Laboratory Medicine and Pathology

Research Output 1976 2020

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2020

Epithelial to mesenchymal plasticity: role in cancer progression

Raja, R., Pandey, A. & Kumar, P., Jan 1 2020, In : Frontiers in bioscience (Landmark edition). 25, p. 838-873 36 p.

Research output: Contribution to journalArticle

Plasticity
Tumors
Cells
Circulating Neoplastic Cells
Epithelial-Mesenchymal Transition

Extra-cellular vesicles carry proteome of cancer hallmarks

Carvalho, A. S., Baeta, H., Silva, B. C., Moraes, M. C. S., Bodo, C., Beck, H. C., Rodriguez, M. S., Saraswat, M., Pandey, A. & Matthiesen, R., Jan 1 2020, In : Frontiers in bioscience (Landmark edition). 25, p. 398-436 39 p.

Research output: Contribution to journalArticle

Proteome
Cells
Tumors
Neoplasms
Oncogene Proteins

Hypothermia and nutrient deprivation alter viability of human adipose-derived mesenchymal stem cells

Kubrova, E., Qu, W., Galvan, M. L., Paradise, C. R., Yang, J., Dietz, A. B., Dudakovic, A., Smith, J. & van Wijnen, A. J., Jan 5 2020, In : Gene. 722, 144058.

Research output: Contribution to journalArticle

Hypothermia
Mesenchymal Stromal Cells
Food
Temperature
Messenger RNA
2019
2 Citations (Scopus)

53BP1 as a potential predictor of response in PARP inhibitor-treated homologous recombination-deficient ovarian cancer

Hurley, R. M., Wahner Hendrickson, A. E., Visscher, D. W., Ansell, P., Harrell, M. I., Wagner, J. M., Negron, V., Goergen, K. M., Maurer, M. J., Oberg, A. L., Meng, X. W., Flatten, K. S., De Jonge, M. J. A., Van Herpen, C. D., Gietema, J. A., Koornstra, R. H. T., Jager, A., den Hollander, M. W., Dudley, M., Shepherd, S. P. & 2 others, Swisher, E. M. & Kaufmann, S. H., Jan 1 2019, (Accepted/In press) In : Gynecologic Oncology.

Research output: Contribution to journalArticle

Homologous Recombination
Ovarian Neoplasms
DNA End-Joining Repair
Neoplasms
Gene Deletion

Accurate Precursor Mass Assignment Improves Peptide Identification in Data-Independent Acquisition Mass Spectrometry

Mun, D. G., Nam, D., Kim, H., Pandey, A. & Lee, S. W., Jul 2 2019, In : Analytical Chemistry. 91, 13, p. 8453-8460 8 p.

Research output: Contribution to journalArticle

Mass spectrometry
Data acquisition
Peptides
Mass spectrometers
Proteins
1 Citation (Scopus)

A clinical guide to hereditary cancer panel testing: evaluation of gene-specific cancer associations and sensitivity of genetic testing criteria in a cohort of 165,000 high-risk patients

LaDuca, H., Polley, E., Yussuf, A., Hoang, L., Gutierrez, S., Hart, S., Yadav, S., Hu, C., Na, J., Goldgar, D. E., Fulk, K., Smith, L. P., Horton, C., Profato, J., Pesaran, T., Gau, C. L., Pronold, M., Davis, B. T., Chao, E. C., Couch, F. J. & 1 others, Dolinsky, J. S., Jan 1 2019, (Accepted/In press) In : Genetics in Medicine.

