Mayo Clinic

Research Output

Filter
Conference contribution
2015

A sequential data analysis approach to electronic health record workflow

Kaufman, D. R., Furniss, S. K., Grando, M. A., Larson, D. & Burton, M. M., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 218. p. 120-125 6 p. (Studies in Health Technology and Informatics; vol. 218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution

Jiang, G. D., Solbrig, H. R., Kiefer, R., Rasmussen, L. V., Mo, H., Speltz, P., Thompson, W. K., Denny, J. C., Chute, C. G. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1098 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A systematic investigation of feasible acoustic windows and the impact of myocardial anisotropy for in vivo human cardiac shear wave elastography

Song, P., Bi, X., Mellema, D. C., Manduca, A., Urban, M. W., Greenleaf, J. F. & Chen, S. D., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329157

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A systematic prediction of adverse drug reactions using pre-clinical drug characteristics and spontaneous reports

Ngufor, C., Wojtusiak, J. & Pathak, J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 76-81 6 p. 7349677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Automatic polyp detection in colonoscopy videos using an ensemble of convolutional neural networks

Tajbakhsh, N., Gurudu, S. R. & Liang, J., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 79-83 5 p. 7163821

Research output: Chapter in Book/Report/Conference proceedingConference contribution

67 Scopus citations

Bioinformatics strategies for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing

Champion, M. D., Hlady, R. A., Yan, H. D., Evans, J., Nie, J., Lee, J. H., Bogenberger, J., Nandakumar, K., Davila, J., Moore, R., Nair, A., O'Brien, D., Zhu, Y. X., Kortum, K. M., Ordog, T., Zhang, Z., Joseph, R. W., Stewart, A. K., Kocher, J-P., Jonasch, E. & 3 others, Robertson, K. D., Tibes, R. & Ho, T. H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. SciTePress, p. 163-170 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Block cipher speed and energy efficiency records on the MSP430: System design trade-offs for 16-Bit embedded applications

Buhrow, B., Riemer, P., Shea, M., Gilbert, B. K. & Daniel, E., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8895. p. 104-123 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8895).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

BmQGen: Biomedical query generator for knowledge discovery

Shen, F., Liu, H. D., Sohn, S., Larson, D. & Lee, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1092-1097 6 p. 7359833

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Bridging vaccine ontology and NCIt vaccine domain for cancer vaccine data integration and analysis

He, Y. & Jiang, G. D., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1515.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Challenges in estimation of tissue elasticity using low-frequency shear waves

Fatemi, M., Gregory, A., Bayat, M., Denis, M. & Alizad, A., 2015, 22nd International Congress on Sound and Vibration, ICSV 2015. International Institute of Acoustics and Vibrations

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical decision making: A framework for predicting Rx response

Sathyanarayana, A., Pathak, J., McCoy, R., Romero-Brufau, S., Panaziahar, M. & Srivastava, J., Jan 26 2015, IEEE International Conference on Data Mining Workshops, ICDMW. January ed. IEEE Computer Society, Vol. 2015-January. p. 1185-1188 4 p. 7022730

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Clinical Decision Support to Implement CYP2D6 Drug-Gene Interaction

Caraballo, P., Parkulo, M., Blair, D., Elliott, M., Schultz, C., Sutton, J., Rao, P., Bruflat, J., Bleimeyer, R., Crooks, J., Gabrielson, D., Nicholson, W., Rohrer Vitek, C., Wix, K., Bielinski, S. J., Pathak, J. & Kullo, I. J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 946 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Comparison of breast density measurements made using ultrasound tomography and mammography

Sak, M., Duric, N., Littrup, P., Bey-Knight, L., Krycia, M., Sherman, M. E., Boyd, N. & Gierach, G. L., 2015, Medical Imaging 2015: Ultrasonic Imaging and Tomography. SPIE, Vol. 9419. 94190R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Computer-aided pulmonary embolism detection using a novel vessel-aligned multi-planar image representation and convolutional neural networks

Tajbakhsh, N., Gotway, M. & Liang, J., 2015, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference, Proceedings. Springer Verlag, Vol. 9350. p. 62-69 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9350).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

35 Scopus citations

Connectivity of epileptic brain regions in wake and sleep

Klimes, P., Duque, J. J., Jurak, P., Halamek, J. & Worrell, G. A., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 2191-2194 4 p. 7318825

