Mayo Clinic

Research Output 1961 2020

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Conference contribution
2012
5 Citations (Scopus)

High performance non-uniform FFT on modern X86-based multi-core systems

Kalamkar, D. D., Trzaskoz, J. D., Sridharan, S., Smelyanskiy, M., Kim, D., Manduca, A., Shu, Y., Bernstein, M. A., Kaul, B. & Dubey, P., 2012, Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium, IPDPS 2012. p. 449-460 12 p. 6267881

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fast Fourier transforms
Convolution
Magnetic resonance imaging
Servers
Radio astronomy
18 Citations (Scopus)

How do spatial and angular resolution affect brain connectivity maps from diffusion MRI?

Zhan, L., Franc, D., Patel, V., Jahanshad, N., Jin, Y., Mueller, B. A., Bernstein, M. A., Borowski, B. J., Jack, C. R. J., Toga, A. W., Lim, K. O. & Thompson, P. M., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 1-4 4 p. 6235469

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffusion tensor imaging
Diffusion Magnetic Resonance Imaging
Diffusion Tensor Imaging
Magnetic resonance imaging
Brain

Internal pressure of the human meniscal attachments during physiological and pathological loading

Abraham, A. C., Kaufman, K. R. & Donahue, T. L. H., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 451-452 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Liver segmentation using structured sparse representations

Singh, V., Wang, D., Tewfik, A. H. & Erickson, B. J., 2012, ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings. p. 565-568 4 p. 6287942

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Liver
Glossaries
Surgery
Tumors
Masks
1 Citation (Scopus)

Managing interoperability and compleXity in health systems - MIXHS'12

Tao, C. & Bouamrane, M. M., 2012, ACM International Conference Proceeding Series. p. 2758-2759 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interoperability
Health
Knowledge engineering
Decision support systems
Information management
2 Citations (Scopus)

Measure elasticity and viscosity using the out-of-plane shear wave

Zhao, H., Qiang, B., Amador, C., Song, P., Urban, M. W., Kinnick, R. R., Greenleaf, J. F. & Chen, S. D., 2012, IEEE International Ultrasonics Symposium, IUS. p. 212-215 4 p. 6562185

Research output: Chapter in Book/Report/Conference proceedingConference contribution

S waves
elastic properties
viscosity
wave propagation
wave attenuation

Measuring bladder viscoelasticity using ultrasound

Nenadic, I. Z., Qiang, B., Urban, M. W., Nabavizadeh, A., Greenleaf, J. F. & Fatemi, M., 2012, IEEE International Ultrasonics Symposium, IUS. p. 105-108 4 p. 6562369

Research output: Chapter in Book/Report/Conference proceedingConference contribution

bladder
viscoelasticity
Lamb waves
phase velocity
wave dispersion

Model-free compression creep methods for differentiation of lesion from background tissue

Nabavizadehrafsanjani, A., Amador, C., Urban, M. W., Alizad, A., Agrawal, O., Greenleaf, J. F., Insana, M. F. & Fatemi, M., 2012, IEEE International Ultrasonics Symposium, IUS. p. 2533-2535 3 p. 6562517

Research output: Chapter in Book/Report/Conference proceedingConference contribution

lesions
tangents
3 Citations (Scopus)

Modeling UIMA type system using web ontology language - Towards interoperability among UIMA-based NLP tools

Liu, H. D., Wu, S., Tao, C. & Chute, C., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 31-36 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Language
Natural language processing
Information management
Ontology

Multivariate principal oscillation pattern analysis of ICA sources during seizure

Mullen, T., Worrell, G. A. & Makeig, S., 2012, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 2921-2924 4 p. 6346575

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Independent component analysis
Electroencephalography
Surgery
Seizures
Damping

Muscle categorization using PDF estimation and Naive Bayes classification

Adel, T. M., Smith, B. E. & Stashuk, D. W., 2012, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 2619-2622 4 p. 6346501

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Probability density function
Muscle
Muscles
Normal distribution
Neuromuscular Diseases
1 Citation (Scopus)

Muscle categorization using quantitative needle electromyography: A 2-stage Gaussian mixture model based approach

