Rochester, MN

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Toward semantic web based knowledge representation and extraction from electronic health records

Tao, C., Pathak, J., Welch, S. R., Bouamrane, M. M., Huff, S. M. & Chute, C. G., Dec 15 2011, CIKM 2011 Glasgow: MIXHS'11 - Proceedings of the 1st International Workshop on Managing Interoperability and Complexity in Health Systems. p. 75-78 4 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Towards Estimation of Three-Dimensional Knee Rotations

McPherson, A. L., Felton, C. L., Hale, R., Gilbert, B. K., Schilaty, N. D., Hewett, T. E., Holmes, D. R. & Haider, C. R., Nov 2019, Conference Record - 53rd Asilomar Conference on Circuits, Systems and Computers, ACSSC 2019. Matthews, M. B. (ed.). IEEE Computer Society, p. 1359-1363 5 p. 9048749. (Conference Record - Asilomar Conference on Signals, Systems and Computers; vol. 2019-November).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards event sequence representation, reasoning and visualization for EHR data

Tao, C., Wongsuphasawat, K., Clark, K., Plaisant, C., Shneiderman, B. & Chute, C. G., Mar 8 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 801-805 5 p. (IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Towards improved detection of attackers in computer networks: New edges, fast updating, and host agents

Neil, J., Uphoff, B., Hash, C. & Storlie, C., Jan 1 2013, Proceedings - 2013 6th International Symposium on Resilient Control Systems, ISRCS 2013. IEEE Computer Society, p. 218-224 7 p. 6623779. (Proceedings - 2013 6th International Symposium on Resilient Control Systems, ISRCS 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

TOWARDS IMPROVED RECONSTRUCTION OF THE HEART FROM SMALL NUMBERS OF PROJECTIONS.

Heffernan, P. B. & Robb, R. A., Dec 1 1983, Computers in Cardiology. IEEE, p. 149-152 4 p. (Computers in Cardiology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Towards in-vivo ATP sensing

Adams, S., Kouzani, A. Z., Bennet, K. & Tye, S. J., Feb 8 2017, Proceedings of the 2016 IEEE Region 10 Conference, TENCON 2016. Institute of Electrical and Electronics Engineers Inc., p. 2457-2460 4 p. 7848474

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Towards quantification of interstitial pneumonia patterns in lung multidetector CT

Korfiatis, P., Karahaliou, A., Kazantzi, A., Kalogeropoulou, C. & Costaridou, L., Dec 1 2008, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 4696813. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Towards real-time QRS feature extraction for wearable monitors

Smital, L., Haider, C. R., Leinveber, P., Jurak, P., Gilbert, B. K. & Holmes III, D. R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 3519-3522 4 p. 7591487

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Toward standardized mapping for left atrial analysis and cardiac ablation guidance

Rettmann, M. E., Holmes, D. R., Linte, C. A., Packer, D. L. & Robb, R. A., Jan 1 2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, 90361K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9036).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Translational bioinformatics 101

Tenenbaum, J. D., Madhavan, S., Freimuth, R., Denny, J. C. & Frey, L., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 552-556 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transplantation of isolated xenogeneic tissue

Stegall, M. D. & Hardy, M. A., Jan 1 1989, Xenograft 25: proceedings of the International Congress, Xenograft 25. ICS880. Hardy, M. A. (ed.). Elsevier Science Publishers B.V., p. 285-296 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Trans-urethral ultrasound: A new tool for diagnostic and therapeutic imaging in prostate cancer

Holmes III, D. R., Davis, B. J. & Robb, R. A., 2001, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 2208. p. 1243-1244 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2208).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Trans-urethral ultrasound (TUUS) imaging for visualization and analysis of the prostate and associated tissues

Holmes, D. R. & Robb, R., Jan 1 2000, Medicine Meets Virtual Reality 2000 - Envisioning Healing: Interactive Technology and the Patient-Practitioner Dialogue. IOS Press, p. 126-132 7 p. (Studies in Health Technology and Informatics; vol. 70).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Trauma care decision support under fire

Nemeth, C., Pickering, B., Amos-Binks, A., Harrison, A., Pinevich, Y., Lowe, R., Rule, G., Laufersweiler, D. & Herasevich, V., Oct 2019, 2019 IEEE International Conference on Systems, Man and Cybernetics, SMC 2019. Institute of Electrical and Electronics Engineers Inc., p. 3705-3709 5 p. 8914242. (Conference Proceedings - IEEE International Conference on Systems, Man and Cybernetics; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

TRUS-fluoroscopy fusion for intraoperative prostate brachytherapy dosimetry

Su, Y., Davis, B. J., Herman, M. G. & Robb, R. A., Jan 1 2006, Medicine Meets Virtual Reality 14 - Accelerating Change in Healthcare: Next Medical Toolkit, MMVR 2006. IOS Press, p. 532-537 6 p. (Studies in Health Technology and Informatics; vol. 119).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Two-dimensional shear elasticity imaging using external mechanical vibration

