Health Sciences Research

Research Output 1979 2020

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2011

Human gene/protein synonym dictionary from WikiLinks

Wagholikar, K., Torii, M. & Liu, H. D., 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 462-464 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Genes
Proteins
Literature
Feasibility Studies
3 Citations (Scopus)

Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in MEDLINE abstracts

Chen, Y., Torii, M., Lu, C. T. & Liu, H. D., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 530-537 8 p. 6112425

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alternative Splicing
MEDLINE
Learning algorithms
Learning systems
Classifiers
2 Citations (Scopus)

Model based user interface design for predicting lung cancer treatment outcomes

Zhang, M., Liu, Y., Jiang, Y., Sun, Z. D. & Yang, P., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 75-78 4 p. 6089900

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oncology
User interfaces
Lung Neoplasms
Software
Small Cell Lung Carcinoma

Toward answering time-related questions from adverse event reports using ontology-based approaches

Tao, C., Jiang, G. D., Clark, K., Sharma, D. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 332-334 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
7 Citations (Scopus)

Toward semantic web based knowledge representation and extraction from electronic health records

Tao, C., Pathak, J., Welch, S. R., Bouamrane, M. M., Huff, S. M. & Chute, C. G., 2011, International Conference on Information and Knowledge Management, Proceedings. p. 75-78 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge representation
Knowledge extraction
Electronic health record
Semantic web
Web-based
3 Citations (Scopus)

Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images

Simon, G. J., Li, P. W., Jack, C. R. J. & Vemuri, P. D., 2011, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 369-376 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Trajectories
Magnetic Resonance Imaging
Brain
Neurodegenerative diseases

Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

Pathak, J., Murphy, S. P., Willaert, B. N., Maradit Kremers, H. D., Chute, C. G., Yawn, B. P. & Rocca, W. A., 2011, CEUR Workshop Proceedings. Vol. 833. p. 266-268 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Epidemiology
Terminology
Health
Medicine
Availability
2010

Mash-up of lexwiki and web-protégé for distributed authoring of large-scale biomedical terminologies

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2010, CEUR Workshop Proceedings. Vol. 754.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Machinery
Ontology
Semantics
1 Citation (Scopus)

Modeling care teams at Mayo Clinic

Rohleder, T., Huschka, T., Egginton, J., O'Neil, D. & Woychick, N., 2010, Proceedings - Winter Simulation Conference. p. 2304-2314 11 p. 5678928

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health care
Discrete event simulation
Modeling
Healthcare
Productivity

Pilot study: Agent-based exploration of complex data in a hospital environment

Carmichael, T., Hadzikadic, M. & Gajic, O., 2010, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5980 LNAI. p. 16-26 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5980 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric grounding
Data mining
Agent-based Model
Iterative Process
Bottom-up
2009
12 Citations (Scopus)

A new validity measure for a correlation-based fuzzy C-means clustering algorithm

Zhang, M., Zhang, W., Sicotte, H. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. p. 3865-3868 4 p. 5332582

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fuzzy clustering
Microarrays
Clustering algorithms
Cluster Analysis

Gender and arthroplasty type affect prevalence of moderate-severe pain post total hip arthroplasty

Singh, J. A., Gabriel, S. E. & Lewallen, D., 2009, IFMBE Proceedings. Vol. 23. p. 1640-1643 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tacrine
Arthroplasty
Surgery
Bone
Durability
2 Citations (Scopus)

Integrating r models with web technologies

Zhang, M., Olson, S., Francioni, J., Gegg-Harrison, T., Meng, N., Sun, Z. D. & Yang, P., 2009, HEALTHINF 2009 - Proceedings of the 2nd International Conference on Health Informatics. p. 411-415 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Software
Technology
Software architecture
Software engineering
Statistical Models

LexRDF model: An RDF-based unified model for heterogeneous biomedical ontologies

Tao, C., Pathak, J., Solbrig, H. R., Wei, W. Q. & Chute, C. G., 2009, CEUR Workshop Proceedings. Vol. 521.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Specifications
Terminology
Semantic Web
Application programming interfaces (API)
6 Citations (Scopus)

Porting a cancer treatment prediction to a mobile device

Gegg-Harrison, T., Zhang, M., Meng, N., Sun, Z. D. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. p. 6218-6221 4 p. 5334551

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oncology
Mobile devices
Lung Neoplasms
Equipment and Supplies
Neoplasms
2008
2 Citations (Scopus)