Research output: Contribution to journalArticle

Open Access
Neoplasm Genes
Genetic Testing
Hereditary Nonpolyposis Colorectal Neoplasms
Neoplasms
Melanoma

A combination of the immunohistochemical markers CK7 and SATB2 is highly sensitive and specific for distinguishing primary ovarian mucinous tumors from colorectal and appendiceal metastases

Meagher, N. S., Wang, L., Rambau, P. F., Intermaggio, M. P., Huntsman, D. G., Wilkens, L. R., El-Bahrawy, M. A., Ness, R. B., Odunsi, K., Steed, H., Herpel, E., Anglesio, M. S., Zhang, B., Lambie, N., Swerdlow, A. J., Lubiński, J., Vierkant, R. A., Goode, E. L., Menon, U., Toloczko-Grabarek, A. & 62 others, Oszurek, O., Bilic, S., Talhouk, A., García-Closas, M., Wang, Q., Tan, A., Farrell, R., Kennedy, C. J., Jimenez-Linan, M., Sundfeldt, K., Etter, J. L., Menkiszak, J., Goodman, M. T., Klonowski, P., Leung, Y., Winham, S. J., Moysich, K. B., Behrens, S., Kluz, T., Edwards, R. P., Gronwald, J., Modugno, F., Hernandez, B. Y., Chow, C., Kelemen, L. E., Keeney, G. L., Carney, M. E., Natanzon, Y., Robertson, G., Sharma, R., Gayther, S. A., Alsop, J., Luk, H., Karpinskyj, C., Campbell, I., Sinn, P., Gentry-Maharaj, A., Coulson, P., Chang-Claude, J., Shah, M., Widschwendter, M., Tang, K., Schoemaker, M. J., Koziak, J. M., Cook, L. S., Brenton, J. D., Daley, F., Kristjansdottir, B., Mateoiu, C., Larson, M. C., Harnett, P. R., Jung, A., deFazio, A., Gorringe, K. L., Pharoah, P. D. P., Minoo, P., Stewart, C., Bathe, O. F., Gui, X., Cohen, P., Ramus, S. J. & Köbel, M., Jan 1 2019, (Accepted/In press) In : Modern Pathology.

Research output: Contribution to journalArticle

Colorectal Neoplasms
Neoplasm Metastasis
Neoplasms
Gastrointestinal Neoplasms
Appendiceal Neoplasms

A comparison of adult rhabdomyosarcoma and high-grade neuroendocrine carcinoma of the urinary bladder reveals novel PPP1R12A fusions in rhabdomyosarcoma

Gupta, S., Sosa, C. P., Kosari, F., Folpe, A., Bhinge, K. N., Yang, L., Agahi, A., Johnson, S. H., Frank, I., Boorjian, S. A., Hansel, D. E., Al-Ahmadie, H. A., Reuter, V. E., Vasmatzis, G., Jimenez, R. E., Herrera-Hernandez, L. & Cheville, J., Jun 1 2019, In : Human Pathology. 88, p. 48-59 12 p.

Research output: Contribution to journalArticle

Neuroendocrine Carcinoma
Rhabdomyosarcoma
Urinary Bladder
RNA Sequence Analysis
Alveolar Rhabdomyosarcoma

ACTA1-myopathy with prominent finger flexor weakness and rimmed vacuoles

Liewluck, T., Niu, Z., Moore, S. A., Alsharabati, M. & Milone, M., Jan 1 2019, In : Neuromuscular Disorders.

Research output: Contribution to journalArticle

Muscular Diseases
Vacuoles
Nuclear Family
Fathers
Fingers
1 Citation (Scopus)

Acute leukemias harboring KMT2A/MLLT10 fusion: a 10-year experience from a single genomics laboratory

Peterson, J. F., Sukov, W. R., Pitel, B. A., Smoley, S. A., Pearce, K. E., Meyer, R. G., Williamson, C. M., Smadbeck, J., Vasmatzis, G., Hoppman, N. L., Greipp, P. T., Baughn, L. & Ketterling, R. P., Jan 1 2019, In : Genes Chromosomes and Cancer.

