Health Sciences Research

Research Output 1979 2020

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Conference contribution
2013
2 Citations (Scopus)

Automatic identification of comparative effectiveness research from medline citations to support clinicians' treatment information needs

Zhang, M., Del Fiol, G., Grout, R. W., Jonnalagadda, S., Medlin, R., Mishra, R., Weir, C., Liu, H. D., Mostafa, J. & Fiszman, M., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 846-850 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Comparative Effectiveness Research
Point-of-Care Systems
Natural Language Processing
Therapeutics
Metadata
9 Citations (Scopus)

Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic Web technologies

Jiang, G. D., Wang, L., Liu, H. D., Solbrig, H. R. & Chute, C. G., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 496-500 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge Bases
Terminology
Semantic Web
Drug-Related Side Effects and Adverse Reactions
Semantics
3 Citations (Scopus)

Capacity management and patient scheduling in an outpatient clinic using discrete event simulation

Akin, G., Ivy, J. S., Huschka, T. R., Rohleder, T. R. & Marmor, Y. N., 2013, Proceedings of the 2013 Winter Simulation Conference - Simulation: Making Decisions in a Complex World, WSC 2013. p. 2215-2226 12 p. 6721598

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discrete event simulation
Discrete Event Simulation
Scheduling
Date
Performance Indicators

Hand instrument performance in a single site surgery simulator with novices

Riggle, J. D., Miller, E. E., McCrory, B., Meitl, A., Lim, E., Hallbeck, S. & LaGrange, C. A., 2013, Proceedings of the Human Factors and Ergonomics Society. p. 1522-1526 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgery
surgery
Simulators
performance
time
1 Citation (Scopus)

Human factors in the wild: Insight from developing solutions in healthcare (discussion panel)

Xiao, Y., Abts, N., Wolf, L., Hallbeck, S., Taneva, S., Chagpar, A. & Probst, C. A., 2013, Proceedings of the Human Factors and Ergonomics Society. p. 1057-1060 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Human engineering
Defects
Glucose
Identification (control systems)
Systems analysis
1 Citation (Scopus)

Integrated cTAKES for concept mention detection and normalization

Liu, H. D., Wagholikar, K., Jonnalagadda, S. & Sohn, S., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1179.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Semantics
Labeling
Learning systems
1 Citation (Scopus)

Laparoscopic surgical team stress measures during randomized controlled trials of 4-port vs. Single incision cholecystecomies: A pilot study

Hallbeck, S., Lowndes, B. & Bingener, J., 2013, Proceedings of the Human Factors and Ergonomics Society. p. 654-657 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgery
surgery
workload
fatigue
Medicine
4 Citations (Scopus)

MayoClinicNLP–CORE: Semantic representations for textual similarity

Wu, S., Zhu, D., Carterette, B. & Liu, H. D., Jan 1 2013, *SEM 2013 - 2nd Joint Conference on Lexical and Computational Semantics. Association for Computational Linguistics (ACL), Vol. 1. p. 148-154 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Similarity
Semantics
Linear Regression Model
Feature Selection
Baseline
1 Citation (Scopus)

Mining anti-coagulant drug-drug interactions from electronic health records using linked data

Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 7970 LNBI. p. 128-140 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7970 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Linked Data
Mining
Drugs
Health
2 Citations (Scopus)

Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin

Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 23-30 8 p. 6732595

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Drug therapy
Health
Semantic Web
Genes

Multiresolution image analysis for automatic quantification of collagen gel contraction

Chen, H. C., Yang, T. H., Thoreson, A. R., Zhao, C. D., Amadio, P. C., Su, F. C., Jia, W., Sun, Y. N., An, K. N. & Sun, M., 2013, Proceedings of the IEEE Annual Northeast Bioengineering Conference, NEBEC. p. 64-65 2 p. 6574359

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Collagen
Image analysis
Gels
Biocompatible Materials
Tissue engineering

Ontology-based temporal analysis for medical device adverse event- A use case study on Late Stent Thrombosis

Clark, K., Sharma, D., Qin, R., Jiang, G. D., Chute, C. G. & Tao, C., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1114.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stents
Ontology
Computer systems
1 Citation (Scopus)

Phenotyping on EHR data using OWL and semantic web technologies

Tao, C., Li, D., Shen, F., Lian, Z., Pathak, J., Liu, H. D. & Chute, C. G., 2013, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 8040 LNCS. p. 31-32 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8040 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Health
Electronics
2 Citations (Scopus)

Prioritizing journals relevant to a topic for addressing clinicians' information needs

Jonnalagadda, S. R., Moosavinasab, S., Li, D., Abel, M. D., Chute, C. G. & Liu, H. D., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 5-6 2 p. 6732590

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Decision making
Linear regression
Medicine
1 Citation (Scopus)

Profiling adverse drug events of cancer drug ingredients using normalized AERS data

Wang, L. & Liu, H. D., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 46-52 7 p. 6732599

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data mining

Simulation-based analysis of scheduling decisions in an outpatient clinic

Akin, G., Ivy, J. S., Huschka, T. R. & Rohleder, T. R., 2013, IIE Annual Conference and Expo 2013. Institute of Industrial Engineers, p. 3550-3559 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scheduling
Planning

Standardized drug and pharmacological class network construction

Zhu, Q., Jiang, G. D., Wang, L. & Chute, C. G., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1061.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data integration
Terminology
Labels
3 Citations (Scopus)

Standardized drug and pharmacological class network construction

Zhu, Q., Jiang, G. D., Wang, L. & Chute, C. G., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 1125 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Pharmacology
Pharmaceutical Preparations
Data integration
Labels
5 Citations (Scopus)

Standardizing drug adverse event reporting data

Wang, L., Jiang, G. D., Li, D. & Liu, H. D., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 1101 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Signal detection
Terminology
Drug-Related Side Effects and Adverse Reactions
Data mining
Research Design
1 Citation (Scopus)

Towards assigning references using semantic, journal and citation relevance

Li, D. C., Liu, H. D., Chute, C. G. & Jonnalagadda, S. R., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 499-503 5 p. 6732545

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information retrieval systems
Refining
Learning systems
Semantics
Communication

Using discharge summaries to improve information retrieval in clinical domain

Zhu, D., Stephen, W., James, M., Carterette, B. & Liu, H. D., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1179.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic medical equipment
Information retrieval
Processing
Health
15 Citations (Scopus)

Using linked data for mining drug-drug interactions in electronic health records

Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 682-686 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug interactions
Drug therapy
Data Mining
Electronic Health Records
Drug Interactions

Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards

Jiang, G. D., Evans, J., Endle, C. M., Solbrig, H. R. & Chute, C. G., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1114.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Metadata
Visualization
Semantics
Web services
2012
16 Citations (Scopus)

Applying Linked Data principles to represent patient's electronic health records at Mayo Clinic: A case report

Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 455-464 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Technology
Translational Medical Research
Information Storage and Retrieval
Semantics

A semantic-web oriented representation of clinical element model for secondary use of electronic healthcare data

Tao, C., Jiang, G. D., Oniki, T. A., Freimuth, R., Pathak, J., Zhu, Q., Sharma, D., Huff, S. M. & Chute, C. G., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 133 1 p. 6366225

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Semantics
Delivery of Health Care
Terminology
Language
2 Citations (Scopus)

Automatically extracting sentences from medline citations to support clinicians' information needs

Jonnalagadda, S., Fiol, G. D., Medlin, R., Weir, C., Fiszman, M., Mostafa, J. & Liu, H. D., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 72 1 p. 6366197

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information Storage and Retrieval
Information retrieval
Decision making
Semantics
Point-of-Care Systems
1 Citation (Scopus)

Building standardized Semantic Web RESTful services to support ICD-11 revision

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2012, CEUR Workshop Proceedings. CEUR-WS, Vol. 952.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Web services
Semantics
Health
Terminology
1 Citation (Scopus)

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model

Xu, B., Lin, H., Yang, Z., Wagholikar, K. B. & Liu, H. D., 2012, Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012. p. 640-647 8 p. 6470213

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning systems
Proteins
Protein Interaction Maps
Genetic algorithms
Machine Learning
3 Citations (Scopus)

Clinical decision support for colonoscopy surveillance using natural language processing

Wagholikar, K., Sohn, S., Wu, S., Kaggal, V., Buehler, S., Greenes, R., Wu, T. T., Larson, D., Liu, H. D., Chaudhry, R. & Boardman, L. A., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 12-21 10 p. 6366186

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical Decision Support Systems
Natural Language Processing
Colonoscopy
Decision support systems
Processing
1 Citation (Scopus)

Harmonization of detailed clinical models with clinical study data standards

Jiang, G. D., Evans, J., Oniki, T., Coyle, J., Bain, L., Huff, S., Kush, R. & Chute, C. G., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 23-30 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Clinical research
Harmonization
Consortium
Semantic interoperability
3 Citations (Scopus)

Modeling UIMA type system using web ontology language - Towards interoperability among UIMA-based NLP tools

Liu, H. D., Wu, S., Tao, C. & Chute, C., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 31-36 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Language
Natural language processing
Information management
Ontology
1 Citation (Scopus)

Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data

Li, D., Tao, C., Liu, H. D. & Chute, C., 2012, Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012. p. 708-715 8 p. 6382894

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Health
Hidden Markov models
Parameter estimation
Big data
11 Citations (Scopus)

Optimizing semantic MEDLINE for translational science studies using semantic web technologies

Tao, C., Zhang, Y., Jiang, G. D., Bouamrane, M. M. & Chute, C. G., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 53-57 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Science studies
Web technology
Semantic web
Resources
Data base

Prioritization of hospital laboratory orders considering cancellation probabilities

