Laboratory Medicine and Pathology

Research output

Research output per year 1976 2001 2003 2008 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 1443 Article
• 125 Review article
• 60 Letter
• 31 Comment/debate
• 54 More
  • 29 Chapter
  • 19 Editorial
  • 5 Short survey
  • 1 Conference contribution

Research output per year

Research output per year

Search results

• 2024

  Allometric versus traditional body-shape indices and risk of colorectal cancer: a Mendelian randomization analysis

  Rontogianni, M. O., Bouras, E., Aglago, E. K., Freisling, H., Murphy, N., Cotterchio, M., Hampe, J., Lindblom, A., Pai, R. K., Pharoah, P. D. P., Phipps, A. I., van Duijnhoven, F. J. B., Visvanathan, K., van Guelpen, B., Li, C. I., Brenner, H., Pellatt, A. J., Ogino, S., Gunter, M. J., Peters, U., & 2 othersChristakoudi, S. & Tsilidis, K. K., 2024, (Accepted/In press) In: International Journal of Obesity.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Alport syndrome: A puzzling case of thrombocytopenia and giant unusual platelets in blood smear

  Ocal, J., Sola-Visner, M. & Rimsza, L., 2024, (Accepted/In press) In: American journal of hematology.

  Research output: Contribution to journal › Article › peer-review

• An End-to-End Platform for Digital Pathology Using Hyperspectral Autofluorescence Microscopy and Deep Learning-Based Virtual Histology

  McNeil, C., Wong, P. F., Sridhar, N., Wang, Y., Santori, C., Wu, C. H., Homyk, A., Gutierrez, M., Behrooz, A., Tiniakos, D., Burt, A. D., Pai, R. K., Tekiela, K., Patel, H., Cameron Chen, P. H., Fischer, L., Martins, E. B., Seyedkazemi, S., Freedman, D., Kim, C. C., & 1 othersCimermancic, P., Feb 2024, In: Modern Pathology. 37, 2, 100377.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Causal relationships between risk of venous thromboembolism and 18 cancers: a bidirectional Mendelian randomization analysis

  InterLymph Consortium & INVENT-MVP Consortium, Feb 1 2024, In: International journal of epidemiology. 53, 1, dyad170.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Venous Thromboembolism 67%
  • Neoplasms 20%
  • Pancreatic Neoplasms 13%
  • Odds Ratio 8%
  • Blood Group Antigens 7%

• Circulating white blood cell traits and colorectal cancer risk: A Mendelian randomisation study

  Constantinescu, A. E., Bull, C. J., Jones, N., Mitchell, R., Burrows, K., Dimou, N., Bézieau, S., Brenner, H., Buchanan, D. D., D'Amato, M., Jenkins, M. A., Moreno, V., Pai, R. K., Um, C. Y., White, E., Murphy, N., Gunter, M., Timpson, N. J., Huyghe, J. R. & Vincent, E. E., Jan 1 2024, In: International Journal of Cancer. 154, 1, p. 94-103 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Random Allocation 100%
  • Eosinophils 98%
  • Colorectal Neoplasms 81%
  • Leukocytes 80%
  • Basophils 40%

• Clinical Data Do Not Reliably Predict Duodenal Histology at Follow-up in Celiac Disease: A 13 Center Correlative Study

  Patel, N., Leffler, D. A., Al-Toma, A., Mulder, C. J., Elli, L., Gan, G., Patil, P., Atsawarungruangkit, A., Kuijpers, K. C., Del Gobbo, A., Goldsmith, J., Hintze, Z., Pacheco, M. C., Vieth, M., Melcher, B., Salomao, M., Pai, R., Hart, J., Olivas, A., Naini, B., & 10 othersMeyerson, C., Choi, W. T., Kakar, S., Westerhoff, M., Cheng, J., Gopal, P., Hammer, S., Moreno Prats, M., Bronner, M. P. & Robert, M. E., Feb 1 2024, In: American Journal of Surgical Pathology. 48, 2, p. 212-220 9 p.

  Research output: Contribution to journal › Article › peer-review

• Effects of Mirikizumab on Histologic Resolution of Crohn's Disease in a Randomized Controlled Phase 2 Trial

  Magro, F., Protic, M., De Hertogh, G., Chan, L. S., Pollack, P., Jairath, V., Carlier, H., Hon, E., Feagan, B. G., Harpaz, N., Pai, R. & Reinisch, W., 2024, (Accepted/In press) In: Clinical Gastroenterology and Hepatology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Epithelial overexpression of IL-33 induces eosinophilic esophagitis dependent on IL-13

  Masuda, M. Y., Pyon, G. C., Luo, H., LeSuer, W. E., Putikova, A., Dao, A., Ortiz, D. R., Schulze, A. R., Fritz, N., Kobayashi, T., Iijima, K., Klein-Szanto, A. J., Shimonosono, M., Flashner, S., Morimoto, M., Pai, R. K., Rank, M. A., Nakagawa, H., Kita, H., Wright, B. L., & 1 othersDoyle, A. D., 2024, (Accepted/In press) In: Journal of Allergy and Clinical Immunology.