Research output: Contribution to journalArticle

Genomics
Leukemia
Fluorescence In Situ Hybridization
Acute Myeloid Leukemia
Precursor Cell Lymphoblastic Leukemia-Lymphoma
3 Citations (Scopus)

Addressing the diagnostic gaps in pyruvate kinase deficiency: Consensus recommendations on the diagnosis of pyruvate kinase deficiency

with the endorsement of EuroBloodNet, the European Reference Network in Rare Hematological Diseases, Jan 1 2019, In : American Journal of Hematology. 94, 1, p. 149-161 13 p.

Research output: Contribution to journalArticle

Congenital Hemolytic Anemia
Workflow
Enzyme Assays
Glycolysis
Pyruvate Kinase Deficiency of Red Cells

A four-gene transcript score to predict metastatic-lethal progression in men treated for localized prostate cancer: Development and validation studies

Cheng, A., Zhao, S., FitzGerald, L. M., Wright, J. L., Kolb, S., Karnes, R. J., Jenkins, R. B., Davicioni, E., Ostrander, E. A., Feng, Z., Fan, J. B., Dai, J. Y. & Stanford, J. L., Jan 1 2019, In : Prostate. 79, 14, p. 1589-1596 8 p.

Research output: Contribution to journalArticle

Validation Studies
ROC Curve
Prostatic Neoplasms
Area Under Curve
Neoplasm Grading

A global genotyping survey of Strongyloides stercoralis and Strongyloides fuelleborni using deep amplicon sequencing

Barratt, J. L. N., Lane, M., Talundzic, E., Richins, T., Robertson, G., Formenti, F., Pritt, B., Verocai, G., De Souza, J. N., Soares, N. M., Traub, R., Buonfrate, D. & Bradbury, R. S., Jan 1 2019, In : PLoS Neglected Tropical Diseases. 13, 9, e0007609.

Research output: Contribution to journalArticle

Open Access
Strongyloides
Strongyloides stercoralis
High-Throughput Nucleotide Sequencing
Primates
Genotype

Albumin In Situ Hybridization Can Be Positive in Adenocarcinomas and Other Tumors From Diverse Sites

Nasir, A., Lehrke, H. D., Mounajjed, T., Said, S., Zhang, L., Yasir, S., Shah, S. M., Chandan, V. S., Smyrk, T. C., Moreira, R. K., Boland Froemming, J. M., Herrera Hernandez, L. P., Wu, T-T. & Graham, R., Jul 5 2019, In : American journal of clinical pathology. 152, 2, p. 190-199 10 p.

Research output: Contribution to journalArticle

In Situ Hybridization
Albumins
Adenocarcinoma
Neoplasms
Cholangiocarcinoma
1 Citation (Scopus)

Algorithmic evaluation of hereditary erythrocytosis: Pathways and caveats

Oliveira, J., May 1 2019, In : International Journal of Laboratory Hematology. 41, S1, p. 89-94 6 p.

Research output: Contribution to journalArticle

Open Access
Pediatrics
Erythropoietin
Decision trees
Decision Trees
Polycythemia
2 Citations (Scopus)

American Registry of Pathology Expert Opinions: Immunohistochemical evaluation of classic Hodgkin lymphoma

O'Malley, D. P., Dogan, A., Fedoriw, Y., Medeiros, L. J., Ok, C. Y. & Salama, M., Apr 1 2019, In : Annals of Diagnostic Pathology. 39, p. 105-110 6 p.

Research output: Contribution to journalArticle

Expert Testimony
Hodgkin Disease
Registries
Differential Diagnosis
Pathology
1 Citation (Scopus)

A missense variant in FTCD is associated with arsenic metabolism and toxicity phenotypes in Bangladesh

Pierce, B. L., Tong, L., Dean, S., Argos, M., Jasmine, F., Rakibuz-Zaman, M., Sarwar, G., Islam, M. T., Shahriar, H., Islam, T., Rahman, M., Yunus, M., Lynch, V. J., Oglesbee, D., Graziano, J. H., Kibriya, M. G., Gamble, M. V. & Ahsan, H., Mar 1 2019, In : PLoS genetics. 15, 3, p. e1007984

Research output: Contribution to journalArticle

Open Access
hydroxymethyltransferases and formyltransferases
Bangladesh
Arsenic
arsenic
phenotype

Amplification-free long-read sequencing of TCF4 expanded trinucleotide repeats in Fuchs Endothelial Corneal Dystrophy

Wieben, E. D., Aleff, R. A., Basu, S., Sarangi, V., Bowman, B., McLaughlin, I. J., Mills, J. R., Butz, M. L., Highsmith, W. E. J., Ida, C. M., Ekholm, J. M., Baratz, K. & Fautsch, M. P., Jan 1 2019, In : PloS one. 14, 7, e0219446.

Research output: Contribution to journalArticle

Open Access
Fuchs' Endothelial Dystrophy
Trinucleotide Repeat Expansion
Trinucleotide Repeats
Amplification
microsatellite repeats

Amplification of 9p24.1 in diffuse large B-cell lymphoma identifies a unique subset of cases that resemble primary mediastinal large B-cell lymphoma

Wang, Y., Wenzl, K., Manske, M. K., Asmann, Y., Sarangi, V., Greipp, P. T., Krull, J. E., Hartert, K., He, R., Feldman, A. L., Maurer, M. J., Slager, S. L., Nowakowski, G. S., Habermann, T. M., Witzig, T. E., Link, B. K., Ansell, S. M., Cerhan, J. R. & Novak, A. J., Sep 1 2019, In : Blood cancer journal. 9, 9, 73.

Research output: Contribution to journalArticle

Open Access
Lymphoma, Large B-Cell, Diffuse
B-Cell Lymphoma
Immunotherapy
Lymphoma
Hodgkin Disease

Anaplastic Ependymoma and Posterior Fossa Grouping in a Patient With H3K27ME3 Loss of Expression but Chromosomal Imbalance

Routman, D. M., Raghunathan, A., Giannini, C., Mahajan, A., Beltran, C., Nagib, M. G., Nageswara Rao, A. A., Skrypek, M. M. & Laack, N. N., Jan 1 2019, In : Advances in Radiation Oncology.

Research output: Contribution to journalArticle

Open Access
Ependymoma

A near-haploid clone harboring a BCR/ABL1 gene fusion in an adult patient with newly diagnosed B-lymphoblastic leukemia

Peterson, J. F., Ketterling, R. P., Huang, L., Finn, L. E., Shi, M., Hoppman, N. L., Greipp, P. T. & Baughn, L., Sep 1 2019, In : Genes Chromosomes and Cancer. 58, 9, p. 665-668 4 p.

Research output: Contribution to journalArticle

Gene Fusion
Haploidy
Precursor Cell Lymphoblastic Leukemia-Lymphoma
Clone Cells
Chromosomes

An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set

DeRycke, M. S., Larson, M. C., Nair, A. A., McDonnell, S. K., French, A. J., Tillmans, L. S., Riska, S. M., Baheti, S., Fogarty, Z. C., Larson, N., O'Brien, D. R., Cheville, J., Wang, L., Schaid, D. J. & Thibodeau, S. N., Apr 1 2019, In : PloS one. 14, 4, e0214588.

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
prostatic neoplasms
Prostate
quantitative trait loci
Prostatic Neoplasms

Angiosarcoma of the Liver: Clinicopathologic Features and Morphologic Patterns

Yasir, S. & Torbenson, M., May 1 2019, In : American Journal of Surgical Pathology. 43, 5, p. 581-590 10 p.

Research output: Contribution to journalArticle

Hemangiosarcoma
Liver
Blood Vessels
Neoplasms
Hemangioma

A novel splice site mutation in IFNGR2 in patients with primary immunodeficiency exhibiting susceptibility to mycobacterial diseases

Bandari, A. K., Muthusamy, B., Bhat, S., Govindaraj, P., Rajagopalan, P., Dalvi, A., Shankar, S., Raja, R., Reddy, K. S., Madkaikar, M. & Pandey, A., Jan 1 2019, In : Frontiers in immunology. 10, AUG, 1964.