Ghavrish, A., Sir, M. & Pasupathy, K. S., 2012, 62nd IIE Annual Conference and Expo 2012. Institute of Industrial Engineers, p. 1717-1723 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Personnel
Processing
Costs
1 Citation (Scopus)

Requirements and strategy for the development of a pediatric drug ontology

Richesson, R., Pathak, J., McLeod, W., Blackmon, G. & Vehik, K., 2012, CEUR Workshop Proceedings. Vol. 897.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pediatrics
Terminology
Ontology
Knowledge representation
Antibiotics

Systematic analysis of cross-institutional medication description patterns in clinical notes

Sohn, S., Murphy, S. P., Jonnalagadda, S. R., Wagholikar, K., Wu, S. T., Chute, C. G., Liu, H. D. & Halgrim, S., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 118 1 p. 6366211

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Natural Language Processing
Processing
2 Citations (Scopus)

The Linked Clinical Data project: Applying Semantic Web technologies for clinical and translational research using electronic medical records

Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, ACM International Conference Proceeding Series. p. 94-95 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic medical equipment
Semantic Web
Genes
Semantics
Throughput
2 Citations (Scopus)

Using semantic web technology to support ICD-11 textual definitions authoring

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2012, ACM International Conference Proceeding Series. p. 38-44 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
1 Citation (Scopus)

Validation and discovery of genotype-phenotype associations in chronic diseases using linked data

Pathak, J., Kiefer, R., Freimuth, R. & Chute, C., 2012, Studies in Health Technology and Informatics. Vol. 180. p. 549-553 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genetic Association Studies
Semantic Web
Semantics
Single Nucleotide Polymorphism
Chronic Disease
2011
3 Citations (Scopus)

A case study of ICD-11 anatomy value set extraction from SNOMED CT

Jiang, G. D., Solbrig, H. R., Chalmers, R. J. G., Spackman, K., Rector, A. L. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 133-138 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Oncology
4 Citations (Scopus)

An exact algorithm for providing multi-perspective event coverage in Wireless Multimedia Sensor Networks

Yildiz, E., Akkaya, K., Sisikoglu, E. & Sir, M., Sep 12 2011, IWCMC 2011 - 7th International Wireless Communications and Mobile Computing Conference. p. 382-387 6 p. 5982564

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor networks
multimedia
coverage
Cameras
event

An ontological representation of adverse drug events

Jiang, G. D., Duke, J. D., Pathak, J. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 329-331 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thesauri
Decision support systems
41 Citations (Scopus)

An optimization-based approach for connecting partitioned mobile sensor/Actuator Networks

Sir, M., Senturk, I. F., Sisikoglu, E. & Akkaya, K., Jul 26 2011, 2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011. p. 525-530 6 p. 5928869

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Actuators
Sensors
Wireless networks
travel
Computational efficiency
16 Citations (Scopus)

A simple statistical model and association rule filtering for classification

Simon, G. J., Kumar, V. & Li, P. W., 2011, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 823-831 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Classifiers
Statistical Models
Logistics
Labels
5 Citations (Scopus)

A simulation tool to support recovery bed planning for surgical patients

Marmor, Y. N., Rohleder, T. R., Huschka, T., Cook, D. & Thompson, J., 2011, Proceedings - Winter Simulation Conference. p. 1333-1339 7 p. 6147854

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Service Levels
Simulation Tool
Cardiovascular Surgery
Surgery
1 Citation (Scopus)

Automatic verification and validation of a CAS simulation of an intensive care unit

Eichelberger, C. N., Hadzikadic, M., Gajic, O. & Li, G., 2011, AAAI Fall Symposium - Technical Report. Vol. FS-11-03. p. 44-48 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Adaptive systems
9 Citations (Scopus)

Camera deployment for video panorama generation in wireless visual sensor networks

Yildiz, E., Akkaya, K., Sisikoglu, E., Sir, M. & Guneydas, I., Dec 1 2011, Proceedings - 2011 IEEE InternationalSymposium on Multimedia, ISM 2011. p. 595-600 6 p. 6123413

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor networks
Cameras
Costs
Sensors

Empirical ontologies for cohort identification

Wu, S., Wagholikar, K., Sohn, S., Kaggal, V. & Liu, H. D., 2011, NIST Special Publication.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
2 Citations (Scopus)

Gene expression analysis with integrated fuzzy C-means and pathway analysis

Zhang, M., Adamu, B., Lin, C. C. & Yang, P., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 936-939 4 p. 6090211

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Software
Workflow
Genes
Gene Expression
2 Citations (Scopus)

Generality and reuse in a common type system for clinical natural language processing

Wu, S. T., Kaggal, V. C., Savova, G. K., Liu, H. D., Dligach, D., Zheng, J., Chapman, W. W. & Chute, C. G., 2011, International Conference on Information and Knowledge Management, Proceedings. p. 27-34 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural language processing
Reuse
Electronic medical record
Web sites
Throughput