Mayo Clinic

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Conference contribution
2016

Translational bioinformatics 101

Tenenbaum, J. D., Madhavan, S., Freimuth, R., Denny, J. C. & Frey, L., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 552-556 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasound surface wave elastography of the living human eye

Zhang, X., McLaren, J., Kazemi, A., Lin, S. C., Pruet, C. M. & Sit, A. J., Nov 1 2016, 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November. 7728510

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using synthetic clinical data to train an HMM-based POS tagger

Knoll, B. C., Melton, G. B., Liu, H. D., Xu, H. & Pakhomov, S. V. S., Apr 18 2016, 3rd IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2016. Institute of Electrical and Electronics Engineers Inc., p. 252-255 4 p. 7455882

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using ultrasound tomography to identify the distributions of density throughout the breast

Sak, M., Duric, N., Littrup, P., Sherman, M. E. & Gierach, G. L., 2016, Medical Imaging 2016: Ultrasonic Imaging and Tomography. SPIE, Vol. 9790. 979019

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2015

A clinical decision support system for preventing adverse reactions to blood transfusion

Murphree, D. H., Clifford, L., Lin, Y., Madde, N., Ngufor, C., Upadhyaya, S., Pathak, J. & Kor, D. J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 100-104 5 p. 7349680

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A domain ontology for the Non-Coding RNA field

Huang, J., Eilbeck, K., Blake, J. A., Dou, D., Natale, D. A., Ruttenberg, A., Smith, B., Zimmermann, M. T., Jiang, G. D., Lin, Y., Wu, B., He, Y., Zhang, S., Wang, X., Zhang, H., Liu, Z. & Tan, M., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 621-624 4 p. 7359755

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Advanced image reconstruction strategies for 4D prostate DCE-MRI: Steps toward clinical practicality

Stinson, E. G., Borisch, E. A., Froemming, A. T., Kawashima, A., Young, P. M., Warndahl, B. A., Grimm, R. C., Manduca, A., Riederer, S. J. & Trazasko, J. D., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9597. 959704

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing

Li, D., Rastegar Mojarad, M., Li, Y., Sohn, S., Mehrabi, S., Komandur Elayavilli, R., Yu, Y. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1033-1034 2 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Li, D., Rastegar-Mojarad, M., Elayavilli, R. K., Wang, Y., Mehrabi, S., Yu, Y., Sohn, S., Li, Y., Afzal, N. & Liu, H. D., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 315-324 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A heterogeneous multi-task learning for predicting RBC transfusion and perioperative outcomes

Ngufor, C., Upadhyaya, S., Murphree, D., Madde, N., Kor, D. J. & Pathak, J., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9105. p. 287-297 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9105).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A high frame-rate and low-cost Elastography system by generating shear waves through continuous vibration of the ultrasound transducer

Mellema, D. C., Song, P., Manduca, A., Urban, M. W., Kinnick, R. R., Greenleaf, J. F. & Chen, S. D., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329311

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Laplacian-based SNR measure: Shear stiffness estimation in MR elastography

Eon, R. S., Huynh, K. T., Lake, D. S. & Manduca, A., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9417. 94171K

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analysis of left atrial respiratory and cardiac motion for cardiac ablation therapy

Rettmann, M. E., Holmes III, D. R., Johnson, S. B., Lehmann, H. I., Robb, R. A. & Packer, D. L., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9415. 94152L

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

An efficient ADMM-based sparse reconstruction strategy for multi-level sampled MRI

Trazasko, J. D., Borisch, E. A., Weavers, P. T., Manduca, A., Young, P. M. & Riederer, S. J., Apr 24 2015, Conference Record - Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, Vol. 2015-April. p. 411-414 4 p. 7094474

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery

Rastegar-Mojarad, M., Elayavilli, R. K., Li, D., Prasad, R. & Liu, H. D., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 669-674 6 p. 7359766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

An experimental phantom study on the effect of calcifications on ultrasound shear wave elastography

Gregory, A., Bayat, M., Denis, M., Mehrmohammadi, M., Fatemi, M. & Alizad, A., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 3843-3846 4 p. 7319232

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL

Hong, N., Jiang, G. D., Pathak, J. & Chute, C. G., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1093 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Application of sociometer badges in simulated health environments: Can wearable devices quantify individual's workload?