Research output: Contribution to journalArticle

Open Access
RNA Splice Sites
Mutation
Fibroblasts
Mycobacterium
Siblings

Antemortem volume loss mirrors TDP-43 staging in older adults with non-frontotemporal lobar degeneration

Bejanin, A., Murray, M. E., Martin, P., Botha, H., Tosakulwong, N., Schwarz, C. G., Senjem, M. L., Chételat, G., Kantarci, K., Jack, C. R., Boeve, B. F., Knopman, D. S., Petersen, R. C., Giannini, C., Parisi, J. E., Dickson, D. W., Whitwell, J. L. & Josephs, K. A., Nov 1 2019, In : Brain : a journal of neurology. 142, 11, p. 3621-3635 15 p.

Research output: Contribution to journalArticle

Temporal Lobe
Pathology
Alzheimer Disease
Brain
Frontotemporal Lobar Degeneration

A phase 1 and randomized, placebo-controlled phase 2 trial of bevacizumab plus dasatinib in patients with recurrent glioblastoma: Alliance/North Central Cancer Treatment Group N0872

Galanis, E., Anderson, S. K., Twohy, E. L., Carrero, X. W., Dixon, J. G., Tran, D. D., Jeyapalan, S. A., Anderson, D. M., Kaufmann, T. J., Feathers, R. W., Giannini, C., Buckner, J. C., Anastasiadis, P. Z. & Schiff, D., Jan 1 2019, In : Cancer.

Research output: Contribution to journalArticle

Glioblastoma
Placebos
Neoplasms
Therapeutics
National Cancer Institute (U.S.)
1 Citation (Scopus)

A Phase II Randomized Trial of Panitumumab, Erlotinib, and Gemcitabine Versus Erlotinib and Gemcitabine in Patients with Untreated, Metastatic Pancreatic Adenocarcinoma: North Central Cancer Treatment Group Trial N064B (Alliance)

Halfdanarson, T. R., Foster, N. R., Kim, G. P., Meyers, J. P., Smyrk, T. C., McCullough, A. E., Ames, M. M., Jaffe, J. P. & Alberts, S. R., Jan 1 2019, (Accepted/In press) In : Oncologist.

Research output: Contribution to journalArticle

gemcitabine
Adenocarcinoma
Epidermal Growth Factor Receptor
Neoplasms
Survival

Apoplectic Silent Crooke Cell Adenoma with Adjacent Pseudoaneurysms: Causation or Bystander?

Krug, R. G., Chang, A. Y., Raghunathan, A. & Van Gompel, J., Feb 1 2019, In : World Neurosurgery. 122, p. 480-484 5 p.

Research output: Contribution to journalArticle

False Aneurysm
Causality
Adenoma
Internal Carotid Artery
Cavernous Sinus

Application of a 5 Marker Panel to the Routine Diagnosis of Peripheral T-Cell Lymphoma with T-Follicular Helper Phenotype

Basha, B. M., Bryant, S. C., Rech, K. L., Feldman, A. L., Vrana, J. A., Shi, M., Reed, K. A. & King, R., Jan 1 2019, In : American Journal of Surgical Pathology.

Research output: Contribution to journalArticle

Peripheral T-Cell Lymphoma
Phenotype

Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples

Vijayvargiya, P., Jeraldo, P. R., Thoendel, M. J., Greenwood-Quaintance, K. E., Garrigos, Z. E., Rizwan Sohail, M., Chia, N., Pritt, B. S. & Patel, R., Jan 1 2019, In : PloS one. 14, 10, e0222915.

