Health Sciences Research

Research Output 1979 2020

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Conference contribution
2001

A microfabricated device for the characterization of biological entities

Chang, H., Ikram, A., Young, M., Kosari, F., Vasmatzis, G., Bhunia, A. & Bashir, R., 2001, Materials Research Society Symposium Proceedings. Vol. 679. p. 43-48 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Listeria
Diaphragms
Silicon wafers
Amino acids
Polystyrenes

Does suture technique influence repair strength of partially lacerated human flexor tendon in vitro?

Zobitz, M. E., Zhao, C. D., Amadio, P. C. & An, K. N., 2001, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. Kamm, R. D., Schmid-Schoenbein, G. W., Atesian, G. A. & Hefzy, M. S. (eds.). Vol. 50. p. 99-100 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tendons
Repair
Tensile testing
Loads (forces)
Stiffness
2004
27 Citations (Scopus)

A system for the analysis of whole-bone strength from helical CT images

Camp, J. J., Karwoski, R. A., Stacy, M. C., Atkinson, E. J., Khosla, S., Melton, L. J., Riggs, B. L. & Robb, R. A., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Amini, A. A. & Mandura, A. (eds.). Vol. 5369. p. 74-88 15 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

bones
Bone
osteoporosis
Minerals
minerals
2005

Strength of suture-tendon interface increased by eyelet modification

Zhao, C. D., Sun, Y. L., Yang, C., Zobitz, M. E., Amadio, P. C. & An, K. N., 2005, Proceedings of the 2005 Summer Bioengineering Conference. Vol. 2005. p. 195-196 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tendons
2006

Primary Care Practice Portal: A web based management reporting system for administrators, physicians and care teams

Rahman, A. S., Naessens, J. M., Cabanela, R. L. & Anderson, S. S., 2006, CITSA 2006 - 3rd Int. Conf. on Cybernetics and Information Technol., Systems and Applications, Jointly with the 4th Int. Conf. on Computing, Communications and Control Technologies, CCCT 2006 - Proc.. International Institute of Informatics and Systemics, IIIS, Vol. 1. p. 242-245 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

World Wide Web
Decision making
Industry
2007

Aequus communis sententia: Defining levels of interoperability

Elkin, P. L., Froehling, D., Bauer, B. A., Wahner-Roedler, D., Rosenbloom, S. T., Bailey, K. R. & Brown, S. H., 2007, Studies in Health Technology and Informatics. Vol. 129. p. 725-729 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer Systems
Semantics
Interoperability
Specifications
Ontology
2008
2 Citations (Scopus)

Adopting graph traversal techniques for context-driven value sets extraction from biomedical knowledge sources

Pathak, J., Jiang, G. D., Dwarkanath, S. O., Buntrock, J. D. & Chute, C. G., 2008, Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008. p. 460-467 8 p. 4597226

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Medical information systems
Ontology
Semantics
5 Citations (Scopus)

A fuzzy c-means algorithm using a correlation metrics and gene ontology

Zhang, M., Therneau, T. M., McKenzie, M. A., Li, P. & Yang, P., 2008, Proceedings - International Conference on Pattern Recognition. 4761672

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Genes
Microarrays
Yeast
Functional groups

Comparing the effects of two semantic terminology models on classification of clinical notes: A study of heart murmur findings

Jiang, G. D. & Chute, C. G., 2008, CEUR Workshop Proceedings. Vol. 410. p. 59-65 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Semantics
Decision trees
Information retrieval
Classifiers
6 Citations (Scopus)

Composing web services through automatic reformulation of service specifications

Pathak, J., Basu, S. & Honavar, V., 2008, Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008. Vol. 1. p. 361-369 9 p. 4578483

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Web services
Specifications
Chemical analysis
Flow control
Data structures
23 Citations (Scopus)

Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction

Hwang, T., Tian, Z., Kuang, R. & Kocher, J-P., 2008, Proceedings - IEEE International Conference on Data Mining, ICDM. p. 293-302 10 p. 4781124