Yu, D., Blocker, R., Hallbeck, S., Sir, M., Hellmich, T. & Pasupathy, K. S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 538-542 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Preliminary study of novice workload and performance during surgical simulation tasks for conventional vs. single incision laparoscopic techniques

Lowndes, B., Abdelrahman, A., McCrory, B. & Hallbeck, S., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 498-502 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

A sequential data analysis approach to electronic health record workflow

Kaufman, D. R., Furniss, S. K., Grando, M. A., Larson, D. & Burton, M. M., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 218. p. 120-125 6 p. (Studies in Health Technology and Informatics; vol. 218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature

Rastegar-Mojarad, M., Komandur Elayavilli, R., Li, D. & Liu, H. D., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 539-543 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution

Jiang, G. D., Solbrig, H. R., Kiefer, R., Rasmussen, L. V., Mo, H., Speltz, P., Thompson, W. K., Denny, J. C., Chute, C. G. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1098 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A systematic investigation of feasible acoustic windows and the impact of myocardial anisotropy for in vivo human cardiac shear wave elastography

Song, P., Bi, X., Mellema, D. C., Manduca, A., Urban, M. W., Greenleaf, J. F. & Chen, S. D., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329157

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A systematic prediction of adverse drug reactions using pre-clinical drug characteristics and spontaneous reports

Ngufor, C., Wojtusiak, J. & Pathak, J., Dec 8 2015, Proceedings - 2015 IEEE International Conference on Healthcare Informatics, ICHI 2015. Institute of Electrical and Electronics Engineers Inc., p. 76-81 6 p. 7349677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Automatic polyp detection in colonoscopy videos using an ensemble of convolutional neural networks

Tajbakhsh, N., Gurudu, S. R. & Liang, J., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 79-83 5 p. 7163821

Research output: Chapter in Book/Report/Conference proceedingConference contribution

63 Scopus citations

Bioinformatics strategies for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing

Champion, M. D., Hlady, R. A., Yan, H. D., Evans, J., Nie, J., Lee, J. H., Bogenberger, J., Nandakumar, K., Davila, J., Moore, R., Nair, A., O'Brien, D., Zhu, Y. X., Kortum, K. M., Ordog, T., Zhang, Z., Joseph, R. W., Stewart, A. K., Kocher, J-P., Jonasch, E. & 3 others, Robertson, K. D., Tibes, R. & Ho, T. H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. SciTePress, p. 163-170 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Block cipher speed and energy efficiency records on the MSP430: System design trade-offs for 16-Bit embedded applications

Buhrow, B., Riemer, P., Shea, M., Gilbert, B. K. & Daniel, E., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8895. p. 104-123 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8895).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

BmQGen: Biomedical query generator for knowledge discovery

Shen, F., Liu, H. D., Sohn, S., Larson, D. & Lee, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1092-1097 6 p. 7359833

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Bridging vaccine ontology and NCIt vaccine domain for cancer vaccine data integration and analysis

He, Y. & Jiang, G. D., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1515.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Challenges in estimation of tissue elasticity using low-frequency shear waves

Fatemi, M., Gregory, A., Bayat, M., Denis, M. & Alizad, A., 2015, 22nd International Congress on Sound and Vibration, ICSV 2015. International Institute of Acoustics and Vibrations

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical decision making: A framework for predicting Rx response

Sathyanarayana, A., Pathak, J., McCoy, R., Romero-Brufau, S., Panaziahar, M. & Srivastava, J., Jan 26 2015, IEEE International Conference on Data Mining Workshops, ICDMW. January ed. IEEE Computer Society, Vol. 2015-January. p. 1185-1188 4 p. 7022730

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Clinical Decision Support to Implement CYP2D6 Drug-Gene Interaction

Caraballo, P., Parkulo, M., Blair, D., Elliott, M., Schultz, C., Sutton, J., Rao, P., Bruflat, J., Bleimeyer, R., Crooks, J., Gabrielson, D., Nicholson, W., Rohrer Vitek, C., Wix, K., Bielinski, S. J., Pathak, J. & Kullo, I. J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 946 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Comparison of breast density measurements made using ultrasound tomography and mammography

Sak, M., Duric, N., Littrup, P., Bey-Knight, L., Krycia, M., Sherman, M. E., Boyd, N. & Gierach, G. L., 2015, Medical Imaging 2015: Ultrasonic Imaging and Tomography. SPIE, Vol. 9419. 94190R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Computer-aided pulmonary embolism detection using a novel vessel-aligned multi-planar image representation and convolutional neural networks