Abdelmaseeh, M., Poupart, P., Smith, B. & Stashuk, D., 2012, Proceedings - 2012 11th International Conference on Machine Learning and Applications, ICMLA 2012. Vol. 1. p. 548-553 6 p. 6406621

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electromyography
Needles
Muscle
Disease
decision structure
1 Citation (Scopus)

Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data

Li, D., Tao, C., Liu, H. D. & Chute, C., 2012, Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012. p. 708-715 8 p. 6382894

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Health
Hidden Markov models
Parameter estimation
Big data
11 Citations (Scopus)

Optimizing semantic MEDLINE for translational science studies using semantic web technologies

Tao, C., Zhang, Y., Jiang, G. D., Bouamrane, M. M. & Chute, C. G., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 53-57 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Science studies
Web technology
Semantic web
Resources
Data base
1 Citation (Scopus)

Phantom-based MRI corrections and power to track brain change

Ching, C. R. K., Hua, X., Ward, C., Gunter, J., Bernstein, M. A., Jack, C. R. J., Weiner, M. W. & Thompson, P. M., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 1172-1175 4 p. 6235769

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neuroimaging
Magnetic resonance imaging
Brain
Alzheimer Disease
Calibration
22 Citations (Scopus)

Predicting temporal lobe volume on MRI from genotypes using L 1-L 2 regularized regression

Kohannim, O., Hibar, D. P., Jahanshad, N., Stein, J. L., Hua, X., Toga, A. W., Jack, C. R. J., Weinen, M. W. & Thompson, P. M., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 1160-1163 4 p. 6235766

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Temporal Lobe
Magnetic resonance
Genes
Genotype
Magnetic Resonance Imaging

Prioritization of hospital laboratory orders considering cancellation probabilities

Ghavrish, A., Sir, M. & Pasupathy, K. S., 2012, 62nd IIE Annual Conference and Expo 2012. Institute of Industrial Engineers, p. 1717-1723 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Personnel
Processing
Costs
1 Citation (Scopus)

Proposed SKOS extensions for bioportal terminology services

Tao, C., Noy, N. F., Solbrig, H. R., Shah, N. H., Musen, M. A. & Chute, C. G., 2012, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 7185 LNCS. p. 342-349 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7185 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Ontology
Browsing
Semantic Web
World Wide Web
1 Citation (Scopus)

Quantification of pulmonary vein morphology using centerline tracking

Rettmann, M. E., Gunawan, M. S., Holmes III, D. R., Packer, D. L. & Robb, R. A., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 816-819 4 p. 6235673

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pulmonary Veins
Veins
Ablation
Atrial Fibrillation
Volume rendering
5 Citations (Scopus)

Quantitative image analytics for stratified pulmonary medicine

Raghunath, S., Rajagopalan, S., Karwoski, R., Bartholmai, B. J. & Robb, R., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 1779-1782 4 p. 6235926

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pulmonary Medicine
Pulmonary diseases
Pathology
Medicine
Lung
2 Citations (Scopus)

Real-time phase boundary detection for colonoscopy videos using motion vector templates

Nawarathna, R., Oh, J., Muthukudage, J., Tavanapong, W., Wong, J. & De Groen, P. C., 2012, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 7601 LNCS. p. 116-125 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7601 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Boundary Detection
Motion Vector
Phase boundaries
Template
Real-time
1 Citation (Scopus)

Requirements and strategy for the development of a pediatric drug ontology

Richesson, R., Pathak, J., McLeod, W., Blackmon, G. & Vehik, K., 2012, CEUR Workshop Proceedings. Vol. 897.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pediatrics
Terminology
Ontology
Knowledge representation
Antibiotics

Shape-based analysis of right ventricular dysfunction associated with acute pulmonary embolism

Tajbakhsh, N., Xue, W., Wu, H., Liang, J., McMahon, E. M. & Belohlavek, M., 2012, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8317. 83170G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

embolisms
Right Ventricular Dysfunction
Biomarkers
Pulmonary Embolism
Heart Ventricles

Shear wave speed measurement using repeated short push pulses

Zhao, H., Amador, C., Urban, M. W., Song, P., Greenleaf, J. F. & Chen, S. D., 2012, IEEE International Ultrasonics Symposium, IUS. p. 1854-1857 4 p. 6562182

