, M. S., Link, B. K., Liu, C., Liu, J., Liu, L., Ljungberg, B., Lloreta, J., Di Lollo, S., Lu, D., Lund, E., Malats, N., Mannisto, S., Marchand, L. L., Marina, N., Masala, G., Mastrangelo, G., Matsuo, K., Maynadie, M., McKay, J., McKean-Cowdin, R., Melbye, M., Melin, B. S., Michaud, D. S., Mitsudomi, T., Monnereau, A., Montalvan, R., Moore, L. E., Mortensen, L. M., Nieters, A., North, K. E., Novak, A. J., Oberg, A. L., Offit, K., Oh, I. J., Olson, S. H., Palli, D., Pao, W., Park, I. K., Park, J. Y., Park, K. H., Patiño-Garcia, A., Pavanello, S., Peeters, P. H. M., Perng, R. P., Peters, U., Petersen, G. M., Picci, P., Pike, M. C., Porru, S., Prescott, J., Prokunina-Olsson, L., Qian, B., Qiao, Y. L., Rais, M., Riboli, E., Riby, J., Risch, H. A., Rizzato, C., Rodabough, R., Roman, E., Roupret, M., Ruder, A. M., De Sanjose, S., Scelo, G., Schned, A., Schumacher, F., Schwartz, K., Schwenn, M., Scotlandi, K., Seow, A., Serra, C., Serra, M., Sesso, H. D., Setiawan, V. W., Severi, G., Severson, R. K., Shanafelt, T. D., Shen, H., Shen, W., Shin, M. H., Shiraishi, K., Shu, X. O., Siddiq, A., Sierrasesúmaga, L., Sihoe, A. D. L., Skibola, C. F., Smith, A., Smith, M. T., Southey, M. C., Spinelli, J. J., Staines, A., Stampfer, M., Stern, M. C., Stevens, V. L., Stolzenberg-Solomon, R. S., Su, J., Su, W. C., Sund, M., Sung, J. S., Sung, S. W., Tan, W., Tang, W., Tardón, A., Thomas, D., Thompson, C. A., Tinker, L. F., Tirabosco, R., Tjønneland, A., Travis, R. C., Trichopoulos, D., Tsai, F. Y., Tsai, Y. H., Tucker, M., Turner, J., Vajdic, C. M., Vermeulen, R. C. H., Villano, D. J., Vineis, P., Virtamo, J., Visvanathan, K., Wactawski-Wende, J., Wang, C., Wang, C. L., Wang, J. C., Wang, J., Wei, F., Weiderpass, E., Weiner, G. J., Weinstein, S., Wentzensen, N., White, E., Witzig, T. E., Wolpin, B. M., Wong, M. P., Wu, C., Wu, G., Wu, J., Wu, T., Wu, W., Wu, X., Wu, Y. L., Wunder, J. S., Xiang, Y. B., Xu, J., Xu, P., Yang, P. C., Yang, T. Y., Ye, Y., Yin, Z., Yokota, J., Yoon, H. I., Yu, C. J., Yu, H., Yu, K., Yuan, J. M., Zelenetz, A., Zeleniuch-Jacquotte, A., Zhang, X. C., Zhang, Y., Zhao, X., Zhao, Z., Zheng, H., Zheng, T., Zheng, W., Zhou, B., Zhu, M., Zucca, M., Boca, S. M., Cerhan, J. R., Ferri, G. M., Hartge, P., Hsiung, C. A., Magnani, C., Miligi, L., Morton, L. M., Smedby, K. E., Teras, L. R., Vijai, J., Wang, S. S., Brennan, P., Caporaso, N. E., Hunter, D. J., Kraft, P., Rothman, N., Silverman, D. T., Slager, S. L., Chanock, S. J. & Chatterjee, N., 2015, In : Journal of the National Cancer Institute. 107, 12

Research output: Contribution to journalArticle

71 Scopus citations

Bayesian detection of embryonic gene expression onset in C. elegans

Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In : Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

Research output: Contribution to journalArticle

3 Scopus citations