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Proteins
Genes
Oncology
Data integration

LexSearch: An approach for leveraging semantic annotations to searching ontologies

Pathak, J., Buntrock, J. D. & Chute, C. G., 2008, AAAI Spring Symposium - Technical Report. Vol. SS-08-05. p. 68-73 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Semantics
Search engines
Semantic Web
Data structures
4 Citations (Scopus)

Modular ontology techniques and their applications in the biomedical domain

Pathak, J., Johnson, T. M. & Chute, C. G., 2008, 2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008. p. 351-356 6 p. 4583056

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Medical information systems
Graph theory
Terminology
Interoperability
2009
12 Citations (Scopus)

A new validity measure for a correlation-based fuzzy C-means clustering algorithm

Zhang, M., Zhang, W., Sicotte, H. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. p. 3865-3868 4 p. 5332582

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fuzzy clustering
Microarrays
Clustering algorithms
Cluster Analysis

Gender and arthroplasty type affect prevalence of moderate-severe pain post total hip arthroplasty

Singh, J. A., Gabriel, S. E. & Lewallen, D., 2009, IFMBE Proceedings. Vol. 23. p. 1640-1643 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tacrine
Arthroplasty
Surgery
Bone
Durability
2 Citations (Scopus)

Integrating r models with web technologies

Zhang, M., Olson, S., Francioni, J., Gegg-Harrison, T., Meng, N., Sun, Z. D. & Yang, P., 2009, HEALTHINF 2009 - Proceedings of the 2nd International Conference on Health Informatics. p. 411-415 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Software
Technology
Software architecture
Software engineering
Statistical Models

LexRDF model: An RDF-based unified model for heterogeneous biomedical ontologies

Tao, C., Pathak, J., Solbrig, H. R., Wei, W. Q. & Chute, C. G., 2009, CEUR Workshop Proceedings. Vol. 521.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Specifications
Terminology
Semantic Web
Application programming interfaces (API)
6 Citations (Scopus)

Porting a cancer treatment prediction to a mobile device

Gegg-Harrison, T., Zhang, M., Meng, N., Sun, Z. D. & Yang, P., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. p. 6218-6221 4 p. 5334551

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oncology
Mobile devices
Lung Neoplasms
Equipment and Supplies
Neoplasms
2010

Mash-up of lexwiki and web-protégé for distributed authoring of large-scale biomedical terminologies

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2010, CEUR Workshop Proceedings. Vol. 754.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Terminology
Machinery
Ontology
Semantics
1 Citation (Scopus)

Modeling care teams at Mayo Clinic

Rohleder, T., Huschka, T., Egginton, J., O'Neil, D. & Woychick, N., 2010, Proceedings - Winter Simulation Conference. p. 2304-2314 11 p. 5678928

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health care
Discrete event simulation
Modeling
Healthcare
Productivity

Pilot study: Agent-based exploration of complex data in a hospital environment

Carmichael, T., Hadzikadic, M. & Gajic, O., 2010, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5980 LNAI. p. 16-26 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5980 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric grounding
Data mining
Agent-based Model
Iterative Process
Bottom-up
2011
3 Citations (Scopus)

A case study of ICD-11 anatomy value set extraction from SNOMED CT

Jiang, G. D., Solbrig, H. R., Chalmers, R. J. G., Spackman, K., Rector, A. L. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 133-138 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Oncology
4 Citations (Scopus)

An exact algorithm for providing multi-perspective event coverage in Wireless Multimedia Sensor Networks

Yildiz, E., Akkaya, K., Sisikoglu, E. & Sir, M., Sep 12 2011, IWCMC 2011 - 7th International Wireless Communications and Mobile Computing Conference. p. 382-387 6 p. 5982564

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor networks
multimedia
coverage
Cameras
event

An ontological representation of adverse drug events

Jiang, G. D., Duke, J. D., Pathak, J. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 329-331 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thesauri
Decision support systems
41 Citations (Scopus)

An optimization-based approach for connecting partitioned mobile sensor/Actuator Networks

Sir, M., Senturk, I. F., Sisikoglu, E. & Akkaya, K., Jul 26 2011, 2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011. p. 525-530 6 p. 5928869

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Actuators
Sensors
Wireless networks
travel
Computational efficiency
16 Citations (Scopus)

A simple statistical model and association rule filtering for classification

Simon, G. J., Kumar, V. & Li, P. W., 2011, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 823-831 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Classifiers
Statistical Models
Logistics
Labels
5 Citations (Scopus)

A simulation tool to support recovery bed planning for surgical patients

Marmor, Y. N., Rohleder, T. R., Huschka, T., Cook, D. & Thompson, J., 2011, Proceedings - Winter Simulation Conference. p. 1333-1339 7 p. 6147854

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Service Levels
Simulation Tool
Cardiovascular Surgery
Surgery
1 Citation (Scopus)

Automatic verification and validation of a CAS simulation of an intensive care unit

Eichelberger, C. N., Hadzikadic, M., Gajic, O. & Li, G., 2011, AAAI Fall Symposium - Technical Report. Vol. FS-11-03. p. 44-48 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Adaptive systems
9 Citations (Scopus)

Camera deployment for video panorama generation in wireless visual sensor networks

Yildiz, E., Akkaya, K., Sisikoglu, E., Sir, M. & Guneydas, I., Dec 1 2011, Proceedings - 2011 IEEE InternationalSymposium on Multimedia, ISM 2011. p. 595-600 6 p. 6123413

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor networks
Cameras
Costs
Sensors

Empirical ontologies for cohort identification

Wu, S., Wagholikar, K., Sohn, S., Kaggal, V. & Liu, H. D., 2011, NIST Special Publication.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
2 Citations (Scopus)

Gene expression analysis with integrated fuzzy C-means and pathway analysis

Zhang, M., Adamu, B., Lin, C. C. & Yang, P., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 936-939 4 p. 6090211

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Software
Workflow
Genes
Gene Expression
2 Citations (Scopus)

Generality and reuse in a common type system for clinical natural language processing

Wu, S. T., Kaggal, V. C., Savova, G. K., Liu, H. D., Dligach, D., Zheng, J., Chapman, W. W. & Chute, C. G., 2011, International Conference on Information and Knowledge Management, Proceedings. p. 27-34 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural language processing
Reuse
Electronic medical record
Web sites
Throughput

Human gene/protein synonym dictionary from WikiLinks

Wagholikar, K., Torii, M. & Liu, H. D., 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 462-464 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Genes
Proteins
Literature
Feasibility Studies
3 Citations (Scopus)

Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in MEDLINE abstracts

Chen, Y., Torii, M., Lu, C. T. & Liu, H. D., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 530-537 8 p. 6112425

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alternative Splicing
MEDLINE
Learning algorithms
Learning systems
Classifiers

Model based user interface design for predicting lung cancer treatment outcomes

Zhang, M., Liu, Y., Jiang, Y., Sun, Z. D. & Yang, P., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 75-78 4 p. 6089900

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oncology
User interfaces
Lung Neoplasms
Software
Small Cell Lung Carcinoma

Toward answering time-related questions from adverse event reports using ontology-based approaches

Tao, C., Jiang, G. D., Clark, K., Sharma, D. & Chute, C. G., 2011, CEUR Workshop Proceedings. Vol. 833. p. 332-334 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
7 Citations (Scopus)

Toward semantic web based knowledge representation and extraction from electronic health records

Tao, C., Pathak, J., Welch, S. R., Bouamrane, M. M., Huff, S. M. & Chute, C. G., 2011, International Conference on Information and Knowledge Management, Proceedings. p. 75-78 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge representation
Knowledge extraction
Electronic health record
Semantic web
Web-based
3 Citations (Scopus)

Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images

Simon, G. J., Li, P. W., Jack, C. R. J. & Vemuri, P. D., 2011, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 369-376 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association rules
Trajectories
Magnetic Resonance Imaging
Brain
Neurodegenerative diseases

Using RxNorm to extract medication data from electronic health records in the rochester epidemiology project

Pathak, J., Murphy, S. P., Willaert, B. N., Maradit Kremers, H. D., Chute, C. G., Yawn, B. P. & Rocca, W. A., 2011, CEUR Workshop Proceedings. Vol. 833. p. 266-268 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Epidemiology
Terminology
Health
Medicine
Availability
2012
16 Citations (Scopus)

Applying Linked Data principles to represent patient's electronic health records at Mayo Clinic: A case report

Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 455-464 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Technology
Translational Medical Research
Information Storage and Retrieval
Semantics

A semantic-web oriented representation of clinical element model for secondary use of electronic healthcare data

Tao, C., Jiang, G. D., Oniki, T. A., Freimuth, R., Pathak, J., Zhu, Q., Sharma, D., Huff, S. M. & Chute, C. G., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 133 1 p. 6366225

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Semantics
Delivery of Health Care
Terminology
Language
2 Citations (Scopus)

Automatically extracting sentences from medline citations to support clinicians' information needs

Jonnalagadda, S., Fiol, G. D., Medlin, R., Weir, C., Fiszman, M., Mostafa, J. & Liu, H. D., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 72 1 p. 6366197

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information Storage and Retrieval
Information retrieval
Decision making
Semantics
Point-of-Care Systems
1 Citation (Scopus)

Building standardized Semantic Web RESTful services to support ICD-11 revision

Jiang, G. D., Solbrig, H. R. & Chute, C. G., 2012, CEUR Workshop Proceedings. CEUR-WS, Vol. 952.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Web services
Semantics
Health
Terminology
1 Citation (Scopus)

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model

Xu, B., Lin, H., Yang, Z., Wagholikar, K. B. & Liu, H. D., 2012, Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012. p. 640-647 8 p. 6470213

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning systems
Proteins
Protein Interaction Maps
Genetic algorithms
Machine Learning
3 Citations (Scopus)

Clinical decision support for colonoscopy surveillance using natural language processing

Wagholikar, K., Sohn, S., Wu, S., Kaggal, V., Buehler, S., Greenes, R., Wu, T. T., Larson, D., Liu, H. D., Chaudhry, R. & Boardman, L. A., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 12-21 10 p. 6366186

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical Decision Support Systems
Natural Language Processing
Colonoscopy
Decision support systems
Processing
1 Citation (Scopus)

Harmonization of detailed clinical models with clinical study data standards

Jiang, G. D., Evans, J., Oniki, T., Coyle, J., Bain, L., Huff, S., Kush, R. & Chute, C. G., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 23-30 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Clinical research
Harmonization
Consortium
Semantic interoperability
3 Citations (Scopus)

Modeling UIMA type system using web ontology language - Towards interoperability among UIMA-based NLP tools

Liu, H. D., Wu, S., Tao, C. & Chute, C., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 31-36 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Language
Natural language processing
Information management
Ontology
1 Citation (Scopus)

Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data

Li, D., Tao, C., Liu, H. D. & Chute, C., 2012, Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012. p. 708-715 8 p. 6382894

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Health
Hidden Markov models
Parameter estimation
Big data
11 Citations (Scopus)

Optimizing semantic MEDLINE for translational science studies using semantic web technologies

Tao, C., Zhang, Y., Jiang, G. D., Bouamrane, M. M. & Chute, C. G., 2012, International Conference on Information and Knowledge Management, Proceedings. p. 53-57 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Science studies
Web technology
Semantic web
Resources
Data base

Prioritization of hospital laboratory orders considering cancellation probabilities

Ghavrish, A., Sir, M. & Pasupathy, K. S., 2012, 62nd IIE Annual Conference and Expo 2012. Institute of Industrial Engineers, p. 1717-1723 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Personnel
Processing
Costs