Tajbakhsh, N., Gotway, M. & Liang, J., 2015, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference, Proceedings. Springer Verlag, Vol. 9350. p. 62-69 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9350).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

34 Scopus citations

Connectivity of epileptic brain regions in wake and sleep

Klimes, P., Duque, J. J., Jurak, P., Halamek, J. & Worrell, G. A., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 2191-2194 4 p. 7318825

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Construction of realistic liver phantoms from patient images using 3D printer and its application in CT image quality assessment

Leng, S., Yu, L., Vrieze, T., Kuhlmann, J., Chen, B. & McCollough, C. H., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9412. 94124E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Control of a 2-DOF powered ankle-foot mechanism

Ficanha, E. M., Rastgaar, M. & Kaufman, K. R., Jun 29 2015, Proceedings - IEEE International Conference on Robotics and Automation. June ed. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-June. p. 6439-6444 6 p. 7140103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Detection of ulcerative colitis severity in colonoscopy video frames

Dahal, A., Oh, J., Tavanapong, W., Wong, J. & De Groen, P. C., Jul 9 2015, Proceedings - International Workshop on Content-Based Multimedia Indexing. IEEE Computer Society, Vol. 2015-July. 7153617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Developing a modular architecture for creation of rule-based clinical diagnostic criteria

Hong, N., Jiang, G. D., Pathak, J. & Chute, C. G., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1428.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model

Jiang, G. D., Solbrig, H. R., Pathak, J. & Chute, C. G., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 1097 1 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Development of an MR and CT compatible non-invasive temperature based optical fiber respiration sensor for use in radiotherapy

Smith, A., Kim, S., Serago, C., Hintenlang, K., Pooley, R. & Hintenlang, D., 2015, IFMBE Proceedings. Springer Verlag, Vol. 51. p. 603-606 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

DICOM index tracker enterprise: Advanced system for enterprise-wide quality assurance and patient safety monitoring

Zhang, M., Pavlicek, W., Panda, A., Langer, S. G., Morin, R., Fetterly, K. A., Paden, R., Hanson, J., Wu, L. W. & Wu, T., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9418. 94180L

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Dimensionality reduction via graph structure learning

Mao, Q., Wang, L., Goodison, S. & Sun, Y., Aug 10 2015, KDD 2015 - Proceedings of the 21st ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, Vol. 2015-August. p. 765-774 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

21 Scopus citations

Effects of Plasma Transfusion on Perioperative Bleeding Complications: A Machine Learning Approach

Ngufor, C., Murphree, D., Upadhyaya, S., Madde, N., Kor, D. J. & Pathak, J., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 721-725 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Empowering personalized medicine with big data and semantic web technology: Promises, challenges, and use cases

Panahiazar, M., Taslimitehrani, V., Jadhav, A. & Pathak, J., Jan 7 2015, Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014. Chang, W., Huan, J., Cercone, N., Pyne, S., Honavar, V., Lin, J., Hu, X. T., Aggarwal, C., Mobasher, B., Pei, J. & Nambiar, R. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 790-795 6 p. 7004307. (Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

36 Scopus citations

Ensemble learning approaches to predicting complications of blood transfusion

Murphree, D., Ngufor, C., Upadhyaya, S., Madde, N., Clifford, L., Kor, D. J. & Pathak, J., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 7222-7225 4 p. 7320058

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Evaluating arterial and plaque elasticity with shear wave elastography in an ex vivo porcine model

Widman, E., Maksuti, E., Carrascal, C. A., Urban, M. W. & Larsson, M., Nov 13 2015, 2015 IEEE International Ultrasonics Symposium, IUS 2015. Institute of Electrical and Electronics Engineers Inc., 7329503

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Examining the successful outcomes of multidisciplinary teamwork in a code situation using the shared mental model framework

Moore, N. K., Squire, K. M. & Blocker, R., Jan 1 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 513-517 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Feasibility of modeling HL7 FHIR profiles using RDF shape expressions language

Solbrig, H. R., Prud'hommeaux, E., Sharma, D. K., Chute, C. G. & Jiang, G. D., 2015, CEUR Workshop Proceedings. CEUR-WS, Vol. 1546. p. 208-209 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feasibility of visualizing higher regions of Shannon entropy in atrial fibrillation patients

Arunachalam, S. P., Mulpuru, S., Friedman, P. A. & Tolkacheva, E. G., Nov 4 2015, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. Institute of Electrical and Electronics Engineers Inc., Vol. 2015-November. p. 4499-4502 4 p. 7319394

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations