Biochemistry and Molecular Biology

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2019

Assays for light chain amyloidosis formation and cytotoxicity

Blancas-Mejia, L. M., Misra, P., Dick, C. J., Marin-Argany, M., Redhage, K. R., Cooper, S. A. & Ramirez-Alvarado, M., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-153 31 p. (Methods in Molecular Biology; vol. 1873).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Interplay Among PI3K/AKT, PTEN/FOXO and AR Signaling in Prostate Cancer

Yan, Y. & Huang, H., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 319-331 13 p. (Advances in Experimental Medicine and Biology; vol. 1210).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2018

A Novel Zebrafish Model for Assessing In Vivo Delivery of Morpholino Oligomers

Kim, J., Clark, K. J., Barton, C., Tanguay, R. & Moulton, H., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 293-306 14 p. (Methods in Molecular Biology; vol. 1828).

Research output: Chapter in Book/Report/Conference proceedingChapter

Approaches for determining DNA persistence length using atomic force microscopy

Peters, J. P. & Maher III, L. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 211-256 46 p. (Methods in Molecular Biology; vol. 1837).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-resolution characterization of DNA/protein complexes in living bacteria

Becker, N. A., Peters, J. P. & Maher III, L. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-115 21 p. (Methods in Molecular Biology; vol. 1837).

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Androgen receptor signaling in castration resistant prostate cancer

Zhao, Y., Tindall, D. J. & Huang, H., Jan 1 2016, Managing Metastatic Prostate Cancer In Your Urological Oncology Practice. Springer International Publishing, p. 23-34 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuroblastoma and its zebrafish model

Zhu, S. & Thomas Look, A., Jan 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 451-478 28 p. (Advances in Experimental Medicine and Biology; vol. 916).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

TALEN-Mediated mutagenesis and genome editing

Ma, A. C. H., Chen, Y., Blackburn, P. R. & Ekker, S. C., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1451. p. 17-30 14 p. (Methods in Molecular Biology; vol. 1451).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations

The zebrafish genome editing toolkit

Ata, H., Clark, K. J. & Ekker, S. C., 2016, The Zebrafish Genetics, Genomics, and Transcriptomics, 2016. Academic Press Inc., Vol. 135. p. 149-170 22 p. (Methods in Cell Biology; vol. 135).

Research output: Chapter in Book/Report/Conference proceedingChapter

13 Scopus citations

Tudor Domains as Methyl-Lysine and Methyl-Arginine Readers

Botuyan, M. V. & Mer, G., Aug 24 2016, Chromatin Signaling and Diseases. Elsevier Inc., p. 149-165 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2015

Methyllysine recognition by the royal family modules: Chromo, tudor, MBT, chromo barrel, and PWWP domains

Xu, C., Cui, G., Botuyan, M. V. & Mer, G., Jan 1 2015, Histone Recognition. Springer International Publishing, p. 49-82 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Small gtpases act as cellular switches in the context of cilia

Li, Y. & Hu, J., Aug 21 2015, The Cytoskeleton in Health and Disease. Springer New York, p. 217-237 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations
2014

Experimental model of aortic valve calcification to induce osteoblast differentiation

Rajamannan, N. M., Cicek, M., Hawse, J. R., Spelsberg, T. C. & Subramaniam, M., Jan 1 2014, Molecular Biology of Valvular Heart Disease. Springer-Verlag London Ltd, p. 27-33 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In vitro cell culture model of calcification: Molecular regulation of myofibroblast differentiation to an osteoblast phenotype

Rajamannan, N. M., Cicek, M., Hawse, J. R., Spelsberg, T. C. & Subramaniam, M., Jan 1 2014, Molecular Biology of Valvular Heart Disease. Springer-Verlag London Ltd, p. 13-20 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Using engineered endonucleases to create knockout and knockin zebrafish models

Bedell, V. M. & Ekker, S. C., Nov 19 2014, Chromosomal Mutagenesis: Second Edition. Springer Fachmedien, p. 291-305 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Analysis of lipid droplet dynamics and functions in drosophila melanogaster

Lee, H., Peng, Y. & Guo, Y., 2013, Methods in Cell Biology. Academic Press Inc, p. 53-69 17 p. (Methods in Cell Biology; vol. 116).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Androgen regulation of the cell cycle in prostate cancer

Huang, H., Oct 1 2013, Androgen-Responsive Genes in Prostate Cancer: Regulation, Function and Clinical Applications. Springer New York, Vol. 9781461461821. p. 215-225 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Experimental evidence for the role of atherosclerosis in calcific aortic valve disease

Subramaniam, M., Spelsberg, T. C. & Rajamannan, N. M., Jan 1 2013, Cardiac Valvular Medicine. Springer-Verlag London Ltd, p. 23-33 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Method for measuring mRNA decay rate in saccharomyces cerevisiae

Hu, W. & Coller, J., 2013, Laboratory Methods in Enzymology: RNA. Academic Press Inc, p. 137-155 19 p. (Methods in Enzymology; vol. 530).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Polysome analysis for determining mRNA and ribosome association in saccharomyces cerevisiae

Hu, W. & Coller, J., 2013, Laboratory Methods in Enzymology: RNA. Academic Press Inc, p. 193-206 14 p. (Methods in Enzymology; vol. 530).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Zebrafish

Clark, K. J. & Ekker, S. C., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 396-398 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Anemic zebrafish models of cardiomyopathy

Sun, X. & Xu, X., Nov 19 2012, TRP Channels in Drug Discovery: Volume II. Szallasi, A. & Biro, T. (eds.). p. 41-54 14 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantifying cardiac functions in embryonic and adult zebrafish

Hoage, T., Ding, Y. & Xu, X., Feb 1 2012, Cardiovascular Development: Methods and Protocols. Peng, X. & Antonyak, M. (eds.). p. 11-20 10 p. (Methods in Molecular Biology; vol. 843).