  Research output: Contribution to journal › Article › peer-review

  • Eosinophilic Esophagitis 100%
  • Interleukin-33 96%
  • Interleukin-13 80%
  • Organoids 26%
  • Epithelium 23%

• Evaluation of clinical parameters and biomarkers in older, untreated mantle cell lymphoma patients receiving bendamustine–rituximab

  Ramsower, C. A., Rosenthal, A., Robetorye, R. S., Mwangi, R., Maurer, M., Villa, D., McDonnell, T., Feldman, A., Cohen, JB., Habermann, T., Campo, E., Clot, G., Bühler, MM., Kulis, M., Martin-Subero, J. I., Giné, E., Cook, J. R., Hill, B., Raess, P. W., Beiske, K. H., & 5 othersReichart, A., Hartmann, S., Holte, H., Scott, D. & Rimsza, L., Jan 2024, In: British journal of haematology. 204, 1, p. 160-170 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Mantle-Cell Lymphoma 100%
  • Biomarkers 49%
  • Bendamustine Hydrochloride 16%
  • Rituximab 11%
  • Cell Biology 9%

• Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments

  Krull, J. E., Wenzl, K., Hopper, M. A., Manske, M. K., Sarangi, V., Maurer, M. J., Larson, M. C., Mondello, P., Yang, Z. Z., Novak, J. P., Serres, M., Whitaker, K. R., Villasboas Bisneto, J. C., Habermann, T. M., Witzig, T. E., Link, B. K., Rimsza, L. M., King, R. L., Ansell, S. M., Cerhan, J. R., & 1 othersNovak, A. J., Mar 19 2024, In: Cell Reports Medicine. 5, 3, 101443.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Histologic assessments in ulcerative colitis: the evidence behind a new endpoint in clinical trials

  Pai, R. K., D’Haens, G., Kobayashi, T., Sands, B. E., Travis, S., Jairath, V., De Hertogh, G., Park, B., McGinnis, K., Redondo, I., Lipitz, N. G., Gibble, T. H. & Magro, F., 2024, In: Expert Review of Gastroenterology and Hepatology. 18, 1-3, p. 73-87 15 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Identification of immune cell markers associated with ulcerative colitis histological disease activity in colonic biopsies

  Lefevre, P. L. C., Wang, Z., Teft, W., Zou, G., Van Viegen, T., Linggi, B., Jairath, V., Feagan, B. G., Pai, R. K. & Vande Casteele, N., 2024, (Accepted/In press) In: Journal of clinical pathology. jcp-2023-209327.

  Research output: Contribution to journal › Article › peer-review

• Mast cell cytomorphology and treatment outcome in mast cell leukemia

  Tefferi, A., Pardanani, A., Al-Kali, A., Alkhateeb, H., McCullough, K., Patnaik, M., Hogan, W. J., Begna, K., Elliott, M. A., Khera, N., Palmer, J. M., Gangat, N., Kelemen, K., Orazi, A., Chen, D. & Reichard, K. K., Jan 2024, In: American journal of hematology. 99, 1, p. E5-E8

  Research output: Contribution to journal › Letter › peer-review

  Open Access

• Navigating between Scylla and Charybdis: A roadmap to do better than Pola-RCHP in DLBCL

  Munoz, J., Deshpande, A., Rimsza, L., Nowakowski, G. S. & Kurzrock, R., Mar 2024, In: Cancer Treatment Reviews. 124, 102691.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Lymphoma, Large B-Cell, Diffuse 100%
  • polatuzumab vedotin 28%
  • Cell- and Tissue-Based Therapy 28%
  • R-CHOP protocol 25%
  • Pharmaceutical Technology 23%

• Observational and genetic associations between cardiorespiratory fitness and cancer: a UK Biobank and international consortia study

  Watts, E. L., Gonzales, T. I., Strain, T., Saint-Maurice, P. F., Bishop, D. T., Chanock, S. J., Johansson, M., Keku, T. O., Le Marchand, L., Moreno, V., Newcomb, P. A., Newton, C. C., Pai, R. K., Purdue, M. P., Ulrich, C. M., Smith-Byrne, K., Van Guelpen, B., Eeles, R. A., Haiman, C. A., Kote-Jarai, Z., & 74 othersSchumacher, F. R., Benlloch, S., Olama, A. A. A., Muir, K. R., Berndt, S. I., Conti, D. V., Wiklund, F., Chanock, S. J., Wang, Y., Tangen, C. M., Batra, J., Clements, J. A., Grönberg, H., Pashayan, N., Schleutker, J., Albanes, D., Weinstein, S. J., Wolk, A., West, C. M. L., Mucci, L. A., Cancel-Tassin, G., Koutros, S., Sørensen, K. D., Grindedal, E. M., Neal, D. E., Hamdy, F. C., Donovan, J. L., Travis, R. C., Hamilton, R. J., Ingles, S. A., Rosenstein, B. S., Lu, Y. J., Giles, G. G., MacInnis, R. J., Kibel, A. S., Vega, A., Kogevinas, M., Penney, K. L., Park, J. Y., Stanford, J. L., Cybulski, C., Nordestgaard, B. G., Nielsen, S. F., Brenner, H., Maier, C., Kim, J., John, E. M., Teixeira, M. R., Neuhausen, S. L., De Ruyck, K., Razack, A., Newcomb, L. F., Lessel, D., Kaneva, R., Usmani, N., Claessens, F., Townsend, P. A., Castelao, J. E., Roobol, M. J., Menegaux, F., Khaw, K. T., Cannon-Albright, L., Pandha, H., Thibodeau, S. N., Hunter, D. J., Kraft, P., Blot, W. J., Riboli, E., Day, F. R., Wijndaele, K., Wareham, N. J., Matthews, C. E., Moore, S. C. & Brage, S., Jan 31 2024, In: British journal of cancer. 130, 1, p. 114-124 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• On Complete Clinical Response of Basal Cell Carcinoma of the Prostate After Definitive Concurrent Chemoradiation

  Toesca, D. A. S., Cheney, S. M., Singh, P., Stanton, M. L. & Wong, W. W., Apr 2024, In: Advances in Radiation Oncology. 9, 4, 101427.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Reappraisal of mast cell leukemia based on a single institution review of 16 cases: Mast cell morphology determines clinical outcome

  Pardanani, A., Tefferi, A., Al-Kali, A., Patnaik, M., Hogan, W. J., Begna, K., Elliott, M. A., Khera, N., Palmer, J. M., Gangat, N., Orazi, A., Kelemen, K., Reichard, K. K. & Chen, D., Jan 2024, In: American journal of hematology. 99, 1, p. E1-E4

  Research output: Contribution to journal › Letter › peer-review

  Open Access

• Reliability and Responsiveness of Histologic Indices for the Assessment of Crohn's Disease Activity

  Solitano, V., Schaeffer, D. F., Hogan, M., Vande Casteele, N., Pai, R. K., Zou, G., Pai, R. K., Parker, C. E., Rémillard, J., Christensen, B., Danese, S., Peyrin-Biroulet, L., Panaccione, R., Sands, B. E., D'Haens, G., Feagan, B. G., Ma, C. & Jairath, V., 2024, (Accepted/In press) In: Clinical Gastroenterology and Hepatology.

