Internal Medicine

Research Output 1981 2020

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2019

A Method for Multi-day Tracking of Gastrointestinal Smooth Muscle Contractile Patterns in Organotypic Culture

Du, P., Mazzone, A., Calder, S., Qian, A., Gibbons, S. J., Farrugia, G. & Beyder, A., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 4791-4794 4 p. 8857365. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Smooth Muscle
Muscle
Gastrointestinal Motility
Tissue
Physiology

A Pipeline for the Registration of Calcium Transient Data to Structural Networks of the Interstitial Cells of Cajal

Qian, A., Means, S., Malysz, J., Farrugia, G., Gibbons, S. J. & Du, P., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 2765-2768 4 p. 8857103. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interstitial Cells of Cajal
Calcium
Pipelines
Cells
Tissue

Feasibility of High-Resolution Electrical Mapping for Characterizing Conduction Blocks Created by Gastric Ablation

Aghababaie, Z., Chan, C. H. A., Paskaranandavadivel, N., Beyder, A., Farrugia, G., Asirvatham, S., O'Grady, G., Cheng, L. K. & Angeli, T. R., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 170-173 4 p. 8856406. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ablation
Stomach
Interstitial Cells of Cajal
Spatio-Temporal Analysis
Temperature control
2018
2 Citations (Scopus)

Deep multi-modal classification of intraductal papillary mucinous neoplasms (IPMN) with canonical correlation analysis

Hussein, S., Kandel, P., Corral, J. E., Bolan, C. W., Wallace, M. B. & Bagci, U., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 800-804 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance imaging
Risk assessment
Neoplasms
Pancreatic Neoplasms
Neural networks
2017

Human factors applications to mitigate design limitations of a wearable telemedicine heart rate monitor

Lowndes, B., Finnie, D., Hathaway, J., Ridgeway, J., Vickers-Douglas, K., Bruce, C. J. & Hallbeck, S., Jan 1 2017, Frontiers in Biomedical Devices, BIOMED - 2017 Design of Medical Devices Conference, DMD 2017. American Society of Mechanical Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Telemedicine
Human engineering
1 Citation (Scopus)

Iterative implementation of a remote cardiac patient monitoring device using qualitative analysis and human factors engineering

Lowndes, B. R., Finnie, D., Hathaway, J., Ridgeway, J. L., Vickers-Douglas, K., Bruce, C. J. & Hallbeck, S., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 1081-1085 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient monitoring
Human engineering
engineering
monitoring
Education
2015

Bioinformatics strategies for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing

Champion, M. D., Hlady, R. A., Yan, H. D., Evans, J., Nie, J., Lee, J. H., Bogenberger, J., Nandakumar, K., Davila, J., Moore, R., Nair, A., O'Brien, D., Zhu, Y. X., Kortum, K. M., Ordog, T., Zhang, Z., Joseph, R. W., Stewart, A. K., Kocher, J-P., Jonasch, E. & 3 others, Robertson, K. D., Tibes, R. & Ho, T. H., 2015, BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015. SciTePress, p. 163-170 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA Editing
Deregulation
Bioinformatics
Computational Biology
RNA

In vitro imaging of kidney stones using ultra-short echo-time magnetic resonance

Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Giesbrandt, J., Williams, J. & Haley, W. E., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 1466-1469 4 p. 7164153

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kidney Calculi
Magnetic resonance
Magnetic Resonance Spectroscopy
Magnetic Resonance Imaging
Imaging techniques

Motion artifacts in kidney stone imaging using dual-energy CT. A phantom study comparing single-source and dual-source scanners

Ibrahim, E. S., Pooley, R., Cernigliaro, J., Bridges, M., Williams, J. & Haley, W. E., Jul 21 2015, Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July. p. 1159-1162 4 p. 7164078

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kidney Calculi
Artifacts
Tomography
Imaging techniques
Acids
2014
2 Citations (Scopus)

Automatic synthesis of cine viability MRI images for evaluation of coronary heart disease

Hassanein, A. S., Khalifa, A. M., Al-Atabany, W., El-Wakad, M. T., Shapiro, B. P. & Ibrahim, E. S. H., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 5117-5120 4 p. 6944776

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
Image Enhancement
Image enhancement
Magnetic resonance
Coronary Disease
1 Citation (Scopus)

Kidney stone imaging with 3D ultra-short echo time (UTE) magnetic resonance imaging. A phantom study

Ibrahim, E. S. H., Pooley, R. A., Bridges, M. D., Cernigliaro, J. G. & Haley, W. E., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 2356-2359 4 p. 6944094

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kidney Calculi
Magnetic resonance
Magnetic Resonance Imaging
Imaging techniques
Sepharose
2013
3 Citations (Scopus)

Cellular automaton model for simulating tissue-specific intestinal electrophysiological activity

Gao, J., Du, P., O'Grady, G., Archer, R., Gibbons, S. J., Farrugia, G. & Cheng, L. K., 2013, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 5537-5540 4 p. 6610804

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interstitial Cells of Cajal
Cellular automata
Tissue
Wave propagation
Chemical activation
2011

Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos

André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B. & Ayache, N., 2011, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 3 ed. Vol. 6893 LNCS. p. 297-304 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6893 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Content based retrieval
Distance Learning
Distance education
Retrieval
Content-based Retrieval
2010

An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis

André, B., Vercauteren, T., Buchner, A. M., Shahid, M. W., Wallace, M. B. & Ayache, N., 2010, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 2 ed. Vol. 6362 LNCS. p. 480-487 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6362 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image retrieval
Image Retrieval
Retrieval
Predictors
Video Retrieval
15 Citations (Scopus)

Introducing space and time in local feature-based endomicroscopic image retrieval

André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B. & Ayache, N., 2010, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5853 LNCS. p. 18-30 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5853 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Local Features
Image retrieval
Image Retrieval
Detectors
Field of View
13 Citations (Scopus)

Using mosaicing and visualwords

André, B., Vercauteren, T., Buchner, A. M., Wallace, M. B. & Ayache, N., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 1419-1422 4 p. 5490265

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pathology
Databases
Physicians
2009

Burn, freeze or photo-ablate? Comparative symptom profile in Barrett's dysplasia patients undergoing endoscopic ablation

Gill, K. R. S., Gross, S. A., Greenwald, B. D., Hemminger, L. L. & Wolfsen, H. C., 2009, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7380. 73804J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ablation
Dihematoporphyrin Ether
ablation
Photodynamic therapy
esophagus
18 Citations (Scopus)

Endomicroscopic image retrieval and classification using invariant visual features

André, B., Vercauteren, T., Perchant, A., Buchner, A. M., Wallace, M. B. & Ayache, N., 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. p. 346-349 4 p. 5193055

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image classification
Image retrieval
Databases

Variables in photodynamic therapy for Barrett's esophagus

Jones, L. R., Preyer, N. W., Buchanan, J., Reynolds, D. M., Wolfsen, H. C., Wallace, M. B. & Gill, K. R. S., 2009, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7380. 73800N

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dihematoporphyrin Ether
esophagus
Photodynamic therapy
Barrett Esophagus
Photochemotherapy
2008

Monte carlo model of stricture formation in esophageal photodynamic therapy

Preyer, N. W., Jones, L. R., Reynolds, D. M., Wolfsen, H. C. & Wallace, M. B., 2008, Biomedical Optics, BIOMED 2008.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photodynamic therapy
swine
therapy
esophagus
simulation
2007
1 Citation (Scopus)

Computer aided classification of cell nuclei in the gastrointestinal tract a by volume and principal axis

Sagstetter, A. M., Camp, J. J., Lurken, M. S., Szurszewski, J. H., Farrugia, G., Gibbons, S. J. & Robb, R. A., 2007, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. PART 1 ed. Vol. 6514. 65140E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cells
Muscle
Tissue
Pacemakers
Antigens
2006
2 Citations (Scopus)

Light dosimetry calculations for esophageal photodynamic therapy using porfimer sodium

Jones, L. R., Preyer, N. W., Davis, M. A., Grimes, C., Edling, K., Holdgate, N., Wallace, M. B. & Wolfsen, H. C., 2006, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6139. 61391D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photodynamic therapy
Dosimetry
Sodium
Muscle
Scattering
2002
1 Citation (Scopus)

Classification of normal and infarcted myocardium based on statistical analysis of high frequency intracardiac ultrasound RF signal

Hao, X., Bruce, C. J., Pislaru, C. D. & Greenleaf, J. F., 2002, Proceedings of SPIE - The International Society for Optical Engineering. Insana, M. F. & Walker, W. F. (eds.). Vol. 4687. p. 139-146 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

myocardium
statistical analysis
Statistical methods
Ultrasonics
infarction
2001
1 Citation (Scopus)

Identification of reperfused infarcted myocardium from high frequency intracardial ultrasound images using homodyned K distribution

Hao, X., Bruce, C. J., Pislaru, C. D. & Greenleaf, J. F., 2001, Proceedings of the IEEE Ultrasonics Symposium. Vol. 2. p. 1189-1192 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasonics
Imaging techniques
Data acquisition
4 Citations (Scopus)

Trans-urethral ultrasound imaging of the prostate for applications in prostate brachytherapy: Analysis of phantom and in vivo data

Holmes III, D. R., Davis, B., Bruce, C. J., Wilson, T. & Robb, R., 2001, Proceedings of SPIE - The International Society for Optical Engineering. Mun, S. K. (ed.). Vol. 4319. p. 46-52 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

seeds
Ultrasonics
Imaging techniques
Seed
interstitials
2000
52 Citations (Scopus)

A novel region growing method for segmenting ultrasound images

Hao, X., Bruce, C. J., Pislaru, C. D. & Greenleaf, J. F., 2000, Proceedings of the IEEE Ultrasonics Symposium. Schneider, S. C., Levy, M. & McAvoy, B. R. (eds.). Vol. 2. p. 1717-1720 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasonics
Vector spaces
Speckle
Image segmentation
Processing

Photodynamic therapy (PDT) with endoscopic ultrasound for the treatment of esophageal cancer

Woodward, T. A. & Wolfsen, H. C., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3907. p. 422-425 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photodynamic therapy
therapy
Ultrasonics
cancer
Radiotherapy