Zhao, H., Song, P., Manduca, A., Kinnick, R. R., Urban, M. W., Greenleaf, J. F., Chen, S. & Catheline, S., Dec 1 2013, 2013 IEEE International Ultrasonics Symposium, IUS 2013. p. 1256-1259 4 p. 6725156. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Ultra-high resolution photon-counting detector CT reconstruction using spectral prior image constrained compressed-sensing (UHR-SPICCS)

Rajendran, K., Tao, S., Abdurakhimova, D., Leng, S. & McCollough, C. H., Jan 1 2018, Medical Imaging 2018: Physics of Medical Imaging. SPIE, Vol. 10573. 1057318

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Ultra-high spatial resolution multi-energy CT using photon counting detector technology

Leng, S., Gutjahr, R., Ferrero, A., Kappler, S., Henning, A., Halaweish, A., Zhou, W., Montoya, J. & McCollough, C. H., 2017, Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132. 101320Y

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations

Ultrasound propagation model for attenuation reduction and cardiac contrast perfusion visualization

Belohlavek, M., Asanuma, T., Kierulf, T., Fatemi, M. & Greenleaf, J. F., Jan 1 2002, 2002 IEEE International Symposium on Biomedical Imaging, ISBI 2002 - Proceedings. IEEE Computer Society, p. 445-448 4 p. 1029290. (Proceedings - International Symposium on Biomedical Imaging; vol. 2002-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Ultrasound radiation force noninvasive bone assessment

Wan, L., Cheong, M., Denis, M., Fatemi, M. & Alizad, A., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329616

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Ultrasound surface wave elastography of the living human eye

Zhang, X., McLaren, J., Kazemi, A., Lin, S. C., Pruet, C. M. & Sit, A. J., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728510

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images

Simon, G. J., Li, P. W., Jack, C. R. & Vemuri, P., Sep 16 2011, Proceedings of the 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD'11. p. 369-376 8 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Understanding scanner upgrade effects on brain integrity & connectivity measures

Zhan, L., Jahanshad, N., Jin, Y., Nir, T. M., Leonardo, C. D., Bernstein, M. A., Borowski, B., Jack, C. R. J. & Thompson, P. M., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 234-237 4 p. 6867852

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Universal nano-adhesive of PDMS oligomers

Ding, Y., Garland, S., Howland, M., Revzin, A. & Pan, T., May 7 2012, 2012 IEEE 25th International Conference on Micro Electro Mechanical Systems, MEMS 2012. p. 365-368 4 p. 6170210. (Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS)).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Unraveling complex local genomic rearrangements from long-read data

Stephens, Z. D., Iyer, R. K., Wang, C. & Kocher, J-P., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 181-187 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Unsupervised single-cell analysis in triple-negative breast cancer: A case study

Athreya, A. P., Gaglio, A. J., Kalbarczyk, Z. T., Iyer, R. K., Cairns, J., Kalari, K. R., Weinshilboum, R. M. & Wang, L. M., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 556-563 8 p. 7822581

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Updating a preoperative surface model with information from real-time tracked 2D ultrasound using a Poisson surface reconstruction algorithm

Sun, D., Rettmann, M. E., Holmes, D. R., Linte, C. A., Packer, D. & Robb, R. A., Jan 1 2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, 90361T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9036).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Use of a poroelastic model to predict intramuscular pressure

Morrow, D. A., Odegard, G. M. & Kaufman, K. R., Nov 15 2013, Poromechanics V - Proceedings of the 5th Biot Conference on Poromechanics. p. 2174-2183 10 p. (Poromechanics V - Proceedings of the 5th Biot Conference on Poromechanics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

USE OF REFERENCE DATA IN THE INTERPRETATION OF PARATHYROID HORMONE MEASUREMENTS.

Klee, G., Cox, C., Purnell, D. & Kao, P., 1984, Proceedings - Annual Symposium on Computer Applications in Medical Care. Cohen, G. S. (ed.). New York, NY, USA: IEEE, p. 398-401 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Use of ultrasonic CT for imaging acoustic nonlinearity parameter

Sehgal, C. M., Kinter, T. & Greenleaf, J. F., Dec 1 1990, Biomedical Engineering Perspectives: Health Care Technologies for the 1990's and Beyond. pt 1 ed. Publ by IEEE, p. 254-255 2 p. (Proceedings of the Annual Conference on Engineering in Medicine and Biology; no. pt 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using ChromaFlo intra-vascular ultrasound (IVUS) to analyze adventitial vasa vasorum distribution: Considerations and recommendations

Redwood, A., Holmes, D. R. & Robb, R., Jun 30 2006, Medical Imaging 2006: Physiology, Function, and Structure from Medical Images. 614309. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6143 I).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Using distributional analysis to semantically classify UMLS concepts