  Research output: Contribution to journal › Article › peer-review

• Standardizing Randomized Controlled Trials in Celiac Disease: An International Multidisciplinary Appropriateness Study

  Lebwohl, B., Ma, C., Lagana, S. M., Pai, R. K., Baker, K. A., Zayadi, A., Hogan, M., Bouma, G., Cellier, C., Goldsmith, J. D., Lundin, K. E. A., Pinto-Sanchez, M. I., Robert, M. E., Rubio-Tapia, A., Sanders, D. S., Schaeffer, D. F., Semrad, C. E., Silvester, J. A., Verdú, E. F., Verma, R., & 5 othersWu, T. T., Feagan, B. G., Crowley, E., Jairath, V. & Murray, J. A., Jan 2024, In: Gastroenterology. 166, 1, p. 88-102 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Glutens 100%
  • Celiac Disease 87%
  • Randomized Controlled Trials 53%
  • Gluten-Free Diet 40%
  • Patient Reported Outcome Measures 34%
• 2023

  A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk

  Aglago, E. K., Kim, A., Lin, Y., Qu, C., Evangelou, M., Ren, Y., Morrison, J., Albanes, D., Arndt, V., Barry, E. L., Baurley, J. W., Berndt, S. I., Bien, S. A., Bishop, D. T., Bouras, E., Brenner, H., Buchanan, D. D., Budiarto, A., Carreras-Torres, R., Casey, G., & 85 othersCenggoro, T. W., Chan, A. T., Chang-Claude, J., Chen, X., Conti, D. V., Devall, M., Diez-Obrero, V., Dimou, N., Drew, D., Figueiredo, J. C., Gallinger, S., Giles, G. G., Gruber, S. B., Gsur, A., Gunter, M. J., Hampel, H., Harlid, S., Hidaka, A., Harrison, T. A., Hoffmeister, M., Huyghe, J. R., Jenkins, M. A., Jordahl, K., Joshi, A. D., Kawaguchi, E. S., Keku, T. O., Kundaje, A., Larsson, S. C., Le Marchand, L., Lewinger, J. P., Li, L., Lynch, B. M., Mahesworo, B., Mandic, M., Obón-Santacana, M., Moreno, V., Murphy, N., Nan, H., Nassir, R., Newcomb, P. A., Ogino, S., Ose, J., Pai, R. K., Palmer, J. R., Papadimitriou, N., Pardamean, B., Peoples, A. R., Platz, E. A., Potter, J. D., Prentice, R. L., Rennert, G., Ruiz-Narvaez, E., Sakoda, L. C., Scacheri, P. C., Schmit, S. L., Schoen, R. E., Shcherbina, A., Slattery, M. L., Stern, M. C., Su, Y. R., Tangen, C. M., Thibodeau, S. N., Thomas, D. C., Tian, Y., Ulrich, C. M., van Duijnhoven, F. J. B., Van Guelpen, B., Visvanathan, K., Vodicka, P., Wang, J., White, E., Wolk, A., Woods, M. O., Wu, A. H., Zemlianskaia, N., Hsu, L., Gauderman, W. J., Peters, U., Tsilidis, K. K., Campbell, P. T., Hsu, L., Gauderman, W. J., Peters, U., Tsilidis, K. K. & Campbell, P. T., Aug 1 2023, In: Cancer research. 83, 15, p. 2572-2583 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Genetic Loci 100%
  • Colorectal Neoplasms 65%
  • Body Mass Index 58%
  • Genes 32%
  • Obesity 25%

• A Highly Sensitive Pan-Cancer Test for Microsatellite Instability

  Bacher, J. W., Udho, E. B., Strauss, E. E., Vyazunova, I., Gallinger, S., Buchanan, D. D., Pai, R. K., Templeton, A. S., Storts, D. R., Eshleman, J. R. & Halberg, R. B., Nov 2023, In: Journal of Molecular Diagnostics. 25, 11, p. 806-826 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Microsatellite Instability 100%
  • Promega 29%
  • Neoplasms 26%
  • Hereditary Nonpolyposis Colorectal Neoplasms 23%
  • Colorectal Neoplasms 21%

• A Journey Toward Gender Equity in Medicine

  Porter, A. B., Noe, K. H., Tazelaar, H. D., Saliba, K. L., Kary, T. K., Pockaj, B. A., Menkosky, P. E., Gray, R. J. & Rebecca, A. M., May 2023, In: Mayo Clinic proceedings. 98, 5, p. 657-661 5 p.

  Research output: Contribution to journal › Short survey › peer-review

  Open Access

• Allogeneic hematopoietic stem cell transplantation in adults with dendritic/histiocytic neoplasms

  Gaulin, C., Craig, F., Fortin Ensign, S., Robetorye, R., Gibson, S., Kelemen, K., Khera, N., Leis, J., Tsang, M., Rosenthal, A., Munoz, J., Palmer, J. & Hilal, T., 2023, In: Leukemia and Lymphoma. 64, 14, p. 2347-2350 4 p.