Research output: Contribution to journalArticle

Open Access
Metagenomics
Mansonella
Firearms
Pathogens
Blood

Applying Time and Motion Methodology to Calculate Program Coordinator FTE

Bowler, C. & Pritt, B., Jun 1 2019, In : Journal of graduate medical education. 11, 3, p. 349-350 2 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

ARv7 Represses Tumor-Suppressor Genes in Castration-Resistant Prostate Cancer

Cato, L., de Tribolet-Hardy, J., Lee, I., Rottenberg, J. T., Coleman, I., Melchers, D., Houtman, R., Xiao, T., Li, W., Uo, T., Sun, S., Kuznik, N. C., Göppert, B., Ozgun, F., van Royen, M. E., Houtsmuller, A. B., Vadhi, R., Rao, P. K., Li, L., Balk, S. P. & 15 others, Den, R. B., Trock, B. J., Karnes, R. J., Jenkins, R. B., Klein, E. A., Davicioni, E., Gruhl, F. J., Long, H. W., Liu, X. S., Cato, A. C. B., Lack, N. A., Nelson, P. S., Plymate, S. R., Groner, A. C. & Brown, M., Mar 18 2019, In : Cancer cell. 35, 3, p. 401-413.e6

Research output: Contribution to journalArticle

Castration
Androgen Receptors
Tumor Suppressor Genes
Prostatic Neoplasms
Gene Expression Profiling
1 Citation (Scopus)

Ascorbic acid–induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma

Shenoy, N., Bhagat, T. D., Cheville, J., Lohse, C., Bhattacharyya, S., Tischer, A., Machha, V., Gordon-Mitchell, S., Choudhary, G., Wong, L. F., Gross, L. A., Ressigue, E., Leibovich, B., Boorjian, S. A., Steidl, U., Wu, X., Pradhan, K., Gartrell, B., Agarwal, B., Pagliaro, L. & 8 others, Suzuki, M., Greally, J. M., Rakheja, D., Houston Thompson, R., Susztak, K., Witzig, T. E., Zou, Y. & Verma, A., Apr 1 2019, In : Journal of Clinical Investigation. 129, 4, p. 1612-1625 14 p.

Research output: Contribution to journalArticle

Open Access
Renal Cell Carcinoma
Ascorbic Acid
Methylation
Cytosine
Protein Transport
1 Citation (Scopus)

Aspirin, NSAIDs, and glioma risk: Original data from the glioma international case-control study and a meta-analysis

Susan Amirian, E., Ostrom, Q. T., Armstrong, G. N., Lai, R. K., Gu, X., Jacobs, D. I., Jalali, A., Claus, E. B., Barnholtz-Sloan, J. S., Il'Yasova, D., Schildkraut, J. M., Ali-Osman, F., Sadetzki, S., Jenkins, R. B., Lachance, D. H., Olson, S. H., Bernstein, J. L., Merrell, R. T., Wrensch, M. R., Johansen, C. & 6 others, Houlston, R. S., Scheurer, M. E., Shete, S., Amos, C. I., Melin, B. & Bondy, M. L., Mar 1 2019, In : Cancer Epidemiology Biomarkers and Prevention. 28, 3, p. 555-562 8 p.

Research output: Contribution to journalArticle

Non-Steroidal Anti-Inflammatory Agents
Glioma
Aspirin
Meta-Analysis
Case-Control Studies
1 Citation (Scopus)

Association analyses identify 31 new risk loci for colorectal cancer susceptibility

the PRACTICAL consortium, Dec 1 2019, In : Nature communications. 10, 1, 2154.

Research output: Contribution to journalArticle

Open Access
loci
Colorectal Neoplasms
Genes
cancer
magnetic permeability
Odds Ratio
Mutation
Adenocarcinoma
Mucinous Adenocarcinoma
Adenocarcinoma of lung

Association of rs613872 and Trinucleotide Repeat Expansion in the TCF4 Gene of German Patients With Fuchs Endothelial Corneal Dystrophy

Okumura, N., Hayashi, R., Nakano, M., Tashiro, K., Yoshii, K., Aleff, R., Butz, M., Highsmith, W. E. J., Wieben, E. D., Fautsch, M. P., Baratz, K., Komori, Y., Ueda, E., Nakahara, M., Weller, J., Tourtas, T., Schlötzer-Schrehardt, U., Kruse, F. & Koizumi, N., Jul 1 2019, In : Cornea. 38, 7, p. 799-805 7 p.