Research output: Chapter in Book/Report/Conference proceedingConference contribution

S waves
pulses
scanners
health
high voltages
13 Citations (Scopus)

Small world network measures predict white matter degeneration in patients with early-stage mild cognitive impairment

Nir, T., Jahanshad, N., Jack, C. R. J., Weiner, M. W., Toga, A. W. & Thompson, P. M., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 1405-1408 4 p. 6235831

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Small-world networks
Anisotropy
Brain
Diffusion tensor imaging
Corpus Callosum
1 Citation (Scopus)

Spectral components of the P300 speller response in and adjacent to the hippocampus

Krusienski, D. J. & Shih, J. J., 2012, Conference Proceedings - IEEE International Conference on Systems, Man and Cybernetics. p. 274-277 4 p. 6377713

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electroencephalography
Electrodes
Brain computer interface
Frequency bands
Brain

Step count validation of a tri-axial accelerometer during walking and jogging

Fortune, E., Lugade, V., Morrow, M. M. M. & Kaufman, K. R., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1065-1066 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accelerometers

Systematic analysis of cross-institutional medication description patterns in clinical notes

Sohn, S., Murphy, S. P., Jonnalagadda, S. R., Wagholikar, K., Wu, S. T., Chute, C. G., Liu, H. D. & Halgrim, S., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 118 1 p. 6366211

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Natural Language Processing
Processing
2 Citations (Scopus)

The Linked Clinical Data project: Applying Semantic Web technologies for clinical and translational research using electronic medical records

Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, ACM International Conference Proceeding Series. p. 94-95 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic medical equipment
Semantic Web
Genes
Semantics
Throughput
12 Citations (Scopus)

Towards event sequence representation, reasoning and visualization for EHR data

Tao, C., Wongsuphasawat, K., Clark, K., Plaisant, C., Shneiderman, B. & Chute, C. G., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 801-805 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Causality
Sequence Analysis
Retrospective Studies
Research
2 Citations (Scopus)

Using semantic web technology to support ICD-11 textual definitions authoring

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2012, ACM International Conference Proceeding Series. p. 38-44 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
1 Citation (Scopus)

Validation and discovery of genotype-phenotype associations in chronic diseases using linked data

Pathak, J., Kiefer, R., Freimuth, R. & Chute, C., 2012, Studies in Health Technology and Informatics. Vol. 180. p. 549-553 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genetic Association Studies
Semantic Web
Semantics
Single Nucleotide Polymorphism
Chronic Disease
1 Citation (Scopus)

Validation of geometric measurements of the left atrium and pulmonary veins for analysis of reverse structural remodeling following ablation therapy

Rettmann, M. E., Holmes III, D. R., Gunawan, M. S., Ge, X., Karwoski, R. A., Breen, J. F., Packer, D. L. & Robb, R. A., 2012, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8317. 831724

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computerized tomography
Pulmonary Veins
Ablation
Heart Atria
veins

Validation of static and dynamic activity detection using a tri-axial accelerometer and video

Lugade, V., Fortune, E., Morrow, M. M. M. & Kaufman, K. R., 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1067-1068 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accelerometers
2011
4 Citations (Scopus)

A case study of ICD-11 anatomy value set extraction from SNOMED CT

Jiang, G. D., Solbrig, H. R., Chalmers, R. J. G., Spackman, K., Rector, A. L. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 133-138 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Oncology
4 Citations (Scopus)

An exact algorithm for providing multi-perspective event coverage in Wireless Multimedia Sensor Networks

Yildiz, E., Akkaya, K., Sisikoglu, E. & Sir, M., Sep 12 2011, IWCMC 2011 - 7th International Wireless Communications and Mobile Computing Conference. p. 382-387 6 p. 5982564

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor networks
multimedia
coverage
Cameras
event

A noninvasive surface wave method for measuring the complex modulus of viscoelastic tissues

Qiang, B., Greenleaf, J. F. & Zhang, X., 2011, Proceedings - 2011 International Conference on Intelligent Computation and Bio-Medical Instrumentation, ICBMI 2011. p. 275-278 4 p. 6131762

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surface waves
Tissue
Elastic moduli
Gradient methods
Constitutive models