  Research output: Contribution to journal › Letter › peer-review

• Angiolipoma: a review of 778 lesions in 344 patients

  Kransdorf, M. J., Larsen, B. T., Goulding, K. A., Cumsky, J. L., Hwang, S. & Long, J. R., Mar 2023, In: Skeletal Radiology. 52, 3, p. 541-552 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Angiolipoma 100%
  • Fats 22%
  • Subcutaneous Tissue 16%
  • Upper Extremity 13%
  • Ultrasonography 11%

• A TRIP11:: FLT3 gene fusion in a patient with myeloid/lymphoid neoplasm with eosinophilia and tyrosine kinase gene fusions: a case report and review of the literature

  Venable, E. R., Gagnon, M. F., Pitel, B. A., Palmer, J. M., Peterson, J. F., Baughn, L. B., Hoppman, N. L., Greipp, P. T., Ketterling, R. P., Patnaik, M. S., Kelemen, K. & Xu, X., Feb 2023, In: Cold Spring Harbor Molecular Case Studies. 9, 1, a006243.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tyrosine Kinase Inhibitor 100%
  • Gene Fusion 81%
  • Eosinophilia 78%
  • Tyrosine 65%
  • Protein-Tyrosine Kinases 65%

• Author Correction: Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries (Nature Genetics, (2023), 55, 1, (89-99), 10.1038/s41588-022-01222-9)

  Fernandez-Rozadilla, C., Timofeeva, M., Chen, Z., Law, P., Thomas, M., Schmit, S., Díez-Obrero, V., Hsu, L., Fernandez-Tajes, J., Palles, C., Sherwood, K., Briggs, S., Svinti, V., Donnelly, K., Farrington, S., Blackmur, J., Vaughan-Shaw, P., Shu, X. O., Long, J., Cai, Q., & 190 othersGuo, X., Lu, Y., Broderick, P., Studd, J., Huyghe, J., Harrison, T., Conti, D., Dampier, C., Devall, M., Schumacher, F., Melas, M., Rennert, G., Obón-Santacana, M., Martín-Sánchez, V., Moratalla-Navarro, F., Oh, J. H., Kim, J., Jee, S. H., Jung, K. J., Kweon, S. S., Shin, M. H., Shin, A., Ahn, Y. O., Kim, D. H., Oze, I., Wen, W., Matsuo, K., Matsuda, K., Tanikawa, C., Ren, Z., Gao, Y. T., Jia, W. H., Hopper, J., Jenkins, M., Win, A. K., Pai, R., Figueiredo, J., Haile, R., Gallinger, S., Woods, M., Newcomb, P., Duggan, D., Cheadle, J., Kaplan, R., Maughan, T., Kerr, R., Kerr, D., Kirac, I., Böhm, J., Mecklin, L. P., Jousilahti, P., Knekt, P., Aaltonen, L., Rissanen, H., Pukkala, E., Eriksson, J., Cajuso, T., Hänninen, U., Kondelin, J., Palin, K., Tanskanen, T., Renkonen-Sinisalo, L., Zanke, B., Männistö, S., Albanes, D., Weinstein, S., Ruiz-Narvaez, E., Palmer, J., Buchanan, D., Platz, E., Visvanathan, K., Ulrich, C., Siegel, E., Brezina, S., Gsur, A., Campbell, P., Chang-Claude, J., Hoffmeister, M., Brenner, H., Slattery, M., Potter, J., Tsilidis, K., Schulze, M., Gunter, M., Murphy, N., Castells, A., Castellví-Bel, S., Moreira, L., Arndt, V., Shcherbina, A., Stern, M., Pardamean, B., Bishop, T., Giles, G., Southey, M., Idos, G., McDonnell, K., Abu-Ful, Z., Greenson, J., Shulman, K., Lejbkowicz, F., Offit, K., Su, Y. R., Steinfelder, R., Keku, T., van Guelpen, B., Hudson, T., Hampel, H., Pearlman, R., Berndt, S., Hayes, R., Martinez, M. E., Thomas, S., Corley, D., Pharoah, P., Larsson, S., Yen, Y., Lenz, H. J., White, E., Li, L., Doheny, K., Pugh, E., Shelford, T., Chan, A., Cruz-Correa, M., Lindblom, A., Hunter, D., Joshi, A., Schafmayer, C., Scacheri, P., Kundaje, A., Nickerson, D., Schoen, R., Hampe, J., Stadler, Z., Vodicka, P., Vodickova, L., Vymetalkova, V., Papadopoulos, N., Edlund, C., Gauderman, W., Thomas, D., Shibata, D., Toland, A., Markowitz, S., Kim, A., Chanock, S., van Duijnhoven, F., Feskens, E., Sakoda, L., Gago-Dominguez, M., Wolk, A., Naccarati, A., Pardini, B., FitzGerald, L., Lee, S. C., Ogino, S., Bien, S., Kooperberg, C., Li, C., Lin, Y., Prentice, R., Qu, C., Bézieau, S., Tangen, C., Mardis, E., Yamaji, T., Sawada, N., Iwasaki, M., Haiman, C., Le Marchand, L., Wu, A., Qu, C., McNeil, C., Coetzee, G., Hayward, C., Deary, I., Harris, S., Theodoratou, E., Reid, S., Walker, M., Ooi, L. Y., Moreno, V., Casey, G., Gruber, S., Tomlinson, I., Zheng, W., Dunlop, M., Houlston, R. & Peters, U., Mar 2023, In: Nature Genetics. 55, 3, p. 519-520 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Genome-Wide Association Study 100%
  • Colorectal Neoplasms 76%
  • Reading 41%
  • Single Nucleotide Polymorphism 40%
  • Genes 38%

