Rochester, MN

Research Output 1961 2020

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Conference contribution
1 Citation (Scopus)

Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics

Breitenstein, M. K., Simon, G., Ryu, E., Armasu, S. M., Weinshilboum, R. M., Wang, L. M. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 210. p. 914-918 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metformin
Medical problems
Genes
Proteins
Pharmacogenetics
31 Citations (Scopus)

Using EHRs and Machine Learning for Heart Failure Survival Analysis

Panahiazar, M., Taslimitehrani, V., Pereira, N. L. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 40-44 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Survival Analysis
Failure analysis
Learning systems
Heart Failure
12 Citations (Scopus)

Using EHRs for Heart Failure Therapy Recommendation Using Multidimensional Patient Similarity Analytics

Panahiazar, M., Taslimitehrani, V., Pereira, N. L. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 210. p. 369-373 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Heart Failure
Health
Therapeutics
Learning systems
3 Citations (Scopus)

Using functional MRI alone for localization in focal epilepsy

Zhang, C. H., Lu, Y., Brinkmann, B., Welker, K., Worrell, G. A. & He, B., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 730-733 4 p. 6943694

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Partial Epilepsy
Magnetic Resonance Imaging
Epilepsy
Healthy Volunteers
Independent component analysis
6 Citations (Scopus)

Using human phenotype ontology for phenotypic analysis of clinical notes

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Phenotype
Vocabulary
Genotype
17 Citations (Scopus)

Using linked data for mining drug-drug interactions in electronic health records

Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 682-686 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Drug therapy
Data Mining
Electronic Health Records
Drug Interactions
2 Citations (Scopus)

Using magnetic resonance elastography to assess the dynamic mechanical properties of cartilage

Lopez, O., Amrami, K., Rossman, P. & Ehman, R. L., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Amini, A. A. & Mandura, A. (eds.). Vol. 5369. p. 51-61 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cartilage
Cartilage
Magnetic resonance
magnetic resonance
mechanical properties

Using magnetic resonance microscopy to assess the osteogenesis in porous hydrogels

Mishra, P., Dadsetan, M., Rajagopalan, S., Hefferan, T. E., Yaszemski, M. J. & Macura, S. I., 2007, Materials Research Society Symposium Proceedings. Vol. 984. p. 33-38 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hydrogels
Magnetic resonance
Microscopic examination
Bone
Scaffolds

Using multiple diffusion MRI measures to predict alzheimer’s disease with a TV-L1 prior

The Alzheimer’S Disease Neuroimaging Initiative (ADNI), 2017, Computational Diffusion MRI - MICCAI Workshop. Springer Heidelberg, Vol. Part F2. p. 157-166 10 p. (Mathematics and Visualization; vol. Part F2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alzheimer's Disease
Magnetic resonance imaging
Predict
Brain
Classify

Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

Pathak, J., Murphy, S. P., Willaert, B. N., Maradit Kremers, H. D., Chute, C. G., Yawn, B. P. & Rocca, W. A., 2011, CEUR Workshop Proceedings. Vol. 833. p. 266-268 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Epidemiology
Terminology
Health
Medicine
Availability

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data

Shen, F., Li, D., Liu, H. D., Lee, Y., Pathak, J., Chute, C. G. & Tao, C., 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. IEEE Computer Society, p. 531-534 4 p. 6864419

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Semantic Web
Semantics
Health
Technology

Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards

Jiang, G. D., Evans, J., Endle, C. M., Solbrig, H. R. & Chute, C. G., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1114.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Metadata
Visualization
Semantics
Web services
2 Citations (Scopus)

Using semantic web technology to support ICD-11 textual definitions authoring

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2012, ACM International Conference Proceeding Series. p. 38-44 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
5 Citations (Scopus)

Using SNOMED CT®as a reference terminology to cross map two highly pre-coordinated classification systems

Brown, S. H., Husser, C. S., Wahner-Roedler, D., Bailey, S., Nugent, L., Porter, K., Bauer, B. A. & Elkin, P. L., 2007, Studies in Health Technology and Informatics. Vol. 129. p. 636-639 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Systematized Nomenclature of Medicine
International Classification of Diseases
Terminology
Crosswalks
United States Department of Veterans Affairs
1 Citation (Scopus)

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
2 Citations (Scopus)