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Construction of realistic liver phantoms from patient images using 3D printer and its application in CT image quality assessment

Leng, S., Yu, L., Vrieze, T., Kuhlmann, J., Chen, B. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9412. 94124E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Control of a 2-DOF powered ankle-foot mechanism

Ficanha, E. M., Rastgaar, M. & Kaufman, K. R., Jun 29 2015, Proceedings - IEEE International Conference on Robotics and Automation. June ed. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-June. p. 6439-6444 6 p. 7140103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Detection of ulcerative colitis severity in colonoscopy video frames

Dahal, A., Oh, J., Tavanapong, W., Wong, J. & De Groen, P. C., Jul 9 2015, 2015 13th International Workshop on Content-Based Multimedia Indexing, CBMI 2015. IEEE Computer Society, 7153617. (Proceedings - International Workshop on Content-Based Multimedia Indexing; vol. 2015-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Developing a modular architecture for creation of rule-based clinical diagnostic criteria

Hong, N., Jiang, G. D., Pathak, J. & Chute, C. G., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1428.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model

Jiang, G. D., Solbrig, H. R., Pathak, J. & Chute, C. G., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1097 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Development of an MR and CT compatible non-invasive temperature based optical fiber respiration sensor for use in radiotherapy

Smith, A., Kim, S., Serago, C., Hintenlang, K., Pooley, R. & Hintenlang, D., 2015, IFMBE Proceedings. Springer Verlag, Vol. 51. p. 603-606 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

DICOM index tracker enterprise: Advanced system for enterprise-wide quality assurance and patient safety monitoring

Zhang, M., Pavlicek, W., Panda, A., Langer, S. G., Morin, R., Fetterly, K. A., Paden, R., Hanson, J., Wu, L. W. & Wu, T., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9418. 94180L

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Dimensionality reduction via graph structure learning

Mao, Q., Wang, L., Goodison, S. & Sun, Y., Aug 10 2015, KDD 2015 - Proceedings of the 21st ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 765-774 10 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

24 Scopus citations

Effects of Plasma Transfusion on Perioperative Bleeding Complications: A Machine Learning Approach

Ngufor, C., Murphree, D., Upadhyaya, S., Madde, N., Kor, D. J. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 721-725 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Empowering personalized medicine with big data and semantic web technology: Promises, challenges, and use cases

Panahiazar, M., Taslimitehrani, V., Jadhav, A. & Pathak, J., Jan 7 2015, Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014. Chang, W., Huan, J., Cercone, N., Pyne, S., Honavar, V., Lin, J., Hu, X. T., Aggarwal, C., Mobasher, B., Pei, J. & Nambiar, R. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 790-795 6 p. 7004307. (Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

38 Scopus citations

Ensemble learning approaches to predicting complications of blood transfusion

Murphree, D., Ngufor, C., Upadhyaya, S., Madde, N., Clifford, L., Kor, D. J. & Pathak, J., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 7222-7225 4 p. 7320058

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Evaluating arterial and plaque elasticity with shear wave elastography in an ex vivo porcine model

Widman, E., Maksuti, E., Carrascal, C. A., Urban, M. W. & Larsson, M., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329503

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Examining the successful outcomes of multidisciplinary teamwork in a code situation using the shared mental model framework

Moore, N. K., Squire, K. M. & Blocker, R., Jan 1 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 513-517 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Feasibility of modeling HL7 FHIR profiles using RDF shape expressions language

Solbrig, H. R., Prud'hommeaux, E., Sharma, D. K., Chute, C. G. & Jiang, G. D., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1546. p. 208-209 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feasibility of visualizing higher regions of Shannon entropy in atrial fibrillation patients

Arunachalam, S. P., Mulpuru, S., Friedman, P. A. & Tolkacheva, E. G., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 4499-4502 4 p. 7319394

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Feature selection for nonlinear regression and its application to cancer research

Sun, Y., Yao, J. & Goodison, S., Jan 1 2015, SIAM International Conference on Data Mining 2015, SDM 2015. Ye, J. & Venkatasubramanian, S. (eds.). Society for Industrial and Applied Mathematics Publications, p. 73-81 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Feature selection improves the accuracy of classifying Alzheimer disease using diffusion tensor images