• Beyond Neutrophils for Predicting Relapse and Remission in Ulcerative Colitis

  El-Zimaity, H., Shaffer, S. R., Riddell, R. H., Pai, R. K. & Bernstein, C. N., May 1 2023, In: Journal of Crohn's and Colitis. 17, 5, p. 767-776 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Neutrophils 79%
  • Eosinophils 70%
  • Recurrence 58%
  • Colon 46%
  • Mucous Membrane 46%

• Burkholderia pseudomallei Laboratory Exposure, Arizona, USA

  Speiser, L. J., Graf, E. H., Seville, M. T., Singbartl, K., Dalton, M. L., Harrington, D., Kretschmer, M., Kuljanin, M., Zabel, K., Sunenshine, R., Ruberto, I., Venkat, H. & Grys, T. E., May 2023, In: Emerging infectious diseases. 29, 5, p. 1061-1063 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Combining Asian and European genome-wide association studies of colorectal cancer improves risk prediction across racial and ethnic populations

  Thomas, M., Su, Y. R., Rosenthal, E. A., Sakoda, L. C., Schmit, S. L., Timofeeva, M. N., Chen, Z., Fernandez-Rozadilla, C., Law, P. J., Murphy, N., Carreras-Torres, R., Diez-Obrero, V., van Duijnhoven, F. J. B., Jiang, S., Shin, A., Wolk, A., Phipps, A. I., Burnett-Hartman, A., Gsur, A., Chan, A. T., & 109 othersZauber, A. G., Wu, A. H., Lindblom, A., Um, C. Y., Tangen, C. M., Gignoux, C., Newton, C., Haiman, C. A., Qu, C., Bishop, D. T., Buchanan, D. D., Crosslin, D. R., Conti, D. V., Kim, D. H., Hauser, E., White, E., Siegel, E., Schumacher, F. R., Rennert, G., Giles, G. G., Hampel, H., Brenner, H., Oze, I., Oh, J. H., Lee, J. K., Schneider, J. L., Chang-Claude, J., Kim, J., Huyghe, J. R., Zheng, J., Hampe, J., Greenson, J., Hopper, J. L., Palmer, J. R., Visvanathan, K., Matsuo, K., Matsuda, K., Jung, K. J., Li, L., Le Marchand, L., Vodickova, L., Bujanda, L., Gunter, M. J., Matejcic, M., Jenkins, M. A., Slattery, M. L., D’Amato, M., Wang, M., Hoffmeister, M., Woods, M. O., Kim, M., Song, M., Iwasaki, M., Du, M., Udaltsova, N., Sawada, N., Vodicka, P., Campbell, P. T., Newcomb, P. A., Cai, Q., Pearlman, R., Pai, R. K., Schoen, R. E., Steinfelder, R. S., Haile, R. W., Vandenputtelaar, R., Prentice, R. L., Küry, S., Castellví-Bel, S., Tsugane, S., Berndt, S. I., Lee, S. C., Brezina, S., Weinstein, S. J., Chanock, S. J., Jee, S. H., Kweon, S. S., Vadaparampil, S., Harrison, T. A., Yamaji, T., Keku, T. O., Vymetalkova, V., Arndt, V., Jia, W. H., Shu, X. O., Lin, Y., Ahn, Y. O., Stadler, Z. K., Van Guelpen, B., Ulrich, C. M., Platz, E. A., Potter, J. D., Li, C. I., Meester, R., Moreno, V., Figueiredo, J. C., Casey, G., Lansdorp Vogelaar, I., Dunlop, M. G., Gruber, S. B., Hayes, R. B., Pharoah, P. D. P., Houlston, R. S., Jarvik, G. P., Tomlinson, I. P., Zheng, W., Corley, D. A., Peters, U. & Hsu, L., Dec 2023, In: Nature communications. 14, 1, 6147.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • genome 100%
  • Genome-Wide Association Study 80%
  • cancer 71%
  • Black 67%
  • Colorectal Neoplasms 61%

• Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries

  Fernandez-Rozadilla, C., Timofeeva, M., Chen, Z., Law, P., Thomas, M., Schmit, S., Díez-Obrero, V., Hsu, L., Fernandez-Tajes, J., Palles, C., Sherwood, K., Briggs, S., Svinti, V., Donnelly, K., Farrington, S., Blackmur, J., Vaughan-Shaw, P., Shu, X. O., Long, J., Cai, Q., & 190 othersGuo, X., Lu, Y., Broderick, P., Studd, J., Huyghe, J., Harrison, T., Conti, D., Dampier, C., Devall, M., Schumacher, F., Melas, M., Rennert, G., Obón-Santacana, M., Martín-Sánchez, V., Moratalla-Navarro, F., Oh, J. H., Kim, J., Jee, S. H., Jung, K. J., Kweon, S. S., Shin, M. H., Shin, A., Ahn, Y. O., Kim, D. H., Oze, I., Wen, W., Matsuo, K., Matsuda, K., Tanikawa, C., Ren, Z., Gao, Y. T., Jia, W. H., Hopper, J., Jenkins, M., Win, A. K., Pai, R., Figueiredo, J., Haile, R., Gallinger, S., Woods, M., Newcomb, P., Duggan, D., Cheadle, J., Kaplan, R., Maughan, T., Kerr, R., Kerr, D., Kirac, I., Böhm, J., Mecklin, L. P., Jousilahti, P., Knekt, P., Aaltonen, L., Rissanen, H., Pukkala, E., Eriksson, J., Cajuso, T., Hänninen, U., Kondelin, J., Palin, K., Tanskanen, T., Renkonen-Sinisalo, L., Zanke, B., Männistö, S., Albanes, D., Weinstein, S., Ruiz-Narvaez, E., Palmer, J., Buchanan, D., Platz, E., Visvanathan, K., Ulrich, C., Siegel, E., Brezina, S., Gsur, A., Campbell, P., Chang-Claude, J., Hoffmeister, M., Brenner, H., Slattery, M., Potter, J., Tsilidis, K., Schulze, M., Gunter, M., Murphy, N., Castells, A., Castellví-Bel, S., Moreira, L., Arndt, V., Shcherbina, A., Stern, M., Pardamean, B., Bishop, T., Giles, G., Southey, M., Idos, G., McDonnell, K., Abu-Ful, Z., Greenson, J., Shulman, K., Lejbkowicz, F., Offit, K., Su, Y. R., Steinfelder, R., Keku, T., van Guelpen, B., Hudson, T., Hampel, H., Pearlman, R., Berndt, S., Hayes, R., Martinez, M. E., Thomas, S., Corley, D., Pharoah, P., Larsson, S., Yen, Y., Lenz, H. J., White, E., Li, L., Doheny, K., Pugh, E., Shelford, T., Chan, A., Cruz-Correa, M., Lindblom, A., Hunter, D., Joshi, A., Schafmayer, C., Scacheri, P., Kundaje, A., Nickerson, D., Schoen, R., Hampe, J., Stadler, Z., Vodicka, P., Vodickova, L., Vymetalkova, V., Papadopoulos, N., Edlund, C., Gauderman, W., Thomas, D., Shibata, D., Toland, A., Markowitz, S., Kim, A., Chanock, S., van Duijnhoven, F., Feskens, E., Sakoda, L., Gago-Dominguez, M., Wolk, A., Naccarati, A., Pardini, B., FitzGerald, L., Lee, S. C., Ogino, S., Bien, S., Kooperberg, C., Li, C., Lin, Y., Prentice, R., Qu, C., Bézieau, S., Tangen, C., Mardis, E., Yamaji, T., Sawada, N., Iwasaki, M., Haiman, C., Le Marchand, L., Wu, A., Qu, C., McNeil, C., Coetzee, G., Hayward, C., Deary, I., Harris, S., Theodoratou, E., Reid, S., Walker, M., Ooi, L. Y., Moreno, V., Casey, G., Gruber, S., Tomlinson, I., Zheng, W., Dunlop, M., Houlston, R. & Peters, U., Jan 2023, In: Nature Genetics. 55, 1, p. 89-99 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Colorectal Neoplasms 100%
  • Mucous Membrane 33%
  • Microbial Interactions 32%
  • Epigenome 26%
  • Chemoprevention 23%

• Deep Learning and Colon Cancer Interpretation: Rise of the Machine

  McHugh, K. & Pai, R. K., Dec 2023, In: Surgical Pathology Clinics. 16, 4, p. 651-658 8 p.

  Research output: Contribution to journal › Review article › peer-review

• Development of a rapid lateral flowassay for detection of anti-coccidioidal antibodies

  Grill, F. J., Svarovsky, S., Gonzalez-Moa, M., Kaleta, E., Blair, J. E., Lovato, L., Grant, R., Ross, K., Linnehan, B. K., Meegan, J., Reilly, K. S., Brown, A., Williams, S., Chung, Y., Magee, D. M., Grys, T. E. & Lake, D. F., Sep 2023, In: Journal of clinical microbiology. 61, 9

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chitinases 100%
  • Anti-Idiotypic Antibodies 58%
  • Coccidioidomycosis 50%
  • Immunodiffusion 42%
  • Antibodies 25%

• Diagnosing myocarditis in endomyocardial biopsies: survey of current practice

  De Gaspari, M., Larsen, B. T., d'Amati, G., Kreutz, K., Basso, C., Michaud, K., Halushka, M. K. & Lin, C. Y., May 1 2023, In: Cardiovascular Pathology. 64, 107494.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Myocarditis 100%
  • Pathologists 87%
  • Cardiology 75%
  • Biopsy 53%
  • Immunohistochemistry 17%

• DNA methylation profile in CpG-depleted regions uncovers a high-risk subtype of early-stage colorectal cancer

  Yu, H., Wang, X., Bai, L., Tang, G., Carter, K. T., Cui, J., Huang, P., Liang, L., Ding, Y., Cai, M., Huang, M., Liu, H., Cao, G., Gallinger, S., Pai, R. K., Buchanan, D. D., Win, A. K., Newcomb, P. A., Wang, J., Grady, W. M., & 1 othersLuo, Y., Jan 1 2023, In: Journal of the National Cancer Institute. 115, 1, p. 52-61 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • DNA Methylation 100%
  • Methylation 91%
  • Colorectal Neoplasms 80%
  • Recurrence 46%
  • Epigenomics 35%

• DNA Mismatch Repair Gene Variant Classification: Evaluating the Utility of Somatic Mutations and Mismatch Repair Deficient Colonic Crypts and Endometrial Glands

  on behalf of ANGELS Study, Oct 2023, In: Cancers. 15, 20, 4925.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Hereditary Nonpolyposis Colorectal Neoplasms 66%
  • Mutation 47%
  • Genes 33%
  • Neoplasms 27%
  • Turcot syndrome 24%

• Elucidating the Risk of Colorectal Cancer for Variants in Hereditary Colorectal Cancer Genes

  Gecco-Ccfr Consortium, Oct 2023, In: Gastroenterology. 165, 4, p. 1070-1076.e3

  Research output: Contribution to journal › Short survey › peer-review

  Open Access

• Extensive intratumor regional epigenetic heterogeneity in clear cell renal cell carcinoma targets kidney enhancers and is associated with poor outcome

  El Khoury, L. Y., Pan, X., Hlady, R. A., Wagner, R. T., Shaikh, S., Wang, L., Humphreys, M. R., Castle, E. P., Stanton, M. L., Ho, T. H. & Robertson, K. D., Dec 2023, In: Clinical Epigenetics. 15, 1, 71.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Renal Cell Carcinoma 100%
  • Epigenomics 90%
  • Kidney 55%
  • Neoplasms 33%
  • Entropy 27%