Using Unstructured Data to Identify Readmitted Patients

Rastegar-Mojarad, M., Lovely, J. K., Pankratz, J., Sohn, S., Ihrke, D. M., Merchea, A., Larson, D. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8031124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient Readmission
Electronic Health Records
Ambulatory Surgical Procedures
Datasets
1 Citation (Scopus)

Validation and discovery of genotype-phenotype associations in chronic diseases using linked data

Pathak, J., Kiefer, R., Freimuth, R. & Chute, C., 2012, Studies in Health Technology and Informatics. Vol. 180. p. 549-553 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genetic Association Studies
Semantic Web
Semantics
Single Nucleotide Polymorphism
Chronic Disease
1 Citation (Scopus)

Validation of a finite element model of passive force and pressure in skeletal muscle

Morrow, D. A., Haut Donahue, T. L., Odegard, G. M. & Kaufman, K. R., 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART A ed. p. 339-340 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Muscle
Skeletal Muscle
Pressure
3 Citations (Scopus)

Validation of computerized sniffer for monitoring perioperative normothermia

Giri, J., Li, M., Pickering, B. W., Subramanian, A., Kor, D. J. & Herasevich, V. D., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 943 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgery
Temperature
Monitoring
Hypothermia
Operating rooms
1 Citation (Scopus)

Validation of geometric measurements of the left atrium and pulmonary veins for analysis of reverse structural remodeling following ablation therapy

Rettmann, M. E., Holmes III, D. R., Gunawan, M. S., Ge, X., Karwoski, R. A., Breen, J. F., Packer, D. L. & Robb, R. A., 2012, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8317. 831724

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computerized tomography
Pulmonary Veins
Ablation
Heart Atria
veins
11 Citations (Scopus)

Validation of semi-automatic segmentation of the left atrium

Rettmann, M. E., Holmes III, D. R., Camp, J. J., Packer, D. L. & Robb, R. A., 2008, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6916. 691625

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catheters
Blood
Visualization
Ablation
Tomography

Validation of static and dynamic activity detection using a tri-axial accelerometer and video

Lugade, V., Fortune, E., Morrow, M. M. M. & Kaufman, K. R., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1067-1068 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accelerometers
16 Citations (Scopus)

Variance controlled shear stiffness images for MRE data

Mclaughlin, J., Renzi, D., Yoon, J. R., Ehman, R. L. & Manduca, A., 2006, 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. Vol. 2006. p. 960-963 4 p. 162579

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Helmholtz equation
Shear waves
Magnetic resonance
Stiffness
Derivatives
1 Citation (Scopus)

Ventricular maps in 804 subjects correlate with cognitive decline, CSF pathology, and imminent Alzheimer's disease

Chou, Y. Y., Leporé, N., Saharan, P., Madsen, S. K., Hua, X., Jack, C. R. J., Shaw, L. M., Trojanowski, J. Q., Weiner, M. W., Toga, A. W. & Thompson, P. M., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 241-244 4 p. 5490368

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cerebrospinal fluid
Biomarkers
Pathology
Cerebrospinal Fluid
Alzheimer Disease

Vibro-acoustography: The most promising approaches and inferred needs for transducers and arrays

Greenleaf, J. F., Fatemi, M., Silva, G. & Urban, M. W., 2006, Proceedings - IEEE Ultrasonics Symposium. Vol. 1. p. 2322-2324 3 p. 4152419

Research output: Chapter in Book/Report/Conference proceedingConference contribution

transducers
apertures
acoustic emission
lobes
harmonic motion

Vibro-acoustography and B-mode integration for 3D imaging

Kamimura, H. A. S., Fagundes, M. A., Fatemi, M. & Carneiro, A. A. O., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 421-424 4 p. 6090055

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elasticity Imaging Techniques
Imaging techniques
Bone
Bone and Bones
Topology

Vibro-acoustography beamforming and imaging with a 1.75D array transducer

Urban, M. W., Chalek, C., Thomenius, K. E., Fatemi, M. & Alizad, A., 2011, IEEE International Ultrasonics Symposium, IUS. p. 672-675 4 p. 6293280

Research output: Chapter in Book/Report/Conference proceedingConference contribution

beamforming
point spread functions
transducers
urethanes
hydrophones
6 Citations (Scopus)