Research output: Chapter in Book/Report/Conference proceedingChapter

49 Scopus citations

Thoughts on progress in the centrosome field

Salisbury, J. L., Jan 1 2012, The Centrosome: Cell and Molecular Mechanisms of Functions and Dysfunctions in Disease. Humana Press Inc., p. 385-391 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Using zebrafish for studying Rho GTPases signaling in vivo

Zhu, S. & Low, B. C., Jan 20 2012, Rho GTPases: Methods and Protocols. Rivero, F. (ed.). p. 321-337 17 p. (Methods in Molecular Biology; vol. 827).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2011

Quantitative methods for measuring DNA flexibility in vitro and in vivo

Peters, J. P., Becker, N. A., Rueter, E. M., Bajzer, Z., Kahn, J. D. & Maher, L. J., 2011, Methods in Enzymology. C ed. Academic Press Inc, p. 287-335 49 p. (Methods in Enzymology; vol. 488, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

21 Scopus citations

Transgenic zebrafish using transposable elements

Clark, K. J., Urban, M. D., Skuster, K. J. & Ekker, S. C., 2011, Methods in Cell Biology. Academic Press Inc, p. 137-149 13 p. (Methods in Cell Biology; vol. 104).

Research output: Chapter in Book/Report/Conference proceedingChapter

41 Scopus citations
2010

Systemic Amyloidoses

Ramirez-Alvarado, M. & Buxbaum, J. N., Jul 2 2010, Protein Misfolding Diseases: Current and Emerging Principles and Therapies. John Wiley and Sons, p. 325-345 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Chapter 4 Principles of Protein Misfolding

Ramirez-Alvarado, M., Dec 1 2008, Molecular Biology of Protein Folding, Part B. Conn, M. (ed.). p. 115-160 46 p. (Progress in Nucleic Acid Research and Molecular Biology; vol. 84).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Estrogens and Progestins

Turner, R. T., Rickard, D. J., Iwaniec, U. T. & Spelsberg, T. C., Dec 1 2008, Principles of Bone Biology, Two-Volume Set. Elsevier Inc., Vol. 1. p. 855-885 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations
2007

Evaluating yeast biosynthetic vacuolar transport

Davies, B. A., Carney, D. S. & Horazdovsky, B. F., May 21 2007, Protein Targeting Protocols, Second Edition. p. 329-337 9 p. (Methods in Molecular Biology; vol. 390).

Research output: Chapter in Book/Report/Conference proceedingChapter

Vascular permeability factor/vascular endothelial growth factor and its receptors: Evolving paradigms in vascular biology and cell signaling

Mukhopadhyay, D., Bhattacharya, R. & Hughes, D. A., Jan 1 2007, Endothelial Biomedicine. Cambridge University Press, Vol. 9780521853767. p. 266-284 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2006

Sex Steroid Effects on Bone Metabolism

Monroe, D. G., Spelsberg, T. C. & Khosla, S., Dec 1 2006, Dynamics of Bone and Cartilage Metabolism. Elsevier Inc., p. 327-343 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2005

11 Analysis of centrosome amplification in cancer

Lingle, W. L. & Salisbury, J. L., Jan 1 2005, Molecular Genetics, Liver Carcinoma, and Pancreatic Carcinoma. Elsevier Inc., p. 119-128 10 p. (Handbook of Immunohistochemistry and in Situ Hybridization of Human Carcinomas; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingChapter

Deregulation of the centrosome cycle and the origin of chromosomal instability in cancer

Lingle, W. L., Lukasiewicz, K. & Salisbury, J. L., Dec 1 2005, Genome Instability in Cancer Development. p. 393-421 29 p. (Advances in Experimental Medicine and Biology; vol. 570).

Research output: Chapter in Book/Report/Conference proceedingChapter

60 Scopus citations
2004

An interactive strategy for the accurate characterization of transthyretin variants using combined proteomic and genomic technologies

Zeldenrust, S. R., Bergen, H. R., Nepomuceno, A. I., Butz, M. L., Snow, D. S., Dyck, P. J., Dyck, P. J. B., Klein, C. J., O’brien, J. F., Thibodeau, S. N. & Muddiman, D. C., Jan 1 2004, Amyloid and Amyloidosis. CRC Press, p. 329-331 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

General mechanisms of steroid receptors and receptor coregulator action

Monroe, D. G. & Spelsberg, T. C., Dec 1 2004, Principles of Sex-based Differences in Physiology. p. 39-48 10 p. (Advances in Molecular and Cell Biology; vol. 34).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations
1999

The role of the centrosome in the development of malignant tumors

Lingle, W. L. & Salisbury, J. L., Dec 1 1999, The centrosome in Cell Development and Early Development. p. 313-329 17 p. (Current Topics in Developmental Biology; vol. 49).

Research output: Chapter in Book/Report/Conference proceedingChapter

71 Scopus citations