• Genetically proxied glucose-lowering drug target perturbation and risk of cancer: a Mendelian randomisation analysis

  The PRACTICAL Consortium, VA Million Veteran Program & APCB BioResource (Australian Prostate Cancer BioResource), Aug 2023, In: Diabetologia. 66, 8, p. 1481-1500 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Glucose 39%
  • Prostatic Neoplasms 27%
  • Glucagon-Like Peptide-1 Receptor 26%
  • Pharmaceutical Preparations 25%
  • Neoplasms 20%

• Genome-wide Interaction Study with Smoking for Colorectal Cancer Risk Identifies Novel Genetic Loci Related to Tumor Suppression, Inflammation, and Immune Response

  Carreras-Torres, R., Kim, A. E., Lin, Y., Díez-Obrero, V., Bien, S. A., Qu, C., Wang, J., Dimou, N., Aglago, E. K., Albanes, D., Arndt, V., Baurley, J. W., Berndt, S. I., Bezieau, S., Bishop, D. T., Bouras, E., Brenner, H., Budiarto, A., Campbell, P. T., Casey, G., & 69 othersChan, A. T., Chang-Claude, J., Chen, X., Conti, D. V., Dampier, C. H., Devall, M. A. M., Drew, D. A., Figueiredo, J. C., Gallinger, S., Giles, G. G., Gruber, S. B., Gsur, A., Gunter, M. J., Harrison, T. A., Hidaka, A., Hoffmeister, M., Huyghe, J. R., Jenkins, M. A., Jordahl, K. M., Kawaguchi, E., Keku, T. O., Kundaje, A., Le Marchand, L., Lewinger, J. P., Li, L., Mahesworo, B., Morrison, J. L., Murphy, N., Nan, H., Nassir, R., Newcomb, P. A., Obon-Santacana, M., Ogino, S., Ose, J., Pai, R. K., Palmer, J. R., Papadimitriou, N., Pardamean, B., Peoples, A. R., Pharoah, P. D. P., Platz, E. A., Rennert, G., Ruiz-Narvaez, E., Sakoda, L. C., Scacheri, P. C., Schmit, S. L., Schoen, R. E., Shcherbina, A., Slattery, M. L., Stern, M. C., Su, Y. R., Tangen, C. M., Thomas, D. C., Tian, Y., Tsilidis, K. K., Ulrich, C. M., van Duijnhoven, F. J. B., Van Guelpen, B., Visvanathan, K., Vodicka, P., Cenggoro, T. W., Weinstein, S. J., White, E., Wolk, A., Woods, M. O., Hsu, L., Peters, U., Moreno, V. & Gauderman, W. J., Mar 1 2023, In: Cancer Epidemiology Biomarkers and Prevention. 32, 3, p. 315-328 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Genetic Loci 100%
  • Colorectal Neoplasms 65%
  • Smoking 59%
  • Genotype 58%
  • Genome 55%

• Identifying metabolic features of colorectal cancer liability using Mendelian randomization

  Bull, C., Hazelwood, E., Bell, J. A., Tan, V., Constantinescu, A. E., Borges, C., Legge, D., Burrows, K., Huyghe, J. R., Brenner, H., Castellvi-Bel, S., Chan, A. T., Kweon, S. S., Marchand, L. L., Li, L., Cheng, I., Pai, R. K., Figueiredo, J. C., Murphy, N., Gunter, M. J., & 2 othersTimpson, N. J. & Vincent, E. E., Dec 2023, In: eLife. 12, RP87894.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Images in Immunotherapy and Precision Oncology: Angiosarcoma of the Spleen and Liver

  Deshpande, A., Munoz, J., Kelemen, K., Dabak, V., Hanbali, A. & Kurzrock, R., 2023, In: Journal of Immunotherapy and Precision Oncology. 6, 1, p. 56-58 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Hemangiosarcoma 100%
  • Immunotherapy 70%
  • Spleen 62%
  • Liver 41%
  • Ecchymosis 27%

• Incidentally Discovered Right Atrial Mass: A Rare and Unexpected Etiology

  Sykora, D., Chaliki, H. P., Cummings, K. W., Sell-Dottin, K., Stanton, M. L. & Scott, L. R., Mar 1 2023, In: Texas Heart Institute Journal. 50, 2, e217735.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Sarcoma 100%
  • Atrial Flutter 65%
  • Heart Neoplasms 64%
  • Transesophageal Echocardiography 59%
  • Thrombosis 40%

• Late Onset of Rivaroxaban-Associated Anti-Neutrophil Cytoplasmic Antibody–Associated Vasculitis

  Agarwal, M., Cummings, K., Larsen, B., Chopra, M. & Rodriguez-Pla, A., Jan 1 2023, In: Journal of Investigative Medicine High Impact Case Reports. 11

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Rivaroxaban 100%
  • Antibodies 96%
  • Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis 91%
  • Vasculitis 78%
  • Antineutrophil Cytoplasmic Antibodies 63%

• Longitudinal expression profiling identifies a poor risk subset of patients with ABC-type diffuse large B-cell lymphoma

  Bewicke-Copley, F., Korfi, K., Araf, S., Hodkinson, B., Kumar, E., Cummin, T., Ashton-Key, M., Barrans, S., van Hoppe, S., Burton, C., Elshiekh, M., Rule, S., Crosbie, N., Clear, A., Calaminici, M., Runge, H., Hills, R. K., Scott, D. W., Rimsza, L. M., Menon, G., & 16 othersSha, C., Davies, J. R., Nagano, A., Davies, A., Painter, D., Smith, A., Gribben, J., Naresh, K. N., Westhead, D. R., Okosun, J., Steele, A., Hodson, D. J., Balasubramanian, S., Johnson, P., Wang, J. & Fitzgibbon, J., Mar 14 2023, In: Blood Advances. 7, 5, p. 845-855 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lymphoma, Large B-Cell, Diffuse 100%
  • Recurrence 50%
  • carboxyl radical 34%
  • Germinal Center 23%
  • Clinical Trials 12%