Vibro-acoustography for modal analysis of arterial vessels

Zhang, X., Fatemi, M. & Greenleaf, J. F., 2002, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2002-January. p. 513-516 4 p. 1029307

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elasticity Imaging Techniques
Water tanks
Modal analysis
Silicones
Shear deformation
2 Citations (Scopus)

Vibro-acoustography imaging applications for the prostate

Fatemi, M. & Mitri, F. G., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. p. 4415-4419 5 p. 5333695

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elasticity Imaging Techniques
Cryosurgery
Brachytherapy
Feasibility Studies
Prostate
3 Citations (Scopus)

Vibro-acoustography with 1.75D ultrasound array transducer for detection and localization of permanent prostate brachytherapy seeds: Ex vivo study

Mehrmohammadi, M., Alizad, A., Kinnick, R. R., Davis, B. J. & Fatemi, M., 2013, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8675. 86750W

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elasticity Imaging Techniques
Brachytherapy
Transducers
Seed
seeds
1 Citation (Scopus)

Vibrometry: A novel noninvasive application of ultrasonographic physics to estimate wall stress in native aneurysms

Agarwal, G., Mozes, G., Kinnick, R. R., Gloviczki, P., Bruhnke, R. E., Carmo, M., Hoskin, T. L., Bennett, K. E. & Greenleaf, J. F., Nov 2006, Annals of the New York Academy of Sciences. Vol. 1085. p. 197-207 11 p. (Annals of the New York Academy of Sciences; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Physics
Aneurysm
Phase shift
Pressure
Rubber

Virtual angioscopic visualization and analysis of coronary aneurysms using intravascular ultrasound images

Ayeni, T. A. A., Holmes III, D. R. & Robb, R. A., 2001, Proceedings of SPIE - The International Society for Optical Engineering. Chen, C. & Clough, A. V. (eds.). Vol. 4321. p. 44-52 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
Ultrasonics
arteries
lumens
Cardiovascular system
3 Citations (Scopus)

Virtual Cardioscopy: Interactive endocardial visualization to guide RF cardiac ablation

Holmes III, D. R., Rettmann, M. E., Cameron, B. M., Camp, J. J. & Robb, R. A., 2006, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6143 I. 614316

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ablation
Visualization
Catheters
Animals
Navigation
18 Citations (Scopus)

Virtual endoscopy: Evaluation using the visible human datasets and comparison with real endoscopy in patients

Robb, R. A., 1997, Studies in Health Technology and Informatics. Vol. 39. p. 195-206 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Diagnosis
User-Computer Interface
Endoscopy
Reproducibility of Results
Computer Simulation
7 Citations (Scopus)

Virtual endoscopy vs real endoscopy: a comparative evaluation

Blezek, D. J., Robb, R. A. & Prather, C. M., 1997, Proceedings of SPIE - The International Society for Optical Engineering. Bellingham, WA, United States: Society of Photo-Optical Instrumentation Engineers, Vol. 3031. p. 542-552 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Endoscopy
physicians
evaluation
Visualization
acceptability

Virtual estimates of fastening strength for pedicle screw implantation procedures

Linte, C. A., Camp, J. J., Augustine, K. E., Huddleston, P. M., Robb, R. A. & Holmes III, D. R., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9036. 903617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

screws
implantation
Bone
Spine
bones
15 Citations (Scopus)

Virtual pelvic anatomy and surgery simulator: An innovative tool for teaching pelvic surgical anatomy

Holubar, S. D., Hassinger, J. P., Dozois, E., Camp, J. C., Farley, D. R., Fidler, J. L., Pawlina, W. & Robb, R. A., 2009, Studies in Health Technology and Informatics. Vol. 142. p. 122-124 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgery
Anatomy
Teaching
Simulators
Anatomic Models
4 Citations (Scopus)

Virtual reality simulation of regional anesthesia for training of residents

Blezek, D. J., Martin, D. P. & Robb, R. A., 2000, Proceedings of the Hawaii International Conference on System Sciences. Los Alamitos, CA, United States: IEEE, p. 122 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Anesthesiology
Virtual reality
Visualization
Feedback
Computerized tomography
1 Citation (Scopus)

Viscoelastic characterization of transverse isotropic tissue mimicking phantoms and muscle

