Rochester, MN

Research Output

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Conference contribution
2008

A feature selection algorithm capable of handling extremely large data dimensionality

Sun, Y., Todorovic, S. & Goodison, S., 2008, Society for Industrial and Applied Mathematics - 8th SIAM International Conference on Data Mining 2008, Proceedings in Applied Mathematics 130. Society for Industrial and Applied Mathematics Publications, p. 530-540 11 p. (Society for Industrial and Applied Mathematics - 8th SIAM International Conference on Data Mining 2008, Proceedings in Applied Mathematics 130; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
18 Scopus citations

A fixed point method for homotopic ℓ0-minimization with application to MR image recovery

Trzasko, J. D. & Manduca, A., May 14 2008, Medical Imaging 2008 - Physics of Medical Imaging. 69130F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6913).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A fuzzy c-means algorithm using a correlation metrics and gene ontology

Zhang, M., Therneau, T., McKenzie, M. A., Li, P. & Yang, P., Jan 1 2008, 2008 19th International Conference on Pattern Recognition, ICPR 2008. Institute of Electrical and Electronics Engineers Inc., 4761672. (Proceedings - International Conference on Pattern Recognition).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Analysis of microarray titration experiments

Bebu, I., Seillier-Moiseiwitsch, F. & Liu, H., Dec 1 2008, Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008. p. 942-946 5 p. (Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A novel imaging beta probe for radioguided surgery

Thacker, S. C., Stack, B. C., Lowe, V., Gaysinskiy, V., Cool, S., Nagarkar, V. V. & Entine, G., Dec 1 2008, 2008 IEEE Nuclear Science Symposium Conference Record, NSS/MIC 2008. p. 3875-3878 4 p. 4774128. (IEEE Nuclear Science Symposium Conference Record).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

A novel micro optical probe for early diagnosis of upper gastrointestinal (GI) cancers

Garcia-Uribe, A., Balareddy, K. C., Zou, J., Wang, K. K. & Wang, L. V., Dec 1 2008, 2008 IEEE Sensors, SENSORS 2008. p. 910-913 4 p. 4716589. (Proceedings of IEEE Sensors).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antibody microarrays for immunoisolation of T-cells and immunodetection of secreted cytokines

Zhu, H., Stybayeva, G., Ramanculov, E., Dandekar, S., George, M. & Revzin, A., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A preliminary investigation of ROI-image reconstruction with the rebinned BPF algorithm

Bian, J., Xia, D., Yu, L., Sidky, E. Y. & Pan, X., May 14 2008, Medical Imaging 2008 - Physics of Medical Imaging. 69132I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6913).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic real-time capture and segmentation of endoscopy video

Stanek, S. R., Tavanapong, W., Wong, J. S., Oh, J. H. & De Groen, P. C., May 7 2008, Medical Imaging 2008: PACS and Imaging Informatics. 69190X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6919).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Automatic skeletonization for 3D hepatic portal vein in CT angiography

Jingjing, L., Zhi, Z., Pengfei, S., Enmin, S., Daoyu, H. & Qingguo, X., Dec 1 2008, 2008 IEEE Nuclear Science Symposium Conference Record, NSS/MIC 2008. p. 5396-5399 4 p. 4774452. (IEEE Nuclear Science Symposium Conference Record).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Bariatric surgery and stone disease

Lieske, J. C. & Kumar, R., Oct 22 2008, Renal Stone Disease 2 - 2nd International Urolithiasis Research Symposium. p. 189-193 5 p. (AIP Conference Proceedings; vol. 1049).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biosurveillance evaluation of SNOMED CT's terminology (BEST Trial): Coverage of chief complaints

Elkin, P. L., Brown, S. H., Balas, A., Temesgen, Z., Wahner-Roedler, D., Froehling, D., Liebow, M., Trusko, B., Rosenbloom, S. T. & Poland, G., 2008, Studies in Health Technology and Informatics. IOS Press, p. 797-802 6 p. (Studies in Health Technology and Informatics; vol. 136).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Broadband resonant-plate permittivity measurement technique for printed wiring boards aided by electromagnetic simulations

McCoy, B. O., Buhrow, B. R., Gilbert, B. K. & Daniel, E. S., Dec 1 2008, International Engineering Consortium - DesignCon 2008. p. 1286-1310 25 p. (International Engineering Consortium - DesignCon 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

CAD of colon cancer on CT colonography cases without cathartic bowel preparation

Linguraru, M. G., Zhao, S., Van Uitert, R. L., Liu, J., Fletcher, J. G., Manduca, A. & Summers, R. M., Dec 1 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 2996-2999 4 p. 4649833. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Coherent x-ray scattering for discriminating bio-compatible materials in tissue scaffolds

Cui, C., Jorgensen, S. M., Eaker, D. R. & Ritman, E. L., Nov 21 2008, Developments in X-Ray Tomography VI. 70781S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7078).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Combining nomogram and microarray data for predicting prostate cancer recurrence

Sun, Y., Cai, Y. & Goodison, S., Dec 1 2008, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 4696692. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Comparison of classification methods on protein-protein interaction document classification

Xu, G., Niu, Z., Uetz, P., Gao, X. & Liu, H., Dec 1 2008, Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 83-90 8 p. 4686213. (Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Composing web services through automatic reformulation of service specifications

Pathak, J., Basu, S. & Honavar, V., Sep 19 2008, Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008. p. 361-369 9 p. 4578483. (Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Dendrimer-based nanodevices for sustained intravitreal drug delivery

Rajaguru, B., Kannan, R. M. & Iezzi, R., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Designing electroactive biointerface for spatiotemporal control of cell attachment and release

Shah, S., Zhu, H., Yan, J., Verkhoturov, S. & Revzin, A., Dec 1 2008, ECS Transactions - Electrochemical Nano/Biosensors. 22 ed. p. 17-25 9 p. (ECS Transactions; vol. 13, no. 22).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Developing patient-specific anatomic models for validation of cardiac ablation guidance procedures

Holmes, D., Rettmann, M., Cameron, B., Camp, J. & Robb, R., Jun 18 2008, Medical Imaging 2008 - Visualization, Image-Guided Procedures, and Modeling. 69181W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6918).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Developmental restructuring of the creatine kinase system integrates mitochondrial energetics with stem cell cardiogenesis

Chung, S., Dzeja, P. P., Faustino, R. S. & Terzic, A., Dec 2008, Mitochondria and Oxidative Stress in Neurodegenerative Disorders. Blackwell Publishing Inc., p. 254-263 10 p. (Annals of the New York Academy of Sciences; vol. 1147).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

30 Scopus citations

Document classification for mining host pathogen protein-protein interactions

Xu, G., Yin, L., Torii, M., Niu, Z., Wu, C., Hu, Z. & Liu, H., Dec 1 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 461-466 6 p. 4684940. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Dual energy CT - How to best blend both energies in one fused image?

Eusemann, C., Holmes, D. R., Schmidt, B., Flohr, T. G., Robb, R., McCollough, C., Hough, D. M., Huprich, J. E., Wittmer, M., Siddiki, H. & Fletcher, J. G., Jun 18 2008, Medical Imaging 2008 - Visualization, Image-Guided Procedures, and Modeling. 691803. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6918).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

23 Scopus citations

Edge cross-section features for detection of appendiceal orifice appearance in colonoscopy videos

Wang, Y., Tavanapong, W., Wong, J., Oh, J. H. & De Groen, P. C., Dec 1 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 3000-3003 4 p. 4649834. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Effect of dynamic flow on hydrogel-mediated phenotypic expression of human osteoblasts

Heine-Geldern, A., Dadsetan, M., Benedikt, M., Gaustad, D., Herrick, J., Shogren, K. L., Maran, A., Hefferan, T. E. & Yaszemski, M. J., Dec 1 2008, 8th World Biomaterials Congress 2008. 1 p. (8th World Biomaterials Congress 2008; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enzymatically synthesized pegylated polymers as nanomicellar drug delivery systems

Kumar, R., Pandey, M. K., Tyagi, R., Parmar, V. S., Watterson, A. C. & Kumar, J., Mar 28 2008, Polymers for Biomedical Applications. American Chemical Society, p. 204-224 21 p. (ACS Symposium Series; vol. 977).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Ergonomic usability testing of operating room devices

Hallbeck, M. S., Koneczny, S., Büchel, D. & Matern, U., Jan 1 2008, Medicine Meets Virtual Reality 16 - Parallel, Combinatorial, Convergent: NextMed by Design, MMVR 2008. IOS Press, p. 147-152 6 p. (Studies in Health Technology and Informatics; vol. 132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Evaluation of input control type and screen view orientation for a hand-held radiation detector

Crowe, J., Castillejos, P., Herring, S. & Hallbeck, M. S., Dec 1 2008, 52nd Human Factors and Ergonomics Society Annual Meeting, HFES 2008. p. 1672-1676 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exact and approximate cone-beam reconstruction algorithms for C-arm based cone-beam CT using a two-concentric-arc source trajectory

Zhuang, T., Zambelli, J., Nett, B., Leng, S. & Chen, G. H., May 14 2008, Medical Imaging 2008 - Physics of Medical Imaging. 691321. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6913).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Exercise-induced respiratory muscle work: Effects on blood flow, fatigue and performance

Dempsey, J. A., Miller, J. D., Romer, L., Amann, M. & Smith, C. A., Dec 1 2008, Integration in Respiratory Control: From Genes to Systems. p. 209-212 4 p. (Advances in Experimental Medicine and Biology; vol. 605).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Expression of selected aurora a kinase substrates in solely estrogen-induced ectopic uterine stem cell tumors in the syrian hamster kidney

Hontz, A. E., Li, S. A., Salisbury, J. L., Lingle, W. L. & Li, J. J., Dec 1 2008, Hormonal Carcinogenesis V. Li, J., Li, S., Mohla, S., Rochefort, H., Rochefort, H. & Maudelonde, T. (eds.). p. 411-418 8 p. (Advances in Experimental Medicine and Biology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Further observations in congenital myasthenic syndromes

Engel, A. G., Shen, X. M., Selcen, D. & Sine, S. M., Jun 2008, Myasthenia Gravis and Related Disorders 11th International Conference. Blackwell Publishing Inc., p. 104-113 10 p. (Annals of the New York Academy of Sciences; vol. 1132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

30 Scopus citations

Head modeling and cortical source localization in epilepsy

Acar, Z. A., Makeig, S. & Worrell, G., 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. IEEE Computer Society, p. 3763-3766 4 p. 4650027. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

High resolution X-ray imaging of dynamic solute transport in cyclically deformed porous tissue scaffolds

Den Buijs, J. O., Lee, K. W., Jorgensen, S. M., Wang, S., Yaszemski, M. J. & Ritman, E. L., Jun 2 2008, Medical Imaging 2008 - Physiology, Function, and Structure from Medical Images. 69161A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6916).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Human mast cells stimulate activated T cells: Implications for multiple sclerosis

Theoharides, T. C., Kempuraj, D., Kourelis, T. & Manola, A., Nov 2008, Neural Signaling Opportunities for Novel Diagnostic Approaches and Therapies. Blackwell Publishing Inc., p. 74-82 9 p. (Annals of the New York Academy of Sciences; vol. 1144).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

40 Scopus citations

Improving neutron detection: Usability analysis of control mechanisms and control orientations for use in hand-held devices

Herring, S., Castillejos, P. & Hallbeck, M. S., Dec 1 2008, 52nd Human Factors and Ergonomics Society Annual Meeting, HFES 2008. p. 1677-1681 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incorporation of hydroxyapatite into hydrogels enhances differentiation of osteoblasts