Research output: Contribution to journalArticle

Fuchs' Endothelial Dystrophy
Trinucleotide Repeat Expansion
Trinucleotide Repeats
Transcription Factors
Single Nucleotide Polymorphism
1 Citation (Scopus)

Associations of catechol-O-methyltransferase (rs4680) single nucleotide polymorphisms with opioid use and dose among adults with chronic pain

Hooten, W. M., Biernacka, J. M., OʼBrien, T. G., Cunningham, J. M. & Black, J. L., Jan 1 2019, In : Pain. 160, 1, p. 263-268 6 p.

Research output: Contribution to journalArticle

Catechol O-Methyltransferase
Chronic Pain
Opioid Analgesics
Single Nucleotide Polymorphism
Genotype

A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease

Oliver, G. R., Tang, X., Schultz-Rogers, L. E., Vidal-Folch, N., Garrett Jenkinson, W., Schwab, T. L., Gaonkar, K., Cousin, M. A., Nair, A., Basu, S., Chanana, P., Oglesbee, D. & Klee, E. W., Jan 1 2019, In : PloS one. 14, 10, e0223337.

Research output: Contribution to journalArticle

Open Access
Rare Diseases
Fusion reactions
prioritization
germ cells
RNA Sequence Analysis

Atypical lipomatous tumour/well-differentiated liposarcoma and de-differentiated liposarcoma in patients aged ≤ 40 years: a study of 116 patients

Waters, R., Horvai, A., Greipp, P., John, I., Demicco, E. G., Dickson, B. C., Tanas, M. R., Larsen, B. T., Ud Din, N., Creytens, D. H., Bahrami, A., Doyle, L. A., Jo, V. Y., Al-Ibraheemi, A., Thway, K., Jenkins, S. M., Siontis, B., Folpe, A. & Fritchie, K., Jan 1 2019, (Accepted/In press) In : Histopathology.

Research output: Contribution to journalArticle

Liposarcoma
Neoplasms
Recurrence
Neck
Head

Aurora kinase B-phosphorylated HP1α functions in chromosomal instability

Williams, M. M., Mathison, A. J., Christensen, T., Greipp, P. T., Knutson, D. L., Klee, E. W., Zimmermann, M. T., Iovanna, J., Lomberk, G. A. & Urrutia, R. A., Jun 18 2019, In : Cell Cycle. 18, 12, p. 1407-1421 15 p.

Research output: Contribution to journalArticle

Open Access
Aurora Kinase B
Chromosomal Instability
Centromere
Mitosis
Serine

Autoimmune Epilepsy

Husari, K. S. & Dubey, D., Jul 15 2019, In : Neurotherapeutics. 16, 3, p. 685-702 18 p.

Research output: Contribution to journalArticle

Epilepsy
Brain Diseases
Autoantibodies
Glutamate Decarboxylase
Antibodies

Autoimmune gait disturbance accompanying adaptor protein-3B2-IgG

Honorat, J. A., Lopez-Chiriboga, A. S., Kryzer, T. J., Komorowski, L., Scharf, M., Hinson, S. R., Lennon, V. A., Pittock, S. J., Klein, C. J. & McKeon, A., Sep 3 2019, In : Neurology. 93, 10, p. e954-e963

Research output: Contribution to journalArticle

Open Access
Gait
Immunoglobulin G
Western Blotting
Cerebellar Ataxia
Proteins
5 Citations (Scopus)

Autoimmune glial fibrillary acidic protein astrocytopathy

Kunchok, A., Zekeridou, A. & McKeon, A. B., Jun 1 2019, In : Current opinion in neurology. 32, 3, p. 452-458 7 p.