Adopting graph traversal techniques for context-driven value sets extraction from biomedical knowledge sources

Pathak, J., Jiang, G. D., Dwarkanath, S. O., Buntrock, J. D. & Chute, C. G., 2008, Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008. p. 460-467 8 p. 4597226

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Medical information systems
Ontology
Semantics
5 Citations (Scopus)

A fuzzy c-means algorithm using a correlation metrics and gene ontology

Zhang, M., Therneau, T. M., McKenzie, M. A., Li, P. & Yang, P., 2008, Proceedings - International Conference on Pattern Recognition. 4761672

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Genes
Microarrays
Yeast
Functional groups

Comparing the effects of two semantic terminology models on classification of clinical notes: A study of heart murmur findings

Jiang, G. D. & Chute, C. G., 2008, CEUR Workshop Proceedings. Vol. 410. p. 59-65 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Semantics
Decision trees
Information retrieval
Classifiers
6 Citations (Scopus)

Composing web services through automatic reformulation of service specifications

Pathak, J., Basu, S. & Honavar, V., 2008, Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008. Vol. 1. p. 361-369 9 p. 4578483

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Web services
Specifications
Chemical analysis
Flow control
Data structures
23 Citations (Scopus)

Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction

Hwang, T., Tian, Z., Kuang, R. & Kocher, J-P., 2008, Proceedings - IEEE International Conference on Data Mining, ICDM. p. 293-302 10 p. 4781124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Proteins
Genes
Oncology
Data integration

LexSearch: An approach for leveraging semantic annotations to searching ontologies

Pathak, J., Buntrock, J. D. & Chute, C. G., 2008, AAAI Spring Symposium - Technical Report. Vol. SS-08-05. p. 68-73 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Semantics
Search engines
Semantic Web
Data structures
4 Citations (Scopus)

Modular ontology techniques and their applications in the biomedical domain

Pathak, J., Johnson, T. M. & Chute, C. G., 2008, 2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008. p. 351-356 6 p. 4583056

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Medical information systems
Graph theory
Terminology
Interoperability
2007

Aequus communis sententia: Defining levels of interoperability

Elkin, P. L., Froehling, D., Bauer, B. A., Wahner-Roedler, D., Rosenbloom, S. T., Bailey, K. R. & Brown, S. H., 2007, Studies in Health Technology and Informatics. Vol. 129. p. 725-729 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer Systems
Semantics
Interoperability
Specifications
Ontology
2006

Primary Care Practice Portal: A web based management reporting system for administrators, physicians and care teams

Rahman, A. S., Naessens, J. M., Cabanela, R. L. & Anderson, S. S., 2006, CITSA 2006 - 3rd Int. Conf. on Cybernetics and Information Technol., Systems and Applications, Jointly with the 4th Int. Conf. on Computing, Communications and Control Technologies, CCCT 2006 - Proc.. International Institute of Informatics and Systemics, IIIS, Vol. 1. p. 242-245 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

World Wide Web
Decision making
Industry
2005

Strength of suture-tendon interface increased by eyelet modification

Zhao, C. D., Sun, Y. L., Yang, C., Zobitz, M. E., Amadio, P. C. & An, K. N., 2005, Proceedings of the 2005 Summer Bioengineering Conference. Vol. 2005. p. 195-196 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tendons
2004
27 Citations (Scopus)

A system for the analysis of whole-bone strength from helical CT images

Camp, J. J., Karwoski, R. A., Stacy, M. C., Atkinson, E. J., Khosla, S., Melton, L. J., Riggs, B. L. & Robb, R. A., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Amini, A. A. & Mandura, A. (eds.). Vol. 5369. p. 74-88 15 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

bones
Bone
osteoporosis
Minerals
minerals
2001

A microfabricated device for the characterization of biological entities

Chang, H., Ikram, A., Young, M., Kosari, F., Vasmatzis, G., Bhunia, A. & Bashir, R., 2001, Materials Research Society Symposium Proceedings. Vol. 679. p. 43-48 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Listeria
Diaphragms
Silicon wafers
Amino acids
Polystyrenes

Does suture technique influence repair strength of partially lacerated human flexor tendon in vitro?

Zobitz, M. E., Zhao, C. D., Amadio, P. C. & An, K. N., 2001, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Kamm, R. D., Schmid-Schoenbein, G. W., Atesian, G. A. & Hefzy, M. S. (eds.). Vol. 50. p. 99-100 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tendons
Repair
Tensile testing
Loads (forces)
Stiffness