Aristizabal, S., Amador, C., Qiang, B., Nenadic, I. Z., Greenleaf, J. F. & Urban, M. W., Oct 20 2014, IEEE International Ultrasonics Symposium, IUS. IEEE Computer Society, p. 228-231 4 p. 6932259

Research output: Chapter in Book/Report/Conference proceedingConference contribution

muscles
gelatins
S waves
fibers
transducers
9 Citations (Scopus)

Viscoelasticity of lung tissue with surface wave method

Zhang, X., Kinnick, R. R. & Greenleaf, J. F., 2008, Proceedings - IEEE Ultrasonics Symposium. p. 21-23 3 p. 4803548

Research output: Chapter in Book/Report/Conference proceedingConference contribution

viscoelasticity
lungs
surface waves
swine
elastic properties
5 Citations (Scopus)

Viscoelastic measurements on perfused and non-perfused swine renal cortex in vivo

Amador, C., Urban, M. W., Kinnick, R., Chen, S. D. & Greenleaf, J. F., 2010, Proceedings - IEEE Ultrasonics Symposium. p. 1530-1533 4 p. 5935672

Research output: Chapter in Book/Report/Conference proceedingConference contribution

swine
cortexes
elastic properties
kidneys
viscosity

Viscoelastic properties of breast masses: A frequency dispersion analysis using acoustic radiation force

Kumar, V., Bayat, M., Denis, M., Gregory, A., Webb, J., Whaley, D., Fatemi, M. & Alizad, A., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092758

Research output: Chapter in Book/Report/Conference proceedingConference contribution

sound waves
breast
elastic properties
S waves
viscosity
1 Citation (Scopus)

Viscoelastic tissue characteristics measured by ultrasound

Greenleaf, J. F. & Alizad, A., 2017, Optical Elastography and Tissue Biomechanics IV. SPIE, Vol. 10067. 1006705

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasonics
Tissue
Elasticity
Viscosity
elastic properties
4 Citations (Scopus)

Viscoelastic tissue mimicking phantom validation study with shear wave elasticity imaging and viscoelastic spectroscopy

Amador, C., Kinnick, R. R., Urban, M. W., Fatemi, M. & Greenleaf, J. F., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329486

Research output: Chapter in Book/Report/Conference proceedingConference contribution

S waves
elastic properties
shear
spectroscopy
viscosity

Visibility guided phase contrast denoising

Nelson, B., Koenig, T., Shanblatt, E., Leng, S. & McCollough, C. H., Jan 1 2019, Medical Imaging 2019: Physics of Medical Imaging. Bosmans, H., Chen, G-H. & Schmidt, T. G. (eds.). SPIE, 109484V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10948).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interferometry
phase contrast
visibility
Visibility
low visibility
2 Citations (Scopus)

Visual FHIR: An Interactive Browser to Navigate HL7 FHIR Specification

Hong, N., Wang, K., Yao, L. & Jiang, G. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 26-30 5 p. 8031128

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Delivery of Health Care
Learning Curve
Electronic Health Records
Semantics
6 Citations (Scopus)

Visualization and analysis of biomedical images

Robb, R. A., 1991, Proceedings of the Annual Conference on Engineering in Medicine and Biology. pt 3 ed. Piscataway, NJ, United States: Publ by IEEE, Vol. 13. p. 1048-1049 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
Display devices
UNIX
Fourier analysis
Image enhancement
12 Citations (Scopus)

Visualization of tissue elasticity by magnetic resonance elastography

Manduca, A., Muthupillai, R., Rossman, J., Greenleaf, J. F. & Ehman, R. L., 1996, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 1131. p. 63-68 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1131).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance
Magnetic resonance
Elasticity
Tumor
Visualization
8 Citations (Scopus)

Volume rendering: application in static field conformal radiosurgery

Bourland, J. D., Camp, J. J. & Robb, R. A., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Bellingham, WA, United States: Publ by Int Soc for Optical Engineering, Vol. 1808. p. 584-587 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Volume rendering
Linear accelerators
Geometry
lesions
Visualization

Volumetric CT measurement of the ischial tuberosities for designing analytical models of decubitus ulcers

Holmes III, D. R. & Robb, R. A., 2006, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6141. 614120

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analytical models
Tissue
Skin
Computerized tomography
Oils and fats