An ontological representation of adverse drug events

Jiang, G. D., Duke, J. D., Pathak, J. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 329-331 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thesauri
Decision support systems
41 Citations (Scopus)

An optimization-based approach for connecting partitioned mobile sensor/Actuator Networks

Sir, M., Senturk, I. F., Sisikoglu, E. & Akkaya, K., Jul 26 2011, 2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011. p. 525-530 6 p. 5928869

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Actuators
Sensors
Wireless networks
travel
Computational efficiency
16 Citations (Scopus)

A simple statistical model and association rule filtering for classification

Simon, G. J., Kumar, V. & Li, P. W., 2011, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 823-831 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Classifiers
Statistical Models
Logistics
Labels
1 Citation (Scopus)

A simulation-based methodology for uncertainty modeling and analysis of clinical laboratory measurement processes

Ramamohan, V., Chandrasekar, V., Yih, Y., Abbott, J. & Klee, G., 2011, 61st Annual IIE Conference and Expo Proceedings. Institute of Industrial Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical laboratories
Specifications
Uncertainty
Quality control
Assays
5 Citations (Scopus)

A simulation tool to support recovery bed planning for surgical patients

Marmor, Y. N., Rohleder, T. R., Huschka, T., Cook, D. & Thompson, J., 2011, Proceedings - Winter Simulation Conference. p. 1333-1339 7 p. 6147854

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Service Levels
Simulation Tool
Cardiovascular Surgery
Surgery
3 Citations (Scopus)

A user friendly system for ultrasound carotid intima-media thickness image interpretation

Zhu, X., Kendall, C. B., Hurst, R. T. & Liang, J., 2011, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7968. 79681G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Carotid Intima-Media Thickness
Ultrasonics
Thickness measurement
Snakes
snakes
5 Citations (Scopus)

Automated detection of Focal Cortical Dysplasia lesions on T1-weighted MRI using volume-based distributional features

Yang, C. A., Kaveh, M. & Erickson, B. J., 2011, Proceedings - International Symposium on Biomedical Imaging. p. 865-870 6 p. 5872541

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Malformations of Cortical Development
Magnetic resonance imaging
Labeling
Tissue
Experiments
1 Citation (Scopus)

Automatic verification and validation of a CAS simulation of an intensive care unit

Eichelberger, C. N., Hadzikadic, M., Gajic, O. & Li, G., 2011, AAAI Fall Symposium - Technical Report. Vol. FS-11-03. p. 44-48 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Adaptive systems
3 Citations (Scopus)

Automating pin field modeling for SerDes channel simulations

Degerstrom, M. J., Zahn, S. K., McCoy, B. O., Daniel, E. S. & Gilbert, B. K., 2011, Proceedings - Electronic Components and Technology Conference. p. 501-508 8 p. 5898558

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automation
Printed circuit boards

Biomedical spectral x-ray imaging; Promises and challenges

Jorgensen, S. M., Eaker, D. R. & Ritman, E. L., 2011, Proceedings of SPIE - The International Society for Optical Engineering. Vol. 8140.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectral Imaging
X-ray Imaging
Pixel
Pixels
pixels
3 Citations (Scopus)

Biomedical spectral x-ray imaging; Promises and challenges

Jorgensen, S. M., Eaker, D. R. & Ritman, E. L., 2011, Proceedings of SPIE - The International Society for Optical Engineering. Vol. 8139. 813901

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectral Imaging
X-ray Imaging
Pixel
Pixels
pixels

Biphasic Delivery through a Multichannel Collagen Neural Conduit

Yao, L., Daly, B., Carroll, O., Newland, B., Windebank, A. J. & Pandit, A., 2011, 24th European Conference on Biomaterials - Annual Conference of the European Society for Biomaterials.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Collagen
19 Citations (Scopus)

Boosting power to detect genetic associations in imaging using multi-locus, genome-wide scans and ridge regression

Kohannim, O., Hibar, D. P., Stein, J. L., Jahanshad, N., Jack, C. R. J., Weiner, M. W., Toga, A. W. & Thompson, P. M., 2011, Proceedings - International Symposium on Biomedical Imaging. p. 1855-1859 5 p. 5872769

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nucleotides
Polymorphism
Single Nucleotide Polymorphism
Genes
Genome