Research output: Contribution to journalArticle

Glial Fibrillary Acidic Protein
Autoimmunity
Cerebrospinal Fluid
Central Nervous System
Central Nervous System Diseases

Bacterial Single Cell Whole Transcriptome Amplification in Microfluidic Platform Shows Putative Gene Expression Heterogeneity

Liu, Y., Jeraldo, P., Jang, J. S., Eckloff, B., Jen, J. & Walther-Antonio, M., Jan 1 2019, In : Analytical Chemistry.

Research output: Contribution to journalArticle

Microfluidics
Gene expression
Amplification
RNA
Gene expression regulation
10 Citations (Scopus)

Best Practices Recommendations for Diagnostic Immunohistochemistry in Lung Cancer

Yatabe, Y., Dacic, S., Borczuk, A. C., Warth, A., Russell, P. A., Lantuejoul, S., Beasley, M. B., Thunnissen, E., Pelosi, G., Rekhtman, N., Bubendorf, L., Mino-Kenudson, M., Yoshida, A., Geisinger, K. R., Noguchi, M., Chirieac, L. R., Bolting, J., Chung, J. H., Chou, T. Y., Chen, G. & 12 others, Poleri, C., Lopez-Rios, F., Papotti, M., Sholl, L. M., Roden, A., Travis, W. D., Hirsch, F. R., Kerr, K. M., Tsao, M. S., Nicholson, A. G., Wistuba, I. & Moreira, A. L., Mar 1 2019, In : Journal of Thoracic Oncology. 14, 3, p. 377-407 31 p.

Research output: Contribution to journalArticle

Open Access
Practice Guidelines
Lung Neoplasms
Immunohistochemistry
Pathology
Carcinoma

Bile duct involvement by hepatocellular carcinoma: A rare occurrence and poor prognostic indicator in bile duct brushing samples

Bhattarai, S., Graham, R. P., Sigel, C. S., Shi, J., Gonzalez, R. S., Xue, Y., Krasinskas, A. M., HooKim, K., Adsay, V. & Reid, M. D., Jan 1 2019, (Accepted/In press) In : Cancer Cytopathology.

Research output: Contribution to journalArticle

Bile Ducts
Hepatocellular Carcinoma
Biliary Tract
Liver
Pathologic Constriction

Biliary Amyloidoma as a Cause for Pancreatitis

Qin, Y., Smyrk, T. C. & Topazian, M., Jan 1 2019, In : Clinical Gastroenterology and Hepatology.

Research output: Contribution to journalArticle

Pancreatitis

Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples

Bhagwate, A. V., Liu, Y., Winham, S. J., McDonough, S. J., Stallings-Mann, M. L., Heinzen, E. P., Davila, J. I., Vierkant, R. A., Hoskin, T. L., Frost, M., Carter, J., Radisky, D. C., Cunningham, J. M., Degnim, A. C. & Wang, C., Sep 2 2019, In : BMC genomics. 20, 1, 689.

Research output: Contribution to journalArticle

Open Access
Computational Biology
Paraffin
Formaldehyde
Breast
DNA
3 Citations (Scopus)

Biology and prognostic impact of clonal plasmacytoid dendritic cells in chronic myelomonocytic leukemia

Lucas, N., Duchmann, M., Rameau, P., Noël, F., Michea, P., Saada, V., Kosmider, O., Pierron, G., Fernandez-Zapico, M. E., Howard, M. T., King, R., Niyongere, S., Diop, M. K., Fenaux, P., Itzykson, R., Willekens, C., Ribrag, V., Fontenay, M., Padron, E., Soumelis, V. & 3 others, Droin, N., Patnaik, M. M. & Solary, E., Jan 1 2019, In : Leukemia.

Research output: Contribution to journalArticle

Leukemia, Myelomonocytic, Chronic
Dendritic Cells
Bone Marrow
Protein-Tyrosine Kinases
Flow Cytometry