• Lymphoid Interstitial Pneumonia (LIP) Revisited: A Critical Reappraisal of the Histologic Spectrum of "Radiologic" and "Pathologic" LIP in the Context of Diffuse Benign Lymphoid Proliferations of the Lung

  Fraune, C., Churg, A., Yi, E. S., Khoor, A., Kelemen, K., Larsen, B. T., Butt, Y. M., Smith, M. L., Gotway, M. B., Ryu, J. H. & Tazelaar, H. D., Mar 1 2023, In: American Journal of Surgical Pathology. 47, 3, p. 281-295 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Lymphoid Interstitial Pneumonia 100%
  • Lung 30%
  • Thorax 6%
  • Idiopathic Interstitial Pneumonias 4%
  • Immune System Diseases 3%

• Mediastinal large B cell lymphoma and surrounding gray areas: a report of the lymphoma workshop of the 20th meeting of the European Association for Haematopathology

  Gibson, S. E., Dojcinov, S., Dotlic, S., Hartmann, S., Hsi, E. D., Klimkowska, M., Melle, F., Pileri, S. A., Ramsower, C. A., Rech, K., Rimsza, L. M., Rodriguez-Pinilla, S. M., Tousseyn, T. A., de Jong, D. & Sabattini, E., Dec 2023, In: Virchows Archiv. 483, 6, p. 733-749 17 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • B-Cell Lymphoma 100%
  • Lymphoma 80%
  • Education 60%
  • Lymphoma, Large B-Cell, Diffuse 36%
  • Hodgkin Disease 33%

• Molecular and Immunophenotypic Correlates of Metastatic Epithelioid Angiomyolipoma Include Alterations of TP53, RB1, and ATRX

  McCarthy, M. R., Nichols, P. E., Sharma, V., Stanton, M. L., Reynolds, J. P., Pitel, B. A., Halling, K. C., Lohse, C. M., Herrera-Hernandez, L., Thompson, R. H., Leibovich, B. C., Jimenez, R. E., Boorjian, S. A., Cheville, J. C. & Gupta, S., Jul 2023, In: Archives of Pathology and Laboratory Medicine. 147, 7, p. 817-825 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Angiomyolipoma 100%
  • Immunohistochemistry 25%
  • Tumor Suppressor Genes 18%
  • High-Throughput Nucleotide Sequencing 17%
  • Registries 14%

• Molecular Characteristics of Early-Onset Colorectal Cancer According to Detailed Anatomical Locations: Comparison With Later-Onset Cases

  Ugai, T., Haruki, K., Harrison, T. A., Cao, Y., Qu, C., Chan, A. T., Campbell, P. T., Akimoto, N., Berndt, S., Brenner, H., Buchanan, D. D., Chang-Claude, J., Fujiyoshi, K., Gallinger, S. J., Gunter, M. J., Hidaka, A., Hoffmeister, M., Hsu, L., Jenkins, M. A., Milne, R. L., & 21 othersMoreno, V., Newcomb, P. A., Nishihara, R., Pai, R. K., Sakoda, L. C., Slattery, M. L., Sun, W., Amitay, E. L., Alwers, E., Thibodeau, S. N., Toland, A. E., Van Guelpen, B., Woods, M. O., Zaidi, S. H., Potter, J. D., Giannakis, M., Song, M., Nowak, J. A., Phipps, A. I., Peters, U. & Ogino, S., Apr 1 2023, In: American Journal of Gastroenterology. 118, 4, p. 712-726 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Microsatellite Instability 100%
  • Colorectal Neoplasms 86%
  • Ascending Colon 70%
  • CpG Islands 65%
  • Rectum 53%

• Molecular classification and identification of an aggressive signature in low-grade B-cell lymphomas

  Hopper, M. A., Wenzl, K., Hartert, K. T., Krull, J. E., Dropik, A. R., Novak, J. P., Manske, M. K., Serres, M. K. R., Sarangi, V., Larson, M. C., Maurer, M. J., Yang, Z. Z., Paludo, J., McPhail, E. D., Habermann, T. M., Link, B. K., Rimsza, L. M., Ansell, S. M., Cerhan, J. R., Jevremovic, D., & 1 othersNovak, A. J., Oct 2023, In: Hematological Oncology. 41, 4, p. 644-654 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • B-Cell Lymphoma 100%
  • Non-Hodgkin's Lymphoma 91%
  • cdc Genes 30%
  • Whole Exome Sequencing 28%
  • Machine Learning 27%

• Overcoming the Interobserver Variability in Lung Adenocarcinoma Subtyping: A Clustering Approach to Establish a Ground Truth for Downstream Applications

  Lami, K., Bychkov, A., Matsumoto, K., Attanoos, R., Berezowska, S., Brcic, L., Cavazza, A., English, J. C., Fabro, A. T., Ishida, K., Kashima, Y., Larsen, B. T., Marchevsky, A. M., Miyazaki, T., Morimoto, S., Roden, A. C., Schneider, F., Soshi, M., Smith, M. L., Tabata, K., & 6 othersTakano, A. M., Tanaka, K., Tanaka, T., Tsuchiya, T., Nagayasu, T. & Fukuoka, J., Aug 2023, In: Archives of Pathology and Laboratory Medicine. 147, 8, p. 888-895 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Adenocarcinoma of Lung 90%
  • Pathologists 83%
  • Cluster Analysis 76%
  • Histology 11%
  • Pathology 8%