Demirhan, A., Nir, T. M., Zavaliangos-Petropulu, A., Jack, C. R. J., Weiner, M. W., Bernstein, M. A., Thompson, P. M. & Jahanshad, N., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 126-130 5 p. 7163832

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

How calcifications affect shear wave speed estimations? An experimental study

Gregory, A., Bo, Q., Bayat, M., Denis, M., Mehrmohammadi, M., Fatemi, M. & Alizad, A., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329268

Research output: Chapter in Book/Report/Conference proceedingConference contribution

IDECIDE: A Mobile Application for Insulin Dosing Using an Evidence Based Equation to Account for Patient Preferences

Lloyd, B., Groat, D., Cook, C. B., Kaufman, D. & Grando, A., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 93-97 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Identification of Patients with Family History of Pancreatic Cancer-Investigation of an NLP System Portability

Mehrabi, S., Krishnan, A., Roch, A. M., Schmidt, H., Li, D., Kesterson, J., Beesley, C., Dexter, P., Schmidt, M., Palakal, M. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 604-608 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Image-based material decomposition with a general volume constraint for photon-counting CT

Li, Z., Leng, S., Yu, L., Yu, Z. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9412. 94120T

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

Impact of number of repeated scans on model observer performance for a low-contrast detection task in CT

Ma, C., Yu, L., Chen, B., Vrieze, T., Favazza, C., Leng, S. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9416. 94160K

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Implementation of shear wave elastography on pediatric cardiac transducers with pulse-inversion harmonic imaging and time-aligned sequential tracking

Song, P., Bi, X., Mellema, D. C., Manduca, A., Urban, M. W., Chen, S. D. & Greenleaf, J. F., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329505

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Initial results from a prototype whole-body photon-counting computed tomography system

Yu, Z., Leng, S., Jorgensen, S. M., Li, Z., Gutjahr, R., Chen, B., Duan, X., Halaweish, A. F., Yu, L., Ritman, E. L. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9412. 94120W

Research output: Chapter in Book/Report/Conference proceedingConference contribution

36 Scopus citations

In-plane anisotropy method for the characterization of the elastic properties of anisotropic materials

Aristizabal, S., Nenadic, I. Z., Qiang, B., Amador, C., Greenleaf, J. F. & Urban, M. W., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329611

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Investigation of the effects of myocardial anisotropy for shear wave elastography using acoustic radiation force and harmonic vibration

Urban, M. W., Qiang, B., Song, P., Nenadic, I. Z., Chen, S. D. & Greenleaf, J. F., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329584

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

In vitro imaging of kidney stones using ultra-short echo-time magnetic resonance

Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Giesbrandt, J., Williams, J. & Haley, W. E., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 1466-1469 4 p. 7164153

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In vivo liver shear wave motion detection and shear wave speed comparison between fundamental and harmonic imaging

Amador, C., Song, P., Meixner, D. D., Chen, S. D. & Urban, M. W., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329482

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Lesion insertion in projection domain for computed tomography image quality assessment

Chen, B., Ma, C., Yu, Z., Leng, S., Yu, L. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9412. 94121R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Mental and physical workloads in a competitive laparoscopic skills training environment: A pilot study

Yu, D., Abdelrahman, A. M., Buckarma, E. H., Lowndes, B. R., Gas, B. L., Finnesgard, E. J., Abdelsattar, J. M., Pandian, T. K., El Khatib, M., Farley, D. R. & Hallbeck, S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 508-512 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Molecular diagnostics in the diagnosis of parasitic infection

Pritt, B. S., Jan 1 2015, Current and Emerging Technologies for the Diagnosis of Microbial Infections, 2015. Sails, A. & Tang, Y-W. (eds.). Academic Press Inc, p. 111-160 50 p. (Methods in Microbiology; vol. 42).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Motion artifacts in kidney stone imaging using dual-energy CT. A phantom study comparing single-source and dual-source scanners

Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Williams, J. & Haley, W. E., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 1159-1162 4 p. 7164078

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MRI & mechanobiology: New science at the intersection of engineering and medicine

Ehman, R. L., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9327. 932702-1

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-task learning with selective cross-task transfer for predicting bleeding and other important patient outcomes

Ngufor, C., Upadhyaya, S., Murphree, D., Kor, D. J. & Pathak, J., Dec 2 2015, Proceedings of the 2015 IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015. Institute of Electrical and Electronics Engineers Inc., 7344836

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations