Jacksonville, FL

Research output

Research output per year 1968 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 12917 Article
• 1829 Review article
• 644 Letter
• 579 Comment/debate
• 919 More
  • 351 Editorial
  • 340 Chapter
  • 123 Short survey
  • 61 Conference contribution
  • 16 Book
  • 16 Foreword/postscript
  • 10 Conference article
  • 2 Paper

Research output per year

Research output per year

Search results

• 2022

  Neural Transformers for Intraductal Papillary Mucosal Neoplasms (IPMN) Classification in MRI images

  Salanitri, F. P., Bellitto, G., Palazzo, S., Irmakci, I., Wallace, M., Bolan, C., Engels, M., Hoogenboom, S., Aldinucci, M., Bagci, U., Giordano, D. & Spampinato, C., 2022, 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2022. Institute of Electrical and Electronics Engineers Inc., p. 475-479 5 p. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2022-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Magnetic resonance imaging 100%
  • Pancreatic Neoplasms 45%
  • Convolutional neural networks 43%
  • Deep learning 42%
  • Artificial intelligence 41%
• 2020

  Automated sample preparation for nucleosome positioning analysis using droplet microfluidics

  Xu, Y., Lee, J. H., Zhao, Y., Li, Z., Ordog, T. & Bailey, R. C., 2020, 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017. Chemical and Biological Microsystems Society, p. 213-214 2 p. (21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microfluidics 100%
  • Sample Preparation 79%
  • DNA 65%
  • Assays 36%
  • Enzymes 36%

• Diagnosing Colorectal Polyps in the Wild with Capsule Networks

  Lalonde, R., Kandel, P., Spampinato, C., Wallace, M. B. & Bagci, U., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 1086-1090 5 p. 9098411. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Biopsy 100%
  • Polyps 78%
  • Capsules 68%
  • Large dataset 41%
  • Image classification 40%
  3 Scopus citations

• Neural networks for in situ detection of glioma infiltration using optical coherence tomography

  Juarez-Chambi, R. M., Kut, C., Chaichana, K. L., Quinones-Hinojosa, A., Li, X. & Jo, J., 2020, Medical Imaging 2020: Computer-Aided Diagnosis. Hahn, H. K. & Mazurowski, M. A. (eds.). SPIE, 113142U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11314).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical tomography 100%
  • Infiltration 85%
  • infiltration 84%
  • Optical Coherence Tomography 73%
  • Glioma 67%
• 2019

  A Method for Multi-day Tracking of Gastrointestinal Smooth Muscle Contractile Patterns in Organotypic Culture

  Du, P., Mazzone, A., Calder, S., Qian, A., Gibbons, S. J., Farrugia, G. & Beyder, A., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 4791-4794 4 p. 8857365. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Muscle 100%
  • Smooth Muscle 94%
  • Tissue 91%
  • Gastrointestinal Motility 87%
  • Proof of Concept Study 44%

• A Pipeline for the Registration of Calcium Transient Data to Structural Networks of the Interstitial Cells of Cajal

  Qian, A., Means, S., Malysz, J., Farrugia, G., Gibbons, S. J. & Du, P., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 2765-2768 4 p. 8857103. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Interstitial Cells of Cajal 100%
  • Calcium 76%
  • Cells 68%
  • Pipelines 53%
  • Proteins 32%

• Feasibility of High-Resolution Electrical Mapping for Characterizing Conduction Blocks Created by Gastric Ablation

  Aghababaie, Z., Chan, C. H. A., Paskaranandavadivel, N., Beyder, A., Farrugia, G., Asirvatham, S., O'Grady, G., Cheng, L. K. & Angeli, T. R., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 170-173 4 p. 8856406. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Ablation 100%
  • Stomach 58%
  • Spatio-Temporal Analysis 19%
  • Interstitial Cells of Cajal 19%
  • Wave propagation 17%
  5 Scopus citations

• INN: Inflated Neural Networks for IPMN Diagnosis

  LaLonde, R., Tanner, I., Nikiforaki, K., Papadakis, G. Z., Kandel, P., Bolan, C. W., Wallace, M. B. & Bagci, U., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 101-109 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Magnetic resonance imaging 100%
  • Multisequences 98%
  • Network Architecture 96%
  • Neural Networks 89%
  • Network architecture 88%
  1 Scopus citations

• PAN: Projective Adversarial Network for Medical Image Segmentation

  Khosravan, N., Mortazi, A., Wallace, M. & Bagci, U., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 68-76 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11769 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Medical Image 100%
  • Image Segmentation 92%
  • Segmentation 82%
  • Image segmentation 64%
  • Semantics 58%
  6 Scopus citations

• Porous chitosan-chondroitin sulfate scaffolds to mimic the prostate cancer microenvironment

  Xu, K., Ganapathy, K., Wang, Z., Copland, J. A., Chakrabarti, R. & Florczyk, S. J., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 643 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • chitosan sulfate 100%
  • Chitosan 75%
  • Chondroitin Sulfates 66%
  • Chondroitin Sulfate 65%
  • Scaffolds 63%

• Xavier Electromyographic Wheelchair Control and Virtual Training

  Manero, A., Oskarsson, B., Sparkman, J., Smith, P. A., Dombrowski, M., Peddinti, M., Rodriguez, A., Vila, J. & Jones, B., 2019, Virtual, Augmented and Mixed Reality. Multimodal Interaction - 11th International Conference, VAMR 2019, Held as Part of the 21st HCI International Conference, HCII 2019, Proceedings. Chen, J. Y. C. & Fragomeni, G. (eds.). Springer Verlag, p. 133-142 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11574 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Wheelchairs 100%
  • Training 89%
  • Muscle 74%
  • Electromyography 51%
  • Isolation 33%
• 2018

  Deep multi-modal classification of intraductal papillary mucinous neoplasms (IPMN) with canonical correlation analysis

  Hussein, S., Kandel, P., Corral, J. E., Bolan, C. W., Wallace, M. B. & Bagci, U., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 800-804 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Magnetic resonance imaging 100%
  • Risk assessment 46%
  • Convolutional neural networks 43%
  • Pancreatic Neoplasms 36%
  • Risk Assessment 31%
  3 Scopus citations

• Detection of brain tumor margins using optical coherence tomography

  Juarez-Chambi, R. M., Kut, C., Rico-Jimenez, J., Campos-Delgado, D. U., Quinones-Hinojosa, A., Li, X. & Jo, J., 2018, Medical Imaging 2018: Computer-Aided Diagnosis. Mori, K. & Petrick, N. (eds.). SPIE, 105751R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10575).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical tomography 100%
  • margins 79%
  • Tumors 74%
  • Optical Coherence Tomography 73%
  • tumors 70%
  1 Scopus citations

• Detection of brain tumor margins using optical coherence tomography

  Juarez-Chambi, R. M., Kut, C., Rico-Jimenez, J., Campos-Delgado, D. U., Quinones-Hinojosa, A., Li, X. & Jo, J., Jan 1 2018, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXII. SPIE, Vol. 10483. 104832Y

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical tomography 100%
  • margins 79%
  • Tumors 74%
  • Optical Coherence Tomography 73%
  • tumors 70%

• Intra-operative color mapping of brain cancer infiltration with real-time quantitative OCT

  Park, H. C., Yuan, S. W., Kut, C., Sarabia Estrada, R., Guerrero Cazares, H., Shah, S. R., Rodriguez, F. J., Chaichana, K., Quinones-Hinojosa, A. & Li, X., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, Vol. Part F90-OTS 2018.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Infiltration 100%
  • Surgery 86%
  • Brain 70%
  • Imaging techniques 65%
  • Color 61%

• Measuring Ocular Counter Roll: THEIA Device

  Emord, N. G., Aceros, J. & Zapala, D. A., Oct 1 2018, Southeastcon 2018. Institute of Electrical and Electronics Engineers Inc., 8479206. (Conference Proceedings - IEEE SOUTHEASTCON; vol. 2018-April).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 3D printers 100%
  • Computer vision 85%
• 2017

  Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images

  Ehteshami Bejnordi, B., Lin, J., Glass, B., Mullooly, M., Gierach, G. L., Sherman, M. E., Karssemeijer, N., Van Der Laak, J. & Beck, A. H., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 929-932 4 p. 7950668. (Proceedings - International Symposium on Biomedical Imaging).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Deep Learning 100%
  • Tumors 74%
  • Deep learning 64%
  • Tissue 61%
  • Epithelial Cells 56%
  23 Scopus citations

• Detection of lipopolysaccharides in serum using a waveguide-based optical biosensor

  Noormohamed, A., Stromberg, L. R., Anderson, A. S., Karim, Z., Dighe, P., Kempaiah, P., Ong'echa, J. M., Perkins, D. J., Doggett, N., McMahon, B. & Mukundan, H., 2017, Optical Diagnostics and Sensing XVII: Toward Point-of-Care Diagnostics. Cote, G. L. (ed.). SPIE, 100720A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10072).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathogens 100%
  • Pathogens 96%
  • Lipoproteins 91%
  • infectious diseases 89%
  • Biosensors 87%

• Human factors applications to mitigate design limitations of a wearable telemedicine heart rate monitor

  Lowndes, B., Finnie, D., Hathaway, J., Ridgeway, J., Vickers-Douglas, K., Bruce, C. & Hallbeck, S., 2017, Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017. American Society of Mechanical Engineers, (Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Iterative implementation of a remote cardiac patient monitoring device using qualitative analysis and human factors engineering

  Lowndes, B. R., Finnie, D., Hathaway, J., Ridgeway, J. L., Vickers-Douglas, K., Bruce, C. & Hallbeck, M. S., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 1081-1085 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Patient monitoring 100%
  • Human engineering 79%
  • monitoring 56%
  • engineering 46%
  • Clinical Trials 27%
  1 Scopus citations

• Ultrasound tomography imaging with waveform sound speed: Parenchymal changes in women undergoing tamoxifen therapy

  Sak, M., Duric, N., Littrup, P., Sherman, M. & Gierach, G., 2017, Medical Imaging 2017: Ultrasonic Imaging and Tomography. Duric, N., Duric, N. & Heyde, B. (eds.). SPIE, 101390W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10139).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Tamoxifen 100%
  • Tomography 70%
  • therapy 70%
  • waveforms 64%
  • Ultrasonics 62%
  4 Scopus citations
• 2016

  Quantitative characterization of brain β-amyloid in 718 normal subjects using a joint PiB/FDG PET image histogram

  Camp, J. J., Hanson, D. P., Lowe, V. J., Kemp, B. J., Senjem, M. L., Murray, M. E., Dickson, D. W., Parisi, J. E., Petersen, R. C., Robb, R. A. & Holmes, D. R., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. Tourassi, G. D. & Armato, S. G. (eds.). SPIE, 97852V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9785).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Amyloid 100%
  • histograms 64%
  • autopsies 62%
  • brain 55%
  • Brain 48%

• Towards direct speech synthesis from ECoG: A pilot study

  Herff, C., Johnson, G., Diener, L., Shih, J., Krusienski, D. & Schultz, T., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1540-1543 4 p. 7591004

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Speech synthesis 100%
  • Bioelectric potentials 26%
  • Communication 24%
  • Brain computer interface 23%
  • Brain-Computer Interfaces 22%
  22 Scopus citations

• Using ultrasound tomography to identify the distributions of density throughout the breast

  Sak, M., Duric, N., Littrup, P., Sherman, M. E. & Gierach, G. L., 2016, Medical Imaging 2016: Ultrasonic Imaging and Tomography. Heyde, B., Heyde, B. & Duric, N. (eds.). SPIE, 979019. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9790).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Breast Density 100%
  • breast 76%
  • Tomography 69%
  • Ultrasonics 61%
  • tomography 57%
  1 Scopus citations
• 2015

  Bioinformatics strategies for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing

  Champion, M. D., Hlady, R. A., Yan, H., Evans, J., Nie, J., Lee, J. H., Bogenberger, J., Nandakumar, K., Davila, J., Moore, R., Nair, A., O'Brien, D., Zhu, Y. X., Kortum, K. M., Ordog, T., Zhang, Z., Joseph, R. W., Stewart, A. K., Kocher, J. P., Jonasch, E., & 3 othersRobertson, K. D., Tibes, R. & Ho, T. H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. Pastor, O., Sinoquet, C., Fred, A., Gamboa, H. & Elias, D. (eds.). SciTePress, p. 163-170 8 p. (BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • RNA Editing 100%
  • Deregulation 92%
  • Bioinformatics 78%
  • Computational Biology 67%
  • Epigenomics 63%

• Comparison of breast density measurements made using ultrasound tomography and mammography

  Sak, M., Duric, N., Littrup, P., Bey-Knight, L., Krycia, M., Sherman, M. E., Boyd, N. & Gierach, G. L., 2015, Medical Imaging 2015: Ultrasonic Imaging and Tomography. SPIE, Vol. 9419. 94190R

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Mammary Ultrasonography 100%
  • Breast Density 96%
  • Mammography 90%
  • breast 74%
  • Tomography 67%
  4 Scopus citations

• Development of an MR and CT compatible non-invasive temperature based optical fiber respiration sensor for use in radiotherapy

  Smith, A., Kim, S., Serago, C., Hintenlang, K., Pooley, R. & Hintenlang, D., 2015, IFMBE Proceedings. Springer Verlag, Vol. 51. p. 603-606 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Radiotherapy 100%
  • Optical fibers 84%
  • Magnetic Resonance 84%
  • Magnetic resonance 83%
  • Tomography 77%
  1 Scopus citations

• In vitro imaging of kidney stones using ultra-short echo-time magnetic resonance

  Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Giesbrandt, J., Williams, J. & Haley, W., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1466-1469 4 p. 7164153. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Kidney Calculi 100%
  • Magnetic resonance 85%
  • Imaging techniques 62%
  • Magnetic Resonance Imaging 54%
  • In Vitro Techniques 36%

• Motion artifacts in kidney stone imaging using dual-energy CT. A phantom study comparing single-source and dual-source scanners

  Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Williams, J. & Haley, W., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1159-1162 4 p. 7164078. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Kidney Calculi 100%
  • Phantoms 87%
  • Artifacts 79%
  • Tomography 79%
  • Acids 74%
• 2014

  Automatic synthesis of cine viability MRI images for evaluation of coronary heart disease

  Hassanein, A. S., Khalifa, A. M., Al-Atabany, W., El-Wakad, M. T., Shapiro, B. & Ibrahim, E. S. H., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 5117-5120 4 p. 6944776. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Cine Magnetic Resonance Imaging 100%
  • Image Enhancement 98%
  • Image enhancement 77%
  • Magnetic resonance 71%
  • Coronary Disease 60%
  3 Scopus citations

• Comparison of sound speed measurements on two different ultrasound tomography devices

  Sak, M., Duric, N., Littrup, P., Bey-Knight, L., Sherman, M., Gierach, G. & Malyarenko, A., 2014, Medical Imaging 2014: Ultrasonic Imaging and Tomography. SPIE, 90400S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9040).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Velocity of Sound 100%
  • breast 77%
  • Tomography 77%
  • Ultrasonics 68%
  • tomography 63%
  4 Scopus citations

• Kidney stone imaging with 3D ultra-short echo time (UTE) magnetic resonance imaging. A phantom study

  Ibrahim, E. S. H., Pooley, R. A., Bridges, M. D., Cernigliaro, J. G. & Haley, W. E., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 2356-2359 4 p. 6944094

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Kidney Calculi 100%
  • Phantoms 87%
  • Magnetic resonance 85%
  • Imaging techniques 62%
  • Magnetic Resonance Imaging 54%
  1 Scopus citations

• Matrix compliance regulates tetraploidy in breast cancer cells

  Simi, A. K., Radisky, D. C. & Nelson, C. M., 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, Vol. 2. p. 716 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Quantitative characterization of brain β-amyloid using a joint PiB/FDG PET image histogram

  Camp, J. J., Hanson, D. P., Holmes, D. R., Kemp, B. J., Senjem, M. L., Murray, M. E., Dickson, D. W., Parisi, J. E., Petersen, R. C., Lowe, V. J. & Robb, R. A., 2014, Medical Imaging 2014: Computer-Aided Diagnosis. SPIE, 90352A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9035).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Amyloid 100%
  • histograms 64%
  • Fluorodeoxyglucose F18 62%
  • brain 55%
  • Brain 48%
  1 Scopus citations
• 2013

  Breast density measurements using ultrasound tomography for patients undergoing tamoxifen treatment

  Sak, M., Duric, N., Littrup, P., Li, C., Bey-Knight, L., Sherman, M., Boyd, N. & Gierach, G., 2013, Medical Imaging 2013: Ultrasonic Imaging, Tomography, and Therapy. 86751E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8675).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Breast Density 100%
  • Tamoxifen 99%
  • breast 76%
  • Tomography 69%
  • Ultrasonics 61%
  11 Scopus citations

• Cellular automaton model for simulating tissue-specific intestinal electrophysiological activity

  Gao, J., Du, P., O'Grady, G., Archer, R., Gibbons, S. J., Farrugia, G. & Cheng, L. K., 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 5537-5540 4 p. 6610804. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Interstitial Cells of Cajal 100%
  • Cellular automata 78%
  • Tissue 59%
  • Wave propagation 55%
  • Cells 17%
  4 Scopus citations

• Characterization of human breast cancer by scanning acoustic microscopy

  Chen, D., Malyarenko, E., Seviaryn, F., Yuan, Y., Sherman, M., Bandyopadhyay, S., Gierach, G., Greenway, C. W., Maeva, E., Strumban, E., Duric, N. & Maev, R., Jun 5 2013, Medical Imaging 2013: Ultrasonic Imaging, Tomography, and Therapy. 86750M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8675).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Acoustic Microscopy 100%
  • breast 60%
  • cancer 54%
  • Ultrasonic Property 49%
  • Tissue 48%
  1 Scopus citations

• Quantitative analysis of TDLUs using adaptive morphological shape techniques

  Rosebrock, A., Caban, J. J., Figueroa, J., Gierach, G., Linville, L., Hewitt, S. & Sherman, M., 2013, Medical Imaging 2013: Digital Pathology. 86760N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8676).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • ducts 100%
  • quantitative analysis 99%
  • Ducts 98%
  • Breast 75%
  • breast 65%
  13 Scopus citations
• 2012

  Detecting glioma tumor features in human ex vivo samples using swept-source OCT

  Kut, C., Xi, J., Raza, S., Mavadia, J., Guerrero-Cazares, H., McVeigh, E. M., Quinones-Hinojosa, A. & Li, X., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. BTu3A.77 (Biomedical Optics, BIOMED 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • necrosis 100%
  • tumors 69%
  • brain 69%
  • Glioma 67%
  • attenuation 56%

• Spectral components of the P300 speller response in and adjacent to the hippocampus

  Krusienski, D. J. & Shih, J. J., Dec 1 2012, Proceedings 2012 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2012. p. 274-277 4 p. 6377713. (Conference Proceedings - IEEE International Conference on Systems, Man and Cybernetics).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Electrodes 100%
  • Electroencephalography 83%
  • Brain computer interface 49%
  • Frequency bands 38%
  • Brain 36%
  1 Scopus citations
• 2011

  Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos

  André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B. & Ayache, N., 2011, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2011 - 14th International Conference, Proceedings. PART 3 ed. p. 297-304 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6893 LNCS, no. PART 3).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Distance Learning 100%
  • Content based retrieval 71%
  • Retrieval 63%
  • Distance education 63%
  • Content-based Retrieval 53%
  10 Scopus citations

• Spectral components of the P300 speller response in electrocorticography

  Krusienski, D. J. & Shih, J. J., Jul 20 2011, 2011 5th International IEEE/EMBS Conference on Neural Engineering, NER 2011. p. 282-285 4 p. 5910542. (2011 5th International IEEE/EMBS Conference on Neural Engineering, NER 2011).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Electrocorticography 100%
  • P300 Event-Related Potentials 99%
  • Brain-Computer Interfaces 24%
  • Scalp 18%
  • Electroencephalography 15%
  5 Scopus citations
• 2010

  A case study on the relation between electroencephalographic and electrocorticographic event-related potentials

  Krusienski, D. J. & Shih, J. J., 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10. p. 6019-6022 4 p. 5627603. (2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Brain computer interface 100%
  • Evoked Potentials 85%
  • Brain-Computer Interfaces 59%
  • Electrodes 33%
  • Drug Resistant Epilepsy 25%
  6 Scopus citations

• An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis

  André, B., Vercauteren, T., Buchner, A. M., Shahid, M. W., Wallace, M. B. & Ayache, N., 2010, Medical Image Computing and Computer-Assisted Intervention, MICCAI2010 - 13th International Conference, Proceedings. PART 2 ed. p. 480-487 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6362 LNCS, no. PART 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Image Retrieval 100%
  • Retrieval 68%
  • Training 57%
  • Image retrieval 56%
  • Video Retrieval 38%
  14 Scopus citations

• Introducing space and time in local feature-based endomicroscopic image retrieval

  André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B. & Ayache, N., 2010, Medical Content-Based Retrieval for Clinical Decision Support - First MICCAI International Workshop, MCBR-CDS 2009, Revised Selected Papers. p. 18-30 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5853 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Image Retrieval 100%
  • Local Features 81%
  • Image retrieval 56%
  • Field of View 26%
  • Detectors 21%
  16 Scopus citations

• Using mosaicing and visualwords

  André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B. & Ayache, N., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 1419-1422 4 p. 5490265. (2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Pathology 100%
  • Physicians 27%
  • Databases 26%
  16 Scopus citations
• 2009

  Burn, freeze or photo-ablate? Comparative symptom profile in Barrett's dysplasia patients undergoing endoscopic ablation

  Gill, K. R. S., Gross, S. A., Greenwald, B. D., Hemminger, L. L. & Wolfsen, H. C., Dec 1 2009, 12th World Congress of the International Photodynamic Association - Photodynamic Therapy: Back to the Future. 73804J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7380).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Porfimer Sodium 100%
  • Ablation 73%
  • Photodynamic therapy 73%
  • ablation 56%
  • Dihematoporphyrin Ether 44%

• Endomicroscopic image retrieval and classification using invariant visual features

  André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B. & Ayache, N., 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. p. 346-349 4 p. 5193055. (Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Image classification 100%
  • Image retrieval 97%
  • Databases 37%
  21 Scopus citations

• Sex differences in a murine model of Sjögren's syndrome

  Iháková, D., Talor, M. V., Barin, J. G., Baldeviano, G. C., Fairweather, D., Rose, N. R. & Burek, C. L., Sep 2009, Contemporary Challenges in Autoimmunity. Blackwell Publishing Inc., p. 378-383 6 p. (Annals of the New York Academy of Sciences; vol. 1173).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Sex Differences 100%
  • Sex Characteristics 67%
  • Syndrome 63%
  • Cells 51%
  • B-Lymphocytes 37%
  20 Scopus citations

• Variables in photodynamic therapy for Barrett's esophagus

  Jones, L. R., Preyer, N. W., Buchanan, J., Reynolds, D. M., Wolfsen, H. C., Wallace, M. B. & Gill, K. R. S., Dec 1 2009, 12th World Congress of the International Photodynamic Association - Photodynamic Therapy: Back to the Future. 73800N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7380).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Porfimer Sodium 100%
  • Photodynamic therapy 88%
  • Dihematoporphyrin Ether 71%
  • esophagus 71%
  • Barrett Esophagus 58%