Fan, J. W., Xu, H. & Friedman, C., Jan 1 2007, MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics: Building Sustainable Health Systems. IOS Press, p. 519-523 5 p. (Studies in Health Technology and Informatics; vol. 129).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics

Breitenstein, M. K., Simon, G., Ryu, E., Armasu, S. M., Weinshilboum, R. M., Wang, L. & Pathak, J., Jan 1 2015, Digital Healthcare Empowering Europeans - Proceedings of MIE 2015. Cornet, R., Stoicu-Tivadar, L., Cornet, R., Parra Calderon, C. L., Andersen, S. K., Horbst, A. & Hercigonja-Szekeres, M. (eds.). IOS Press, p. 914-918 5 p. (Studies in Health Technology and Informatics; vol. 210).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using EHRs and Machine Learning for Heart Failure Survival Analysis

Panahiazar, M., Taslimitehrani, V., Pereira, N. L. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 40-44 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

33 Scopus citations

Using EHRs for Heart Failure Therapy Recommendation Using Multidimensional Patient Similarity Analytics

Panahiazar, M., Taslimitehrani, V., Pereira, N. L. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 210. p. 369-373 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Using functional MRI alone for localization in focal epilepsy

Zhang, C. H., Lu, Y., Brinkmann, B., Welker, K., Worrell, G. A. & He, B., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 730-733 4 p. 6943694

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Using human phenotype ontology for phenotypic analysis of clinical notes

Shen, F., Wang, L. & Liu, H. D., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, Vol. 245. 1 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Using linked data for mining drug-drug interactions in electronic health records

Pathak, J., Kiefer, R. C. & Chute, C. G., Jan 1 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 682-686 5 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

Using magnetic resonance microscopy to assess the osteogenesis in porous hydrogels

Mishra, P., Dadsetan, M., Rajagopalan, S., Hefferan, T. E., Yaszemski, M. J. & Macura, S. I., Dec 1 2007, Magnetic Resonance in Material Science. p. 33-38 6 p. (Materials Research Society Symposium Proceedings; vol. 984).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using multiple diffusion MRI measures to predict alzheimer’s disease with a TV-L1 prior

The Alzheimer’S Disease Neuroimaging Initiative (ADNI), 2017, Computational Diffusion MRI - MICCAI Workshop. Springer Heidelberg, Vol. Part F2. p. 157-166 10 p. (Mathematics and Visualization; vol. Part F2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data

Shen, F., Li, D., Liu, H., Lee, Y., Pathak, J., Chute, C. G. & Tao, C., Jan 1 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. IEEE Computer Society, p. 531-534 4 p. 6864419. (2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using semantic web technology to support ICD-11 textual definitions authoring

Jiang, G., Solbrig, H. R. & Chute, C. G., Apr 24 2012, 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, SWAT4LS 2011. p. 38-44 7 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Using SNOMED CT®as a reference terminology to cross map two highly pre-coordinated classification systems

Brown, S. H., Husser, C. S., Wahner-Roedler, D., Bailey, S., Nugent, L., Porter, K., Bauer, B. A. & Elkin, P. L., Jan 1 2007, MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics: Building Sustainable Health Systems. IOS Press, p. 636-639 4 p. (Studies in Health Technology and Informatics; vol. 129).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using Unstructured Data to Identify Readmitted Patients

Rastegar-Mojarad, M., Lovely, J. K., Pankratz, J., Sohn, S., Ihrke, D. M., Merchea, A., Larson, D. & Liu, H. D., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8031124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Validation and discovery of genotype-phenotype associations in chronic diseases using linked data

Pathak, J., Kiefer, R., Freimuth, R. & Chute, C., Jan 1 2012, Quality of Life Through Quality of Information - Proceedings of MIE 2012. IOS Press, p. 549-553 5 p. (Studies in Health Technology and Informatics; vol. 180).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Validation of a finite element model of passive force and pressure in skeletal muscle

Morrow, D. A., Haut Donahue, T. L., Odegard, G. M. & Kaufman, K. R., Dec 1 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART A ed. p. 339-340 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Validation of computerized sniffer for monitoring perioperative normothermia

Giri, J., Li, M., Pickering, B., Subramanian, A., Kor, D. J. & Herasevich, V., Jan 1 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Validation of geometric measurements of the left atrium and pulmonary veins for analysis of reverse structural remodeling following ablation therapy

Rettmann, M. E., Holmes, D. R., Gunawan, M. S., Ge, X., Karwoski, R. A., Breen, J. F., Packer, D. L. & Robb, R. A., May 14 2012, Medical Imaging 2012: Biomedical Applications in Molecular, Structural, and Functional Imaging. 831724. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8317).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Validation of semi-automatic segmentation of the left atrium

Rettmann, M. E., Holmes, D. R., Camp, J. J., Packer, D. L. & Robb, R. A., Jun 2 2008, Medical Imaging 2008 - Physiology, Function, and Structure from Medical Images. 691625. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6916).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations