Quantitative Health Sciences

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  • 2009

    3D reconstruction of colon segments from colonoscopy images

    Hong, D. H., Tavanapong, W., Wong, J., Oh, J. H. & De Groen, P. C., Nov 18 2009, Proceedings of the 2009 9th IEEE International Conference on Bioinformatics and BioEngineering, BIBE 2009. p. 53-60 8 p. 5211317. (Proceedings of the 2009 9th IEEE International Conference on Bioinformatics and BioEngineering, BIBE 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • A new validity measure for a correlation-based fuzzy C-means clustering algorithm

    Zhang, M., Zhang, W., Sicotte, H. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3865-3868 4 p. 5332582. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    14 Scopus citations
  • Development of dbOGAP: A bioinformatics resource of O-GlcNAcylated proteins and site prediction

    Hu, Z. Z., Torii, M., Wang, J., Liu, H. & Hart, G. W., Dec 1 2009, Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009. 1 p. 5332094. (Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Gender and arthroplasty type affect prevalence of moderate-severe pain post total hip arthroplasty

    Singh, J. A., Gabriel, S. E. & Lewallen, D., 2009, 13th International Conference on Biomedical Engineering - ICBME 2008. p. 1640-1643 4 p. (IFMBE Proceedings; vol. 23).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Integrating r models with web technologies

    Zhang, M., Olson, S., Francioni, J., Gegg-Harrison, T., Meng, N., Sun, Z. & Yang, P., Jul 21 2009, HEALTHINF 2009 - Proceedings of the 2nd International Conference on Health Informatics. p. 411-415 5 p. (HEALTHINF 2009 - Proceedings of the 2nd International Conference on Health Informatics).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Online feature selection algorithm with bayesian ℓ 1 regularization

    Cai, Y., Sun, Y., Li, J. & Goodison, S., 2009, 13th Pacific-Asia Conference on Knowledge Discovery and Data Mining, PAKDD 2009. p. 401-413 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5476 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Paper prototypes for the detection of stereotype violations in (medical) device operation - Are they good enough?

    Hallbeck, M. S., Koneczny, S. & Smith, J., Jan 1 2009, Medicine Meets Virtual Reality 17 - NextMed: Design for/the Well Being. IOS Press, p. 109-111 3 p. (Studies in Health Technology and Informatics; vol. 142).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Participatory ergonomics generates new product to assist rural workers in greenhouses

    Miguez, S. A., Vink, P. & Hallbeck, M. S., 2009, 53rd Human Factors and Ergonomics Society Annual Meeting 2009, HFES 2009. Human Factors an Ergonomics Society Inc., p. 1282-1285 4 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Porting a cancer treatment prediction to a mobile device

    Gegg-Harrison, T., Zhang, M., Meng, N., Sun, Z. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 6218-6221 4 p. 5334551. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Real-time phase boundary detection in colonoscopy videos

    Oh, J., Rajbal, M. A., Muthukudage, J. K., Tavanapong, W., Wong, J. & De Groen, P. C., Nov 30 2009, ISPA 2009 - Proceedings of the 6th International Symposium on Image and Signal Processing and Analysis. p. 724-729 6 p. 5297638. (ISPA 2009 - Proceedings of the 6th International Symposium on Image and Signal Processing and Analysis).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • Simulating visual impairment to detect hospital wayfinding difficulties

    Rousek, J. B., Koneczny, S. & Hallbeck, M. S., Jan 1 2009, 53rd Human Factors and Ergonomics Society Annual Meeting 2009, HFES 2009. Human Factors an Ergonomics Society Inc., p. 531-535 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Simulating visual impairment to detect hospital way-finding difficulties

    Koneczny, S., Rousek, J. B. & Hallbeck, M. S., Jan 1 2009, Medicine Meets Virtual Reality 17 - NextMed: Design for/the Well Being. IOS Press, p. 133-135 3 p. (Studies in Health Technology and Informatics; vol. 142).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • 2008

    Adopting graph traversal techniques for context-driven value sets extraction from biomedical knowledge sources

    Pathak, J., Jiang, G., Dwarkanath, S. O., Buntrock, J. D. & Chute, C. G., 2008, Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008. p. 460-467 8 p. 4597226. (Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • A feature selection algorithm capable of handling extremely large data dimensionality

    Sun, Y., Todorovic, S. & Goodison, S., 2008, Society for Industrial and Applied Mathematics - 8th SIAM International Conference on Data Mining 2008, Proceedings in Applied Mathematics 130. Society for Industrial and Applied Mathematics Publications, p. 530-540 11 p. (Society for Industrial and Applied Mathematics - 8th SIAM International Conference on Data Mining 2008, Proceedings in Applied Mathematics 130; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • A fuzzy c-means algorithm using a correlation metrics and gene ontology

    Zhang, M., Therneau, T., McKenzie, M. A., Li, P. & Yang, P., Jan 1 2008, 2008 19th International Conference on Pattern Recognition, ICPR 2008. Institute of Electrical and Electronics Engineers Inc., 4761672. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Automatic real-time capture and segmentation of endoscopy video

    Stanek, S. R., Tavanapong, W., Wong, J. S., Oh, J. H. & De Groen, P. C., May 7 2008, Medical Imaging 2008: PACS and Imaging Informatics. 69190X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6919).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Combining nomogram and microarray data for predicting prostate cancer recurrence

    Sun, Y., Cai, Y. & Goodison, S., 2008, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 4696692. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Composing web services through automatic reformulation of service specifications

    Pathak, J., Basu, S. & Honavar, V., Sep 19 2008, Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008. p. 361-369 9 p. 4578483. (Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Document classification for mining host pathogen protein-protein interactions

    Xu, G., Yin, L., Torii, M., Niu, Z., Wu, C., Hu, Z. & Liu, H., 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 461-466 6 p. 4684940. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Edge cross-section features for detection of appendiceal orifice appearance in colonoscopy videos

    Wang, Y., Tavanapong, W., Wong, J., Oh, J. H. & De Groen, P. C., 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 3000-3003 4 p. 4649834. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Ergonomic usability testing of operating room devices

    Hallbeck, M. S., Koneczny, S., Büchel, D. & Matern, U., Jan 1 2008, Medicine Meets Virtual Reality 16 - Parallel, Combinatorial, Convergent: NextMed by Design, MMVR 2008. IOS Press, p. 147-152 6 p. (Studies in Health Technology and Informatics; vol. 132).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Evaluation of input control type and screen view orientation for a hand-held radiation detector

    Crowe, J., Castillejos, P., Herring, S. & Hallbeck, M. S., Dec 1 2008, 52nd Human Factors and Ergonomics Society Annual Meeting, HFES 2008. p. 1672-1676 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Improving neutron detection: Usability analysis of control mechanisms and control orientations for use in hand-held devices

    Herring, S., Castillejos, P. & Hallbeck, M. S., Dec 1 2008, 52nd Human Factors and Ergonomics Society Annual Meeting, HFES 2008. p. 1677-1681 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Inferring condition-specific miRNA-Gene modules from miRNA and mRNA profiling data

    Xiong, J., Wang, C., Zhang, B., Wang, Y., Hoffman, E. P., Clarke, R. & Xuan, J., 2008, International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008. p. 49-55 7 p. (International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Integrative network component analysis for regulatory network reconstruction

    Wang, C., Xuan, J., Chen, L., Zhao, P., Wang, Y., Clarke, R. & Hoffman, E. P., 2008, Bioinformatics Research and Applications - Fourth International Symposium, ISBRA 2008, Proceedings. p. 196-207 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4983 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction

    Hwang, T., Tian, Z., Kuang, R. & Kocher, J. P., Dec 1 2008, Proceedings - 8th IEEE International Conference on Data Mining, ICDM 2008. p. 293-302 10 p. 4781124. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    32 Scopus citations
  • LexSearch: An approach for leveraging semantic annotations to searching ontologies

    Pathak, J., Buntrock, J. D. & Chute, C. G., 2008, Semantic Scientific Knowledge Integration - Papers from the AAAI Spring Symposium, Technical Report. p. 68-73 6 p. (AAAI Spring Symposium - Technical Report; vol. SS-08-05).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Modular ontology techniques and their applications in the biomedical domain

    Pathak, J., Johnson, T. M. & Chute, C. G., 2008, 2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008. p. 351-356 6 p. 4583056. (2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Reliability analysis of transcriptional regulatory networks

    Wang, C., Xuan, J., Chen, L., Hoffman, E. P. & Clarke, R., 2008, International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008. p. 42-48 7 p. (International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics 2008, BCBGC 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Stool detection in colonoscopy videos

    Hwang, S., Oh, J. H., Tavanapong, W., Wong, J. & De Groen, P. C., Dec 1 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 3004-3007 4 p. 4649835. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Symposium on patient safety

    Hallbeck, M. S. & Koneczny, S., Dec 1 2008, 52nd Human Factors and Ergonomics Society Annual Meeting, HFES 2008. p. 840-841 2 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2007

    Aequus communis sententia: Defining levels of interoperability

    Elkin, P. L., Froehling, D., Bauer, B. A., Wahner-Roedler, D., Rosenbloom, S. T., Bailey, K. R. & Brown, S. H., 2007, Studies in Health Technology and Informatics. Vol. 129. p. 725-729 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Aequus communis sententia: Defining levels of interoperability

    Elkin, P. L., Froehling, D., Bauer, B. A., Wahner-Roedler, D., Rosenbloom, S. T., Bailey, K. & Brown, S. H., 2007, MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics: Building Sustainable Health Systems. IOS Press, p. 725-729 5 p. (Studies in Health Technology and Informatics; vol. 129).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Scopus citations
  • A service-oriented architecture for electric power transmission system asset management

    Pathak, J., Li, Y., Honavar, V. & McCalley, J., 2007, Service-Oriented Computing ICSOC 2006 - 4th International Conference, Workshops Proceedings. Springer Verlag, p. 26-37 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4652 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    18 Scopus citations
  • Automatic polyp region segmentation for colonoscopy images using watershed algorithm and ellipse segmentation

    Hwang, S., Oh, J. H., Tavanapong, W., Wong, J. & De Groen, P. C., 2007, Medical Imaging 2007: Computer-Aided Diagnosis. PART 1 ed. 65141D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6514, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Biomarker identification by knowledge-driven multi-level ICA and motif analysis

    Chen, L., Wang, C., Shih, I. M., Wang, T. L., Zhang, Z., Wang, Y., Clarke, R., Hoffman, E. & Xuan, J., 2007, Proceedings - 6th International Conference on Machine Learning and Applications, ICMLA 2007. p. 560-566 7 p. 4457289. (Proceedings - 6th International Conference on Machine Learning and Applications, ICMLA 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Business-activity driven search: Addressing the information needs of services professionals

    Rajamani, N., Devarakonda, M., Yu, D., Zadrozny, W. & Pathak, J., 2007, Proceedings - 2007 IEEE International Conference on Services Computing, SCC 2007. p. 644-651 8 p. 4278715. (Proceedings - 2007 IEEE International Conference on Services Computing, SCC 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Comparison of four cursor control devices for development of a powered laparoscopic surgery tool - Users' opinions

    Herring, S. R., Trejo, A. E. & Hallbeck, M. S., Dec 1 2007, 51st Annual Meeting of the Human Factors and Ergonomics Society, HFES 2007. p. 996-1000 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Evaluation of a hand-held neutron detector for usability, design and comfort

    Castillejos, P. & Hallbeck, M. S., Dec 1 2007, 51st Annual Meeting of the Human Factors and Ergonomics Society, HFES 2007. p. 1001-1005 5 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Integrated decision algorithms for auto-steered electric transmission system asset management

    McCalley, J., Honavar, V., Ryan, S., Meeker, W., Qiao, D., Roberts, R., Li, Y., Pathak, J., Ye, M. & Hong, Y., 2007, Computational Science - ICCS 2007 - 7th International Conference, Proceedings, Part I. Springer Verlag, p. 1066-1073 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4487 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    3 Scopus citations
  • Mapping gene/protein names in free text to biomedical databases

    Liu, H., Torii, M., Hu, Z. Z. & Wu, C., Dec 1 2007, ICDM Workshops 2007 - Proceedings of the 17th IEEE International Conference on Data Mining Workshops. p. 101-106 6 p. 4476653. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • On context-specific substitutability of Web services

    Pathak, J., Basu, S. & Honavar, V., Dec 1 2007, Proceedings - 2007 IEEE International Conference on Web Services, ICWS 2007. p. 192-199 8 p. 4279599. (Proceedings - 2007 IEEE International Conference on Web Services, ICWS 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    43 Scopus citations
  • Polyp detection in colonoscopy video using elliptical shape feature

    Hwang, S., Oh, J., Tavanapong, W., Wong, J. & De Groen, P. C., Dec 1 2007, 2007 IEEE International Conference on Image Processing, ICIP 2007 Proceedings. p. II465-II468 4379193. (Proceedings - International Conference on Image Processing, ICIP; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    94 Scopus citations
  • Quadrant coverage histogram: A new method for measuring quality of colonoscopic procedures

    Liu, D., Cao, Y., Tavanapong, W., Wong, J., Oh, J. & De Groen, P. C., 2007, 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. p. 3470-3473 4 p. 4353078. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Semiparametric RMA background-correction for oligonucleotide arrays

    Bebu, I., Seillier-Moiseiwitsch, F. & Liu, H., Dec 1 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 1404-1408 5 p. 4375756. (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • The effect of extracellular potassium concentration on muscle fiber conduction velocity examined using model simulation

    Fortune, E. & Lowery, M. M., 2007, 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. p. 2726-2729 4 p. 4352892. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Using distributional analysis to semantically classify UMLS concepts

    Fan, J. W., Xu, H. & Friedman, C., Jan 1 2007, MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics: Building Sustainable Health Systems. IOS Press, p. 519-523 5 p. (Studies in Health Technology and Informatics; vol. 129).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • 2006

    A hand-held neutron detection sensor system

    Osberg, K., Schemm, N., Balkir, S., Brand, J. I., Hallbeck, S. & Dowbent, P., Dec 1 2006, ISCAS 2006: 2006 IEEE International Symposium on Circuits and Systems, Proceedings. p. 1179-1182 4 p. 1692801. (Proceedings - IEEE International Symposium on Circuits and Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    18 Scopus citations
  • Automatic classification of images with appendiceal orifice in colonoscopy videos

    Cao, Y., Liu, D., Tavanapong, W., Wong, J., Oh, J. H. & De Groen, P. C., 2006, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06. p. 2349-2352 4 p. 4029656. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Condition data aggregation with application to failure rate calculation of power transformers

    Pathak, J., Jiang, Y., Honavar, V. & McCalley, J., Oct 17 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, HICSS'06. p. 241a 1579787. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 10).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    34 Scopus citations