Heine-Geldern, A., Dadsetan, M., Yaszemski, A., Ozgo, K., Maran, A., Hefferan, T. E. & Yaszemski, M. J., Dec 1 2008, 8th World Biomaterials Congress 2008. 1 p. (8th World Biomaterials Congress 2008; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Inferring condition-specific miRNA-Gene modules from miRNA and mRNA profiling data

Xiong, J., Wang, C., Zhang, B., Wang, Y., Hoffman, E. P., Clarke, R. & Xuan, J., Dec 1 2008, International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008. p. 49-55 7 p. (International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Initial mechanical stability of cementless porous titanium patellar components

Eason, R. P., Ledford, N., Lerro, T., Cornwell, P., Rae, P., Willms, R. B., Meneghini, R. M. & Hanssen, A., Dec 1 2008, IMAC-XXVI: Conference and Exposition on Structural Dynamics - Technologies for Civil Structures. (Conference Proceedings of the Society for Experimental Mechanics Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Integrative network component analysis for regulatory network reconstruction

Wang, C., Xuan, J., Chen, L., Zhao, P., Wang, Y., Clarke, R. & Hoffman, E. P., Aug 27 2008, Bioinformatics Research and Applications - Fourth International Symposium, ISBRA 2008, Proceedings. p. 196-207 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4983 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intramyocardial capillary blood volume estimated by whole-body CT - Validation by micro-CT

Dong, Y., Beighley, P. E., Eaker, D. R., Zamir, M. & Ritman, E. L., Jun 2 2008, Medical Imaging 2008 - Physiology, Function, and Structure from Medical Images. 691624. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6916).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

iProLINK: A framework for linking text mining with ontology and systems biology

Hu, Z. Z., Cohen, K. B., Hirschman, L., Valencia, A., Liu, H., Giglio, M. G. & Wu, C. H., Dec 1 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 467-472 6 p. 4684941. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction

Hwang, T., Tian, Z., Kuang, R. & Kocher, J. P., Dec 1 2008, Proceedings - 8th IEEE International Conference on Data Mining, ICDM 2008. p. 293-302 10 p. 4781124. (Proceedings - IEEE International Conference on Data Mining, ICDM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

24 Scopus citations

LexSearch: An approach for leveraging semantic annotations to searching ontologies

Pathak, J., Buntrock, J. D. & Chute, C. G., Sep 30 2008, Semantic Scientific Knowledge Integration - Papers from the AAAI Spring Symposium, Technical Report. p. 68-73 6 p. (AAAI Spring Symposium - Technical Report; vol. SS-08-05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Loss of urinary macromolecules in mice causes interstitial and intratubular renal calcification dependent on the underlying conditions

Wu, X. R., Lieske, J. C., Evan, A. P., Sommer, A. J., Liaw, L. & Mo, L., Oct 22 2008, Renal Stone Disease 2 - 2nd International Urolithiasis Research Symposium. p. 113-119 7 p. (AIP Conference Proceedings; vol. 1049).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mapping hippocampal degeneration in 400 subjects with a novel automated segmentation approach

Morra, J. H., Tu, Z., Apostolova, L. G., Green, A. E., Avedissian, C., Madsen, S. K., Parikshak, N., Hua, X., Toga, A. W., Jack, C. R., Schuff, N., Weiner, M. W. & Thompson, P., Sep 10 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 336-339 4 p. 4541001. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Micropatterned co-culture of embryonic stem cells with adult hepatocytes for directing hepatic differentiation

Lee, J. Y., Tuleuova, N., Jones, C. N. & Revzin, A., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modular ontology techniques and their applications in the biomedical domain

Pathak, J., Johnson, T. M. & Chute, C. G., Sep 23 2008, 2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008. p. 351-356 6 p. 4583056. (2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Monte carlo simulation to determine conditions for optical molecular imaging of vascular disease

Madzivire, M., Riederer, C. & Greenleaf, J., Sep 10 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 169-172 